Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

5762126 .. 5767760

Gene Structure 5635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTCTCGCGGAAACCGCTATTAAACGACTACGAGATGATAGCACGGACATTGGTGATGCGCACCAATCTCCCCGTTTCTACTTGGGGATATGCAATATTTCATGCGGTGACACTAATTCGTCTACGACCCACCGCAACCCAATCTTATTCTCGCATTACGCCTAGTGACTTACAATCAAACGCGTGGTCGACTACGCCGTCAAAATCCGAGTCAAGTCCGACAAGGCAAAGCCTTCCCAACCCAAAACCCACATCGTATCTCGTTCAAACTCGCACGAACTCTAACCCACCACCACTTTTTTTCGGTTTTTGTCTTTCACAGAGCGGCGTGGAGACCCAGAACGTGAAGATGTCGATGAACCCATTTTGCGAGATCGCTTTGGAAGAGGCCCTTCGGATCAAAGAGTCGGGCTTGGCCTCCGAGGTCGTGGCGGTCACCATGGGCATGAAACAGAGCGTCGATACGTTAAGGACGGGTCTGGCTATGGGCGCTGATAGGGCTATACACGTGGAGACTAGTGGGCAGTTATACCCTTTATCGGTTGCTAAACTTTTGAGAGCTTTAGTGGAGCTTGAGAAGCCTGGCCTTCTCATTCTGGGCAAACAGGCTATTGATGATGATTGCAATCAAACTGGGCAAATGGTGGCAGGGCTGTTGAACTGGCCTCAAGGCACTTTTGCTTCAAAGGTTGTGCTGGATAAGGAGAATCAGGTAGTGACAGTGGACAGAGAGGTAGATGGTGGTCTTGAGACTCTTTGTCTAGATTTACCAGCAGTGATTACCACTGATTTGAGGCTAAATCAACCAAGGTATGCAACACTCCCCAACATAATGAAAGCAAAATCAAAGGTCATAAAGAAGTTCACTCCACAGGATCTGAATGTGGAAATCAAATCCGACATAGAAGAGGTTCAAGTCACAGAACCTCCCAAGAGAAAAGCAGGGGTTATTGTTTCTTCCGTGGATGAGCTGATTGACAAGCTGAAAAATGAAGCCCGTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

336

Amino Acids

37.01

Weight (kDa)

