Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

7811589 .. 7816019

Gene Structure 4431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCGTTACGAAACATATCTCTTCTTCTCACTCTCATTCTCTCAAGTCTGTCTCACCATAACAGATCATCCAACTTCAATCTCTTTAACCCATTACCATTTCACTCTCACACCCACCACCGCTCAAGCATGAAGATAATGGTAGCAATCAAACGCGTGGTCGACTACGCCGTCAAAATCCGAGTCAAGTCCGACAAGAGCGGCGTGGAGACCCAGAACGTGAAGATGTCGATGAACCCATTTTGCGAGATCGCTTTGGAAGAGGCCCTTCGGATCAAAGAGTCGGGCTTGGCCTCCGAGGTCGTGGCGGTCACCATGGGCATGAAACAGAGCGTCGATACGTTAAGGACGGGTCTGGCTATGGGGGCTGATAGGGCTATACACGTGGAGACTAGTGGGCAGTTATACCCTTTATCGGTTGCTAAGCTTTTGAGAGCTTTAGTGGAGCTTGAGAAGCCTGGTCTTCTCATTCTGGGCAAACAGGCTATTGATGATGATTGCAATCAAACTGGGCAAATGGTGGCAGGGCTGTTGAACTGGCCTCAAGGCACTTTTGCTTCAAAGGTTGTGCTGGATAAGGAGAAGCAGGTAGTGACAGTGGACAGAGAGGTAGATGGGGGTCTTGAGACTCTCTGTCTAGATTTACCAGCAGTGATTACCACTGATTTGAGGCTAAATCAACCAAGGTATGCAACACTCCCCAACATAATGAAAGCAAAATCAAAGGTCATAAAGAAGTTCACTCCACAGGATCTGAATGTGGAAATCAAATCCGACATAGAAGAGGTTCAAGTCACAGAACCTCCCAAGAGAAAAGCAGGGGTTATCGTTTCTTCTGTGGATGAGCTGATTGACAAGCTGAAAAACGAAGCCCGTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

294

Amino Acids

32.51

Weight (kDa)

