Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

14527450 .. 14532005

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGATAATGGTATCATTGAAGCGCGTCGTCGACTACGCAGTCAAAATCCGAGTCAAACCGGACAAGAGCGGCGTGGAAACCCAGAACGTGAAGATGTCGATGAACCCCTTCTGCGAGATTGCTTTGGAAGAGGCCCTCCGGATTAAAGAGTCCGGGATGGCATCGGAGGTGGTGGCTGTCTCCATGGGACTAAAACAGTGCGTGGATACGCTCAGGACAGGGTTGGCTATGGGCGCCGATAGGGGAATCCATGTGGAGACTGATGGCCCTCTCTACCCTTTATCCGTTGCTAAGCTTCTGAGAGCTCTCGTGAAGGTTGAGAAGCCTGGACTTCTTATCCTGGGCAAACAGGCTATCGACGATGATTGCAATCAAACAGGGCAAATGGTTGCAGGGCTTCTGAACTGGCCTCAAGGGACCTTTGCTTCAAAGGTTGTGCTGGATAAGGAGAAGCAGGTAGTGACAGTAGACAGAGAGGTAGATGGTGGTCTCGAGACTTTGTGTCTAGATTTGCCAGCAGTGATCACCACCGATCTGAGGCTAAACCAACCGAGGTATGCAACACTCCCAAACATAATGAAAGCGAAATCAAAGGTCATAAAGAAGTACACTCCACAGGATCTGAATGTGGAACTCAAATCCGATATAGAGCAGGTTCAAGTCACTGAACCTCCCAAGAGAAAAGCAGGGGTTATCGTTTCTTCCGTAGACGAGCTGATTGACAAGCTTAAGAACGAAGCCCATGTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

252

Amino Acids

27.54

Weight (kDa)