8.25

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	111 - 293	5.1e-39	Electron transfer flavoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
Acc16I	TGCGCA	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	124, 191
AccII	CGCG	2 cut(s)	10, 185
AciI	CCGC	6 cut(s)	10, 17, 107, 135, 327, 434
AclWI	GGATC	2 cut(s)	407, 885
AcvI	CACGTG	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	2 cut(s)	183, 508
AgsI	TTSAA	4 cut(s)	269, 661, 687, 917
AhdI	GACNNNNNGTC	1 cut(s)	759
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	4 cut(s)	563, 574, 973, 985
AluI	AGCT	4 cut(s)	563, 574, 973, 985
Alw26I	GTCTC	4 cut(s)	10, 329, 509, 746
AlwI	GGATC	2 cut(s)	407, 885
AlwNI	CAGNNNCTG	1 cut(s)	880
AoxI	GGCC	4 cut(s)	390, 417, 586, 665
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 197, 205, 229
Asp700I	GAANNNNTTC	1 cut(s)	912
AspLEI	GCGC	2 cut(s)	63, 494
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	67, 121, 430
BbrPI	CACGTG	1 cut(s)	511
BccI	CCATC	1 cut(s)	734
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	585
BcoDI	GTCTC	4 cut(s)	10, 329, 509, 746
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	165, 519, 764
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	585
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	596, 654, 770
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	627
BsaI	GGTCTC	2 cut(s)	10, 329
BsaJI	CCNNGG	4 cut(s)	423, 441, 809, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	640, 668
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	423, 441, 809, 963
BseGI	GGATG	1 cut(s)	973
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseNI	ACTGG	2 cut(s)	640, 668
Bsh1236I	CGCG	2 cut(s)	10, 185
BshFI	GGCC	4 cut(s)	392, 419, 588, 667
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	4 cut(s)	10, 329, 509, 746
BsnI	GGCC	4 cut(s)	392, 419, 588, 667
Bso31I	GGTCTC	2 cut(s)	10, 329
Bsp143I	GATC	3 cut(s)	375, 399, 877
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	6 cut(s)	10, 17, 107, 135, 327, 434
BspANI	GGCC	4 cut(s)	392, 419, 588, 667
BspFNI	CGCG	2 cut(s)	10, 185
BspPI	GGATC	2 cut(s)	407, 885
BspTNI	GGTCTC	2 cut(s)	10, 329
BsrBI	CCGCTC	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	640, 668
BssECI	CCNNGG	4 cut(s)	423, 441, 809, 963
BssMI	GATC	3 cut(s)	375, 399, 877
BssT1I	CCWWGG	2 cut(s)	441, 809
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	724
Bst6I	CTCTTC	2 cut(s)	381, 903
BstBAI	YACGTR	1 cut(s)	511
BstDSI	CCRYGG	2 cut(s)	441, 963
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	973
BstFNI	CGCG	2 cut(s)	10, 185
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	2 cut(s)	63, 494
BstKTI	GATC	3 cut(s)	378, 402, 880
BstMAI	GTCTC	4 cut(s)	10, 329, 509, 746
BstMBI	GATC	3 cut(s)	375, 399, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 491, 500, 580
BstNI	CCWGG	1 cut(s)	585
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	2 cut(s)	10, 185
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BsuRI	GGCC	4 cut(s)	392, 419, 588, 667
BtgI	CCRYGG	2 cut(s)	441, 963
BtsCI	GGATG	1 cut(s)	973
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	729, 783, 786
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	2 cut(s)	63, 494
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	448
CviAII	CATG	3 cut(s)	104, 442, 448
DpnI	GATC	3 cut(s)	377, 401, 879
DpnII	GATC	3 cut(s)	375, 399, 877
DrdI	GACNNNNNNGTC	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	759
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	381, 903
Eam1105I	GACNNNNNGTC	1 cut(s)	759
EarI	CTCTTC	2 cut(s)	381, 903
Eco130I	CCWWGG	2 cut(s)	441, 809
Eco31I	GGTCTC	2 cut(s)	10, 329
Eco72I	CACGTG	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	441, 809
ErhI	CCWWGG	2 cut(s)	441, 809
FaeI	CATG	3 cut(s)	107, 445, 451
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	3 cut(s)	103, 441, 447
FblI	GTMKAC	2 cut(s)	124, 191
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	1 cut(s)	980
Fsp4HI	GCNGC	1 cut(s)	328
FspAI	RTGCGCAY	1 cut(s)	62
FspBI	CTAG	3 cut(s)	165, 519, 764
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	2 cut(s)	62, 493
GluI	GCNGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	392, 419, 588, 667
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	2 cut(s)	63, 494
Hin1II	CATG	3 cut(s)	107, 445, 451
Hin6I	GCGC	2 cut(s)	61, 492
HinP1I	GCGC	2 cut(s)	61, 492
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	4 cut(s)	212, 407, 709, 754
HphI	GGTGA	3 cut(s)	67, 121, 430
Hpy166II	GTNNAC	4 cut(s)	125, 192, 727, 867
Hpy188I	TCNGA	6 cut(s)	211, 222, 399, 424, 882, 901
Hpy188III	TCNNGA	2 cut(s)	749, 764
Hpy8I	GTNNAC	4 cut(s)	125, 192, 727, 867
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	245, 404, 599
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4IV	ACGT	3 cut(s)	345, 467, 510
HpyCH4V	TGCA	3 cut(s)	95, 627, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 491, 500, 580
HpySE526I	ACGT	3 cut(s)	345, 467, 510
Hsp92II	CATG	3 cut(s)	107, 445, 451
HspAI	GCGC	2 cut(s)	61, 492
Kzo9I	GATC	3 cut(s)	375, 399, 877
LmnI	GCTCC	1 cut(s)	571
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	165, 519, 764
MaeII	ACGT	3 cut(s)	345, 467, 510
MaeIII	GTNAC	5 cut(s)	109, 167, 436, 718, 919
MalI	GATC	3 cut(s)	377, 401, 879
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	3 cut(s)	375, 399, 877
MboII	GAAGA	4 cut(s)	361, 398, 920, 951
MflI	RGATCY	1 cut(s)	877
MluCI	AATT	1 cut(s)	117
MluI	ACGCGT	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	221, 416, 748
MmeI	TCCRAC	2 cut(s)	245, 924
MnlI	CCTC	8 cut(s)	382, 418, 430, 678, 727, 789, 904, 939
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	2 cut(s)	23, 470
MslI	CAYNNNNRTG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	2 cut(s)	10, 185
MwoI	GCNNNNNNNGC	4 cut(s)	16, 491, 500, 580
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	375, 399, 877
NlaIII	CATG	3 cut(s)	107, 445, 451
NmuCI	GTSAC	5 cut(s)	109, 167, 436, 718, 919
NsbI	TGCGCA	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	1 cut(s)	709
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	3 cut(s)	220, 415, 748
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	3 cut(s)	220, 415, 748
Ppu21I	YACGTR	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	583
PspCI	CACGTG	1 cut(s)	511
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	877
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	23, 470
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	3 cut(s)	375, 399, 877
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	3 cut(s)	221, 416, 748
ScrFI	CCNGG	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	575, 669, 749
SmoI	CTYRAG	3 cut(s)	575, 669, 749
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	6 cut(s)	10, 17, 107, 135, 327, 434
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	3 cut(s)	165, 519, 764
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	441, 809
TaaI	ACNGT	1 cut(s)	724
TaiI	ACGT	3 cut(s)	348, 470, 513
TaqI	TCGA	3 cut(s)	191, 356, 462
TasI	AATT	1 cut(s)	117
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	23, 470
Tru9I	TTAA	2 cut(s)	23, 470
TscAI	CASTG	3 cut(s)	729, 783, 793
TseFI	GTSAC	5 cut(s)	109, 167, 436, 718, 919
Tsp45I	GTSAC	5 cut(s)	109, 167, 436, 718, 919
TspDTI	ATGAA	5 cut(s)	92, 374, 464, 851, 1008
TspGWI	ACGGA	2 cut(s)	61, 952
TspRI	CASTG	3 cut(s)	729, 783, 793
XbaI	TCTAGA	1 cut(s)	763
XmiI	GTMKAC	2 cut(s)	124, 191
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	3 cut(s)	165, 519, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.