Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

3076642 .. 3081039

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGATAATGGTGGCCATAAAGCGCGTGGTCGACTACGCCGTCAAAATCCGAGTCAAGTCCGACAAGAGCGGCGTGGAGACCCAGAACGTGAAGATGTCGATGAACCCATTTTGCGAGATCGCTTTGGAAGAGGCTCTTAGGATCAAAGAGTCGGGCTTGGCCTCGGAGGTCGTGGCGGTCACTATGGGAATGAAACAGAGCGTCGATACGTTAAGGACGGGTCTGGCTATGGGCGCTGATAGGGCTATACACGTGGAGACTGGTGGGCCCTTGTACCCTTTGTCAGTTGCTAAGCTGCTGAGGGCTTTGGTGGAGATTGAGAAGCCTGGTCTTCTCATTCTCGGGAAACAGGCTATTGATGATGATTGCAATCAAACTGGGCAAATGGTGGCGGGTCTGCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTTCTGGACAAGGAGAAGCAGATAGTGACAGTGGACAGAGAGGTAGATGGTGGTCTTGAAACTCTGTGTCTAGATTTACCAGCAGTGATTACCACTGATTTGAGGTTAAATCAACCAAGGTATGCGACACTCCCCAACATAATGAAAGCAAAATCAAAGCCCATAAAGAAGTTCACTCCACAGGATCTGAATGTGGAAATCAAATCCGACATAGAAGAGATTCAAGTCACAGAACCTCCAAAGAGAAAAGCAGGGGTTATCGTTTCTTCTGTGGATGAGCTGATTGACAAGCTGCAAAATGAAGCGCATGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

252

Amino Acids

27.5

Weight (kDa)

6.22

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	26 - 208	7.7e-40	Electron transfer flavoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	72, 179, 395
AclWI	GGATC	2 cut(s)	152, 630
AcoI	YGGCCR	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	432, 497, 662
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	298, 718, 730
AluI	AGCT	3 cut(s)	298, 718, 730
Alw26I	GTCTC	2 cut(s)	74, 254
AlwI	GGATC	2 cut(s)	152, 630
AlwNI	CAGNNNCTG	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	15, 162, 269, 410
ApaI	GGGCCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	298, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	3 cut(s)	27, 239, 745
AspS9I	GGNCC	2 cut(s)	269, 270
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	285, 717
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	74, 254
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	3 cut(s)	73, 299, 731
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	3 cut(s)	74, 300, 732
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	269, 270
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	165, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bse1I	ACTGG	3 cut(s)	268, 385, 413
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	165, 554
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	268, 385, 413
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	285, 717
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	4 cut(s)	17, 164, 271, 412
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	74, 254
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	17, 164, 271, 412
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	344
Bsp120I	GGGCCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	120, 144, 622
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	3 cut(s)	72, 179, 395
BspANI	GGCC	4 cut(s)	17, 164, 271, 412
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	152, 630
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	268, 385, 413
BssECI	CCNNGG	2 cut(s)	165, 554
BssMI	GATC	3 cut(s)	120, 144, 622
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	2 cut(s)	126, 648
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	3 cut(s)	140, 294, 302
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	3 cut(s)	27, 239, 745
BstKTI	GATC	3 cut(s)	123, 147, 625
BstMAI	GTCTC	2 cut(s)	74, 254
BstMBI	GATC	3 cut(s)	120, 144, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 409
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	285, 717
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	4 cut(s)	17, 164, 271, 412
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	474, 528, 531
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	3 cut(s)	27, 239, 745
Cfr13I	GGNCC	2 cut(s)	269, 270
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	140, 294, 302
DpnI	GATC	3 cut(s)	122, 146, 624
DpnII	GATC	3 cut(s)	120, 144, 622
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	126, 648
EarI	CTCTTC	2 cut(s)	126, 648
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	74
Eco72I	CACGTG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	1 cut(s)	749
FaiI	YATR	9 cut(s)	20, 188, 233, 251, 561, 578, 602, 650, 747
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	1 cut(s)	745
FauI	CCCGC	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	73, 299, 731
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	73, 299, 731
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	3 cut(s)	26, 238, 744
GluI	GCNGC	3 cut(s)	73, 299, 731
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	17, 164, 271, 412
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	3 cut(s)	27, 239, 745
Hin1II	CATG	1 cut(s)	749
Hin6I	GCGC	3 cut(s)	25, 237, 743
HinP1I	GCGC	3 cut(s)	25, 237, 743
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	54, 152, 658
Hpy166II	GTNNAC	3 cut(s)	34, 472, 612
Hpy188I	TCNGA	5 cut(s)	53, 64, 169, 627, 646
Hpy188III	TCNNGA	4 cut(s)	346, 443, 494, 509
Hpy8I	GTNNAC	3 cut(s)	34, 472, 612
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	90, 212, 255
HpyCH4V	TGCA	2 cut(s)	372, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 409
HpyF3I	CTNAG	3 cut(s)	140, 294, 302
HpySE526I	ACGT	3 cut(s)	90, 212, 255
Hsp92II	CATG	1 cut(s)	749
HspAI	GCGC	3 cut(s)	25, 237, 743
Kzo9I	GATC	3 cut(s)	120, 144, 622
Lsp1109I	GCAGC	2 cut(s)	285, 717
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	3 cut(s)	90, 212, 255
MaeIII	GTNAC	3 cut(s)	181, 463, 664
MalI	GATC	3 cut(s)	122, 146, 624
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	120, 144, 622
MboII	GAAGA	6 cut(s)	16, 106, 143, 326, 665, 696
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	63, 161
MmeI	TCCRAC	2 cut(s)	87, 669
MnlI	CCTC	8 cut(s)	127, 163, 175, 297, 423, 472, 534, 684
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	2 cut(s)	215, 545
Msp20I	TGGCCA	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 409
NdeII	GATC	3 cut(s)	120, 144, 622
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	181, 463, 664
NspI	RCATGY	1 cut(s)	749
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	74, 300, 732
PleI	GAGTC	2 cut(s)	62, 160
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	2 cut(s)	62, 160
Ppu21I	YACGTR	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	271
PspOMI	GGGCCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	269, 270
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	215, 545
SatI	GCNGC	3 cut(s)	73, 299, 731
Sau3AI	GATC	3 cut(s)	120, 144, 622
Sau96I	GGNCC	2 cut(s)	269, 270
SchI	GAGTC	2 cut(s)	63, 161
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
SsiI	CCGC	3 cut(s)	72, 179, 395
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	93, 215, 258
TaqI	TCGA	3 cut(s)	33, 101, 207
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	2 cut(s)	215, 545
Tru9I	TTAA	2 cut(s)	215, 545
TscAI	CASTG	3 cut(s)	474, 528, 538
TseFI	GTSAC	3 cut(s)	181, 463, 664
TseI	GCWGC	2 cut(s)	298, 730
Tsp45I	GTSAC	3 cut(s)	181, 463, 664
TspDTI	ATGAA	5 cut(s)	17, 119, 209, 596, 753
TspRI	CASTG	3 cut(s)	474, 528, 538
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.