Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

40232740 .. 40233828

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0338700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGATACCATCAGTTGGAATCCTAAGCGTCGAGGTTTTTACTCTGTTCGTACTGCTTATTGGATAGCCAGGGCAGTGGTACTGGATAACTGTTTGGCATCTCCCTCTAGTGGTGATCCCTATGTAGAGCTGTGGAAGAGATTGTGGAAGGCAAAGGTGCCGGGTAAGGTTCAAATCTGCCTTTCGCGTGCATGCAATGATTTATTACCAACTCATGCCAAGCTAACTACCAAAGGATACACTGGAGATTTAAGTTATGTATTGTGTTCGCATCGCTATGAGGATTGCACCCATATATTCTGTAAGTGCCCCATTGCCACCTTCATTCTATCAGCTCCACCGTTTAATTTGAGTGAAAGTCTTCTTCCAAATATCCATTTCAAGGAATGGATGTTGGAGCGAGCCATTCACCTGAAATCTGATATCTTTGAAAAGTTGGTCATCATTTTGTGGGCAATTTGGAAGAATAGGAACAATAAATTATGGAATGATGCTTGTCACTCAGCAAGTGATTTGGTGTTGGGAGCCTTTACATGGTTGGAGAAGTTTCAGAAGGTTAGACAGTTAGATGCAAAGCCGAAACAACCTCGTCCAAGCCAAAGATGGGTACCAGTCGCAAATGGAAAATGCAAACTGAATGTAGATGGCAGTTTTTTGCCTGCAAATAATGTGGGAGGAGTTGGGGTGGTGCTGCGTGATGATACTGGGGTGTTCCGTGCTGCTTTGACATCCCCAATTACGCATGTATTATCTCCAAAGCAAGTTGAGCTCCATGCTATTAAGCGGGGTCTGCTATTACTGCAACAGTTGCATGTTGAAGAGGCCATTGTGGAAACAGATTGTTTGCAAGCTACTATGGATGTCACAGATGTGCATTATACCAGATTGCCTGAGAGAGGTTTACTGGATGATATAAAACAGCTCCTCCAACATATGACAATTGAGTATGCCCCCCGAACGTGCAATATTGCAGCACACCGTTTAGCTAATATAGCTTATGAGGCTGGTACTAGTTCTTATTGGGTTGACAGTGCACCAGATTGCATTCTGGATGTGCTTGCATTTGATTGTAATCAACCCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

362

Amino Acids

40.97

Weight (kDa)

