Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011199

Physical Location & Seq

Genomic Coordinates Reverse (-)

6611160 .. 6615634

Gene Structure 4475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGATGAACCCATTTTGCGAGATCGCTTTGGAAGAGGCCCTTCGGATCAAAGAGTCGGGCTTGGCCTCCGAGGTCGTGGCGGTCACCATGGGCATGAAACAGAGCGTCGATACGTTAAGGACGGGTCTGGCTATGGGCGCTGATAGGGCTATACACGTGGAGACTAGTGGGCAGTTATACCCTTTATCGGTTGCTAAGCTTTTGAGAGCTTTAGTGGAGCTTGAGAAGCCTGGTCTTCTCATTCTGGGCAAACAGGCTATTGATGATGATTGCAATCAAACTGGGCAAATGGTGGCAGGGCTGTTGAACTGGCCTCAAGGCACTTTTGCTTCAAAGGTTGTGCTGGATAAGGAGAAGCAGGTAGTGACAGTGGACAGAGAGGTAGATGGTGGTCTTGAGACTCTCTGTCTAGATTTACCAGCAGTGATTACCACTGATTTGAGGCTAAATCAACCAAGGTATGCAACACTCCCCAACATAATGAAAGCAAAATCAAAGGTCATAAAGAAGTTCACTCCACAGGATCTGAATGTGGAAATCAAATCCGACATAGAAGAGGTTCAAGTCACAGAACCTCCCAAGAGAAAAGCAGGGGTTATCGTTTCTTCCGTGGATGAGCTGATTGACAAGCTGAAAAACGAAGCCCGTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

219

Amino Acids

23.94

Weight (kDa)

5.25

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	2 - 176	3.3e-38	Electron transfer flavoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43430 AT5G43430 AT5G43430 AT5G43430
fragaria_vesca	FvH4_4g03430 FvH4_4g03430
malus_domestica	MD13G1212500.v1.1
prunus_persica	Prupe.1G037500_v2.0.a1
pyrus_communis	pycom13g18430
rosa_chinensis	RchiOBHm_Chr4g0392411
rosa_laevigata	RLG00000009813
rosa_multiflora	Rmu_sc0001800.1_g000016
rosa_roxburghii	Rroxscaffold_5G00337590
rosa_rugosa	Rorug03G0338700 Rorug03G0338800
rosa_samantha	Rh4AG042500 Rh4BG037400 Rh4CG045300 Rh4DG039800
rosa_wichuraiana	Rw4G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	56, 534
AcvI	CACGTG	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	310, 336, 566
AhdI	GACNNNNNGTC	1 cut(s)	408
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	5 cut(s)	202, 212, 223, 622, 634
AluI	AGCT	5 cut(s)	202, 212, 223, 622, 634
Alw26I	GTCTC	2 cut(s)	158, 395
AlwI	GGATC	2 cut(s)	56, 534
AlwNI	CAGNNNCTG	1 cut(s)	529
AoxI	GGCC	3 cut(s)	39, 66, 314
ArsI	GACNNNNNNTTYG	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	230
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	158, 395
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	2 cut(s)	168, 413
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	352
BlpI	GCTNAGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	234
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	3 cut(s)	245, 303, 419
BsaAI	YACGTR	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	72, 90, 458, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	289, 317
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	72, 90, 458, 612
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	289, 317
BshFI	GGCC	3 cut(s)	41, 68, 316
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	158, 395
BsnI	GGCC	3 cut(s)	41, 68, 316
Bsp143I	GATC	3 cut(s)	24, 48, 526
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	41, 68, 316
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	56, 534
BsrI	ACTGG	2 cut(s)	289, 317
BssECI	CCNNGG	4 cut(s)	72, 90, 458, 612
BssMI	GATC	3 cut(s)	24, 48, 526
BssT1I	CCWWGG	2 cut(s)	90, 458
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	30, 552
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	2 cut(s)	90, 612
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	622
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	3 cut(s)	27, 51, 529
BstMAI	GTCTC	2 cut(s)	158, 395
BstMBI	GATC	3 cut(s)	24, 48, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 229
BstNI	CCWGG	1 cut(s)	234
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	41, 68, 316
BtgI	CCRYGG	2 cut(s)	90, 612
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	378, 432, 435
BveI	ACCTGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	529
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	97
CviAII	CATG	2 cut(s)	91, 97
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	26, 50, 528
DpnII	GATC	3 cut(s)	24, 48, 526
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	30, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	408
EarI	CTCTTC	2 cut(s)	30, 552
Eco130I	CCWWGG	2 cut(