8.85

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	69 - 251	2.5e-39	Electron transfer flavoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	577
AccBSI	CCGCTC	2 cut(s)	123, 201
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	121, 201, 308
AclWI	GGATC	2 cut(s)	281, 759
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	2 cut(s)	154, 382
AgsI	TTSAA	4 cut(s)	79, 535, 561, 791
AhdI	GACNNNNNGTC	1 cut(s)	633
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	427, 437, 448, 847, 859
AluI	AGCT	5 cut(s)	427, 437, 448, 847, 859
Alw26I	GTCTC	4 cut(s)	57, 203, 383, 620
AlwI	GGATC	2 cut(s)	281, 759
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	3 cut(s)	264, 291, 539
ArsI	GACNNNNNNTTYG	5 cut(s)	144, 168, 176, 200, 861
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	47, 304
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	455
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	4 cut(s)	57, 203, 383, 620
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	2 cut(s)	393, 638
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	459
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	459
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	5 cut(s)	28, 109, 470, 528, 644
BsaAI	YACGTR	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	297, 315, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	514, 542
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	297, 315, 683
BseGI	GGATG	2 cut(s)	68, 847
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	2 cut(s)	514, 542
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	266, 293, 541
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	4 cut(s)	57, 203, 383, 620
BsnI	GGCC	3 cut(s)	266, 293, 541
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	65, 249, 273, 751
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	3 cut(s)	121, 201, 308
BspANI	GGCC	3 cut(s)	266, 293, 541
BspFNI	CGCG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	281, 759
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	2 cut(s)	123, 201
BsrI	ACTGG	2 cut(s)	514, 542
BssECI	CCNNGG	3 cut(s)	297, 315, 683
BssMI	GATC	4 cut(s)	65, 249, 273, 751
BssT1I	CCWWGG	2 cut(s)	315, 683
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	3 cut(s)	27, 255, 777
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	68, 847
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	4 cut(s)	68, 252, 276, 754
BstMAI	GTCTC	4 cut(s)	57, 203, 383, 620
BstMBI	GATC	4 cut(s)	65, 249, 273, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 374, 454
BstNI	CCWGG	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	266, 293, 541
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	68, 847
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	603, 657, 660
BveI	ACCTGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	322
CviAII	CATG	3 cut(s)	130, 316, 322
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	4 cut(s)	67, 251, 275, 753
DpnII	GATC	4 cut(s)	65, 249, 273, 751
DrdI	GACNNNNNNGTC	1 cut(s)	170
DriI	GACNNNNNGTC	1 cut(s)	633
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	3 cut(s)	27, 255, 777
Eam1105I	GACNNNNNGTC	1 cut(s)	633
EarI	CTCTTC	3 cut(s)	27, 255, 777
Eco130I	CCWWGG	2 cut(s)	315, 683
Eco31I	GGTCTC	1 cut(s)	203
Eco72I	CACGTG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	315, 683
ErhI	CCWWGG	2 cut(s)	315, 683
FaeI	CATG	3 cut(s)	133, 319, 325
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	3 cut(s)	129, 315, 321
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	2 cut(s)	55, 854
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	2 cut(s)	393, 638
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	3 cut(s)	266, 293, 541
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	3 cut(s)	133, 319, 325
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	183, 281, 628
HphI	GGTGA	2 cut(s)	47, 304
Hpy166II	GTNNAC	3 cut(s)	163, 601, 741
Hpy188I	TCNGA	6 cut(s)	182, 193, 273, 298, 756, 775
Hpy188III	TCNNGA	2 cut(s)	623, 638
Hpy8I	GTNNAC	3 cut(s)	163, 601, 741
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	3 cut(s)	219, 341, 384
HpyCH4V	TGCA	2 cut(s)	501, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 374, 454
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	3 cut(s)	219, 341, 384
Hsp92II	CATG	3 cut(s)	133, 319, 325
Kzo9I	GATC	4 cut(s)	65, 249, 273, 751
LmnI	GCTCC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	393, 638
MaeII	ACGT	3 cut(s)	219, 341, 384
MaeIII	GTNAC	4 cut(s)	6, 310, 592, 793
MalI	GATC	4 cut(s)	67, 251, 275, 753
MbiI	CCGCTC	2 cut(s)	123, 201
MboI	GATC	4 cut(s)	65, 249, 273, 751
MboII	GAAGA	8 cut(s)	14, 17, 145, 235, 272, 455, 794, 825
MflI	RGATCY	1 cut(s)	751
MluI	ACGCGT	1 cut(s)	154
MlyI	GAGTC	3 cut(s)	192, 290, 622
MmeI	TCCRAC	3 cut(s)	96, 216, 798
MnlI	CCTC	8 cut(s)	256, 292, 304, 552, 601, 663, 778, 813
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	2 cut(s)	87, 344
MslI	CAYNNNNRTG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	365, 374, 454
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	65, 249, 273, 751
NlaIII	CATG	3 cut(s)	133, 319, 325
NmuCI	GTSAC	3 cut(s)	310, 592, 793
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	786
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	3 cut(s)	191, 289, 622
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	3 cut(s)	191, 289, 622
Ppu21I	YACGTR	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	457
PspCI	CACGTG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	751
RseI	CAYNNNNRTG	1 cut(s)	320
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	87, 344
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	4 cut(s)	65, 249, 273, 751
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	3 cut(s)	192, 290, 622
ScrFI	CCNGG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	5 cut(s)	43, 124, 449, 543, 623
SmoI	CTYRAG	5 cut(s)	43, 124, 449, 543, 623
SpeI	ACTAGT	1 cut(s)	392
SsiI	CCGC	3 cut(s)	121, 201, 308
SspMI	CTAG	2 cut(s)	393, 638
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	315, 683
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	3 cut(s)	222, 344, 387
TaqI	TCGA	3 cut(s)	162, 230, 336
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	2 cut(s)	87, 344
Tru9I	TTAA	2 cut(s)	87, 344
TscAI	CASTG	3 cut(s)	603, 657, 667
TseFI	GTSAC	3 cut(s)	310, 592, 793
Tsp45I	GTSAC	3 cut(s)	310, 592, 793
TspDTI	ATGAA	4 cut(s)	146, 248, 338, 725
TspRI	CASTG	3 cut(s)	603, 657, 667
XbaI	TCTAGA	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	2 cut(s)	393, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.