8.35

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	41 - 109	2.1e-11	zinc-binding in reverse transcriptase
RVT_3	PF13456	214 - 332	2.2e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	610
AccB1I	GGYRCC	2 cut(s)	160, 610
AccB7I	CCANNNNNTGG	1 cut(s)	18
AccII	CGCG	1 cut(s)	190
AciI	CCGC	1 cut(s)	787
AclWI	GGATC	1 cut(s)	113
AfaI	GTAC	4 cut(s)	55, 84, 612, 1012
AfiI	CCNNNNNNNGG	6 cut(s)	18, 113, 385, 537, 607, 899
AgsI	TTSAA	4 cut(s)	176, 385, 434, 821
AhlI	ACTAGT	1 cut(s)	1013
AjnI	CCWGG	1 cut(s)	71
AleI	CACNNNNGTG	1 cut(s)	872
AluBI	AGCT	8 cut(s)	133, 226, 338, 772, 854, 925, 989, 998
AluI	AGCT	8 cut(s)	133, 226, 338, 772, 854, 925, 989, 998
Alw21I	GWGCWC	2 cut(s)	774, 1039
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	1035
ApeKI	GCWGC	3 cut(s)	694, 722, 974
Asp700I	GAANNNNTTC	1 cut(s)	363
Asp718I	GGTACC	1 cut(s)	610
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	128, 404
BaeGI	GKGCMC	2 cut(s)	314, 1039
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BanI	GGYRCC	2 cut(s)	160, 610
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	774, 1039
BbvI	GCAGC	3 cut(s)	681, 709, 986
BccI	CCATC	3 cut(s)	20, 600, 641
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	1013
BfaI	CTAG	2 cut(s)	111, 1014
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	695, 723, 975
BlsI	GCNGC	3 cut(s)	696, 724, 976
Bme1390I	CCNGG	2 cut(s)	73, 165
BmiI	GGNNCC	3 cut(s)	162, 529, 612
BmrFI	CCNGG	2 cut(s)	73, 165
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	110, 283, 484, 562
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	4 cut(s)	672, 702, 912, 942
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 113, 385, 537, 607, 899
Bse1I	ACTGG	5 cut(s)	90, 250, 614, 712, 912
Bse3DI	GCAATG	2 cut(s)	205, 315
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	5 cut(s)	399, 731, 868, 916, 1060
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	6 cut(s)	18, 113, 385, 537, 607, 899
BseMI	GCAATG	2 cut(s)	205, 315
BseMII	CTCAG	2 cut(s)	519, 885
BseNI	ACTGG	5 cut(s)	90, 250, 614, 712, 912
BseRI	GAGGAG	2 cut(s)	693, 917
BseSI	GKGCMC	2 cut(s)	314, 1039
BseXI	GCAGC	3 cut(s)	681, 709, 986
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	827
BshNI	GGYRCC	2 cut(s)	160, 610
BsiHKAI	GWGCWC	2 cut(s)	774, 1039
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	6 cut(s)	18, 113, 385, 537, 607, 899
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	1 cut(s)	827
Bsp1286I	GDGCHC	3 cut(s)	314, 774, 1039
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	2 cut(s)	518, 886
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	162, 529, 612
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	160, 610
BsrDI	GCAATG	2 cut(s)	205, 315
BsrI	ACTGG	5 cut(s)	90, 250, 614, 712, 912
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	6 cut(s)	95, 345, 567, 810, 983, 1034
Bst6I	CTCTTC	2 cut(s)	134, 816
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstC8I	GCNNGC	6 cut(s)	192, 196, 405, 663, 852, 1062
BstDEI	CTNAG	3 cut(s)	27, 505, 894
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	5 cut(s)	399, 731, 868, 916, 1060
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	6 cut(s)	769, 793, 802, 811, 995, 1004
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	3 cut(s)	198, 749, 818
BstSCI	CCNGG	2 cut(s)	71, 163
BstSLI	GKGCMC	2 cut(s)	314, 1039
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	681, 709, 986
BstV2I	GAAGAC	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	399, 731, 868, 916, 1060
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 243, 1039
Cac8I	GCNNGC	6 cut(s)	192, 196, 405, 663, 852, 1062
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	54, 83, 611, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	6 cut(s)	195, 218, 537, 746, 776, 815
CviQI	GTAC	4 cut(s)	54, 83, 611, 1011
DdeI	CTNAG	3 cut(s)	27, 505, 894
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	134, 816
