Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001800.1

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Forward (+)

73713 .. 77732

Gene Structure 4020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001800.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgaagataatggtggcaatcaaacgcgtggtcgactacgccgtcaaaatccgagtcaagtccgacaagagcggcgtggagacccagaacgtgaagatgtcgatgaacccattttgcgagatcgctttggaagaggcccttcggatcaaagagtcgggcttggcctccgaggtcgtggcggtcaccatgggcatgaaacagagcgtcgatacgttaaggacgggtctggctatgggcgctgatagggctatacacgtggagactagtgggcagttataccctttatcggttgctaagcttttgagagctttagtggagcttgagaagcctggtcttctcattctgggcaaacaggctattgatgatgattgcaatcaaactgggcaaatggtggcagggctgttgaactggcctcaaggcacttttgcttcaaaggttgtgctggataaggagaagcaggtagtgacagtggacagagaggtagatggtggtctggagactctctgtctagatttaccagcagtgattaccactgatttgaggctaaatcaaccaaggtatgcaacactccccaacataatgaaagcaaaatcaaaggtcataaagaagttcactccacaggatctgaatgtggaaatcaaatccgacatagaagaggttcaagtcacagaacctcccaagagaaaagcaggggttatcgtttcttctgtggatgagctgattgacaagctgaaaaacgaagcccgtgtcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

251

Amino Acids

27.55

Weight (kDa)

7.62

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	72, 179
AclWI	GGATC	2 cut(s)	152, 630
AcvI	CACGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	2 cut(s)	25, 253
AgsI	TTSAA	3 cut(s)	406, 432, 662
AhdI	GACNNNNNGTC	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	5 cut(s)	298, 308, 319, 718, 730
AluI	AGCT	5 cut(s)	298, 308, 319, 718, 730
Alw26I	GTCTC	3 cut(s)	74, 254, 491
AlwI	GGATC	2 cut(s)	152, 630
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	3 cut(s)	135, 162, 410
ArsI	GACNNNNNNTTYG	5 cut(s)	15, 39, 47, 71, 732
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	326
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	74, 254, 491
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	264, 509
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	330
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	341, 399
BsaAI	YACGTR	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	168, 186, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	385, 413
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	168, 186, 554
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	385, 413
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	137, 164, 412
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	74, 254, 491
BsnI	GGCC	3 cut(s)	137, 164, 412
Bso31I	GGTCTC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	120, 144, 622
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	72, 179
BspANI	GGCC	3 cut(s)	137, 164, 412
BspFNI	CGCG	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	152, 630
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	385, 413
BssECI	CCNNGG	3 cut(s)	168, 186, 554
BssMI	GATC	3 cut(s)	120, 144, 622
BssT1I	CCWWGG	2 cut(s)	186, 554
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	2 cut(s)	126, 648
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	123, 147, 625
BstMAI	GTCTC	3 cut(s)	74, 254, 491
BstMBI	GATC	3 cut(s)	120, 144, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 325
BstNI	CCWGG	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	137, 164, 412
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	474, 528, 531
BveI	ACCTGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	187, 193
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	122, 146, 624
DpnII	GATC	3 cut(s)	120, 144, 622
DrdI	GACNNNNNNGTC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	126, 648
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	2 cut(s)	126, 648
Eco130I	CCWWGG	2 cut(s)	186, 554
Eco31I	GGTCTC	1 cut(s)	74
Eco72I	CACGTG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	186, 554
ErhI	CCWWGG	2 cut(s)	186, 554
FaeI	CATG	2 cut(s)	190, 196
FaiI	YATR	9 cut(s)	188, 194, 233, 251, 277, 561, 578, 602, 650
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	2 cut(s)	186, 192
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	264, 509
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	137, 164, 412
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	190, 196
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	3 cut(s)	54, 152, 499
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	34, 472, 612
Hpy188I	TCNGA	6 cut(s)	53, 64, 144, 169, 627, 646
Hpy188III	TCNNGA	2 cut(s)	494, 509
Hpy8I	GTNNAC	3 cut(s)	34, 472, 612
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	90, 212, 255
HpyCH4V	TGCA	2 cut(s)	372, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 325
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	3 cut(s)	90, 212, 255
Hsp92II	CATG	2 cut(s)	190, 196
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	120, 144, 622
LmnI	GCTCC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	264, 509
MaeII	ACGT	3 cut(s)	90, 212, 255
MaeIII	GTNAC	3 cut(s)	181, 463, 664
MalI	GATC	3 cut(s)	122, 146, 624
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	120, 144, 622
MboII	GAAGA	6 cut(s)	16, 106, 143, 326, 665, 696
MflI	RGATCY	1 cut(s)	622
MluI	ACGCGT	1 cut(s)	25
MlyI	GAGTC	3 cut(s)	63, 161, 493
MmeI	TCCRAC	2 cut(s)	87, 669
MnlI	CCTC	8 cut(s)	127, 163, 175, 423, 472, 534, 649, 684
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 325
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	120, 144, 622
NlaIII	CATG	2 cut(s)	190, 196
NmuCI	GTSAC	3 cut(s)	181, 463, 664
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	657
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	3 cut(s)	62, 160, 493
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	3 cut(s)	62, 160, 493
Ppu21I	YACGTR	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	120, 144, 622
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	3 cut(s)	63, 161, 493
ScrFI	CCNGG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	320, 414
SmoI	CTYRAG	2 cut(s)	320, 414
SpeI	ACTAGT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	72, 179
SspMI	CTAG	2 cut(s)	264, 509
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	186, 554
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	93, 215, 258
TaqI	TCGA	3 cut(s)	33, 101, 207
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	3 cut(s)	474, 528, 538
TseFI	GTSAC	3 cut(s)	181, 463, 664
Tsp45I	GTSAC	3 cut(s)	181, 463, 664
TspDTI	ATGAA	4 cut(s)	17, 119, 209, 596
TspRI	CASTG	3 cut(s)	474, 528, 538
XbaI	TCTAGA	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	264, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.