8.23

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	2 cut(s)	448, 646
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	3 cut(s)	33, 471, 711
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	540
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	3 cut(s)	22, 432, 662
AhdI	GACNNNNNGTC	1 cut(s)	504
AjnI	CCWGG	2 cut(s)	328, 342
AluBI	AGCT	4 cut(s)	298, 308, 718, 730
AluI	AGCT	4 cut(s)	298, 308, 718, 730
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	4 cut(s)	187, 254, 491, 497
AlwI	GGATC	1 cut(s)	630
AlwNI	CAGNNNCTG	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	3 cut(s)	135, 268, 410
ArsI	GACNNNNNNTTYG	3 cut(s)	39, 71, 732
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	27, 239
AspS9I	GGNCC	3 cut(s)	136, 269, 420
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	3 cut(s)	154, 260, 479
BciT130I	CCWGG	2 cut(s)	330, 344
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	4 cut(s)	187, 254, 491, 497
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	731
BfuAI	ACCTGC	2 cut(s)	448, 646
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	3 cut(s)	157, 330, 344
Bme18I	GGWCC	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	136, 269, 420
BmiI	GGNNCC	2 cut(s)	238, 421
BmrFI	CCNGG	3 cut(s)	157, 330, 344
BmsI	GCATC	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	186, 343, 554
BsaWI	WCCGGW	2 cut(s)	61, 141
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	330, 344
BseDI	CCNNGG	3 cut(s)	186, 343, 554
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	229, 293, 530
BseNI	ACTGG	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	137, 270, 412
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	3 cut(s)	62, 142, 156
BslFI	GGGAC	2 cut(s)	204, 433
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	4 cut(s)	187, 254, 491, 497
BsmFI	GGGAC	2 cut(s)	204, 433
BsnI	GGCC	3 cut(s)	137, 270, 412
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	525, 535, 622
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	137, 270, 412
BspCNI	CTCAG	3 cut(s)	228, 294, 531
BspEI	TCCGGA	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	238, 421
BspMI	ACCTGC	2 cut(s)	448, 646
BspPI	GGATC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	186, 343, 554
BssMI	GATC	3 cut(s)	525, 535, 622
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	330, 344
Bst4CI	ACNGT	2 cut(s)	201, 469
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	215, 294, 302, 539
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	27, 239
BstKTI	GATC	3 cut(s)	528, 538, 625
BstMAI	GTCTC	4 cut(s)	187, 254, 491, 497
BstMBI	GATC	3 cut(s)	525, 535, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	330, 344
BstSCI	CCNGG	3 cut(s)	155, 328, 342
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	137, 270, 412
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	206, 528, 666
BveI	ACCTGC	2 cut(s)	448, 646
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	2 cut(s)	27, 239
Cfr13I	GGNCC	3 cut(s)	136, 269, 420
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	3 cut(s)	187, 254, 746
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	4 cut(s)	215, 294, 302, 539
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	3 cut(s)	527, 537, 624
DpnII	GATC	3 cut(s)	525, 535, 622
DrdI	GACNNNNNNGTC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	136, 420
EcoRII	CCWGG	2 cut(s)	328, 342
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	190, 257, 749
FaiI	YATR	8 cut(s)	188, 233, 255, 561, 578, 602, 650, 747
FaqI	GGGAC	2 cut(s)	204, 433
FatI	CATG	3 cut(s)	186, 253, 745
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	3 cut(s)	33, 471, 711
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	2 cut(s)	26, 238
GluI	GCNGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	137, 270, 412
HapII	CCGG	3 cut(s)	62, 142, 156
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	27, 239
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	190, 257, 749
Hin6I	GCGC	2 cut(s)	25, 237
HinP1I	GCGC	2 cut(s)	25, 237
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	296, 728
HinfI	GANTC	3 cut(s)	54, 152, 249
HpaII	CCGG	3 cut(s)	62, 142, 156
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	4 cut(s)	34, 472, 612, 712
Hpy188I	TCNGA	7 cut(s)	53, 169, 303, 405, 540, 627, 646
Hpy188III	TCNNGA	6 cut(s)	142, 217, 313, 494, 496, 509
Hpy8I	GTNNAC	4 cut(s)	34, 472, 612, 712
Hpy99I	CGWCG	3 cut(s)	32, 35, 365
HpyAV	CCTTC	2 cut(s)	121, 310
HpyCH4III	ACNGT	2 cut(s)	201, 469
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	372, 395, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	4 cut(s)	215, 294, 302, 539
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	190, 257, 749
HspAI	GCGC	2 cut(s)	25, 237
KasI	GGCGCC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	525, 535, 622
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	463, 664
MalI	GATC	3 cut(s)	527, 537, 624
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	525, 535, 622
MboII	GAAGA	4 cut(s)	16, 106, 143, 696
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	310
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	63, 161
MnlI	CCTC	9 cut(s)	127, 149, 163, 282, 423, 472, 534, 549, 684
MroI	TCCGGA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	147, 732, 754
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	3 cut(s)	62, 142, 156
MspR9I	CCNGG	3 cut(s)	157, 330, 344
MvaI	CCWGG	2 cut(s)	330, 344
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	236
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	525, 535, 622
NlaIII	CATG	3 cut(s)	190, 257, 749
NlaIV	GGNNCC	2 cut(s)	238, 421
NmuCI	GTSAC	2 cut(s)	463, 664
PaeR7I	CTCGAG	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	2 cut(s)	62, 160
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	2 cut(s)	62, 160
PpuMI	RGGWCCY	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	328, 342
PspGI	CCWGG	2 cut(s)	328, 342
PspN4I	GGNNCC	2 cut(s)	238, 421
PspPI	GGNCC	3 cut(s)	136, 269, 420
PspPPI	RGGWCCY	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	147, 732, 754
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	525, 535, 622
Sau96I	GGNCC	3 cut(s)	136, 269, 420
SchI	GAGTC	2 cut(s)	63, 161
ScrFI	CCNGG	3 cut(s)	157, 330, 344
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	173
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	420
SlaI	CTCGAG	1 cut(s)	494
SmlI	CTYRAG	3 cut(s)	414, 494, 731
SmoI	CTYRAG	3 cut(s)	414, 494, 731
SsiI	CCGC	1 cut(s)	72
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	155, 328, 342
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	201, 469
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	33, 101, 360, 495
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	147, 732, 754
Tru9I	TTAA	3 cut(s)	147, 732, 754
TscAI	CASTG	3 cut(s)	206, 528, 673
TseFI	GTSAC	2 cut(s)	463, 664
Tsp45I	GTSAC	2 cut(s)	463, 664
TspDTI	ATGAA	3 cut(s)	17, 119, 596
TspGWI	ACGGA	2 cut(s)	277, 697
TspRI	CASTG	3 cut(s)	206, 528, 673
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	420
XbaI	TCTAGA	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	494
XmiI	GTMKAC	3 cut(s)	33, 471, 711
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.