EarI	CTCTTC	2 cut(s)	134, 816
Ecl136II	GAGCTC	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	774
Eco32I	GATATC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	774
FaeI	CATG	6 cut(s)	198, 221, 540, 749, 779, 818
FatI	CATG	6 cut(s)	194, 217, 536, 745, 775, 814
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	936
Fnu4HI	GCNGC	3 cut(s)	695, 723, 975
FokI	GGATG	5 cut(s)	406, 718, 875, 923, 1067
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	695, 723, 975
FspBI	CTAG	2 cut(s)	111, 1014
GluI	GCNGC	3 cut(s)	695, 723, 975
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	198, 221, 540, 749, 779, 818
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	128, 404
Hpy166II	GTNNAC	3 cut(s)	905, 1030, 1037
Hpy188I	TCNGA	2 cut(s)	424, 555
Hpy188III	TCNNGA	1 cut(s)	1052
Hpy8I	GTNNAC	3 cut(s)	905, 1030, 1037
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	145, 334, 550
HpyCH4III	ACNGT	6 cut(s)	95, 345, 567, 810, 983, 1034
HpyCH4IV	ACGT	1 cut(s)	962
HpyF10VI	GCNNNNNNNGC	6 cut(s)	769, 793, 802, 811, 995, 1004
HpyF3I	CTNAG	3 cut(s)	27, 505, 894
HpySE526I	ACGT	1 cut(s)	962
Hsp92II	CATG	6 cut(s)	198, 221, 540, 749, 779, 818
KpnI	GGTACC	1 cut(s)	614
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	5 cut(s)	343, 400, 527, 777, 930
Lsp1109I	GCAGC	3 cut(s)	681, 709, 986
LweI	GCATC	4 cut(s)	110, 283, 484, 562
MaeI	CTAG	2 cut(s)	111, 1014
MaeII	ACGT	1 cut(s)	962
MaeIII	GTNAC	2 cut(s)	500, 865
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	6 cut(s)	17, 151, 356, 359, 478, 833
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	3 cut(s)	314, 774, 1039
MluCI	AATT	5 cut(s)	349, 459, 482, 738, 942
MmeI	TCCRAC	3 cut(s)	378, 522, 955
MnlI	CCTC	9 cut(s)	29, 118, 277, 600, 671, 817, 893, 938, 997
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	3 cut(s)	254, 348, 783
MslI	CAYNNNNRTG	2 cut(s)	279, 872
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	73, 165
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	6 cut(s)	769, 793, 802, 811, 995, 1004
NciI	CCSGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	936
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	6 cut(s)	198, 221, 540, 749, 779, 818
NlaIV	GGNNCC	3 cut(s)	162, 529, 612
NmuCI	GTSAC	2 cut(s)	500, 865
NspI	RCATGY	3 cut(s)	198, 749, 818
OliI	CACNNNNGTG	1 cut(s)	872
PaeI	GCATGC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	1047
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	696, 724, 976
Psp124BI	GAGCTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	162, 529, 612
RsaI	GTAC	4 cut(s)	55, 84, 612, 1012
RsaNI	GTAC	4 cut(s)	54, 83, 611, 1011
RseI	CAYNNNNRTG	2 cut(s)	279, 872
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	3 cut(s)	254, 348, 783
SatI	GCNGC	3 cut(s)	695, 723, 975
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	73, 165
SduI	GDGCHC	3 cut(s)	314, 774, 1039
SfaNI	GCATC	4 cut(s)	110, 283, 484, 562
SmiMI	CAYNNNNRTG	2 cut(s)	279, 872
SpeI	ACTAGT	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	198
Sse9I	AATT	5 cut(s)	349, 459, 482, 738, 942
SsiI	CCGC	1 cut(s)	787
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	2 cut(s)	111, 1014
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	71, 163
TaaI	ACNGT	6 cut(s)	95, 345, 567, 810, 983, 1034
TaiI	ACGT	1 cut(s)	965
TaqI	TCGA	1 cut(s)	34
TasI	AATT	5 cut(s)	349, 459, 482, 738, 942
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	254, 348, 783
Tru9I	TTAA	3 cut(s)	254, 348, 783
TscAI	CASTG	3 cut(s)	84, 250, 1039
TseFI	GTSAC	2 cut(s)	500, 865
TseI	GCWGC	3 cut(s)	694, 722, 974
Tsp45I	GTSAC	2 cut(s)	500, 865
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	3 cut(s)	84, 250, 1039
Van91I	CCANNNNNTGG	1 cut(s)	18
VneI	GTGCAC	1 cut(s)	1035
XagI	CCTNNNNNAGG	1 cut(s)	897
XceI	RCATGY	3 cut(s)	198, 749, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	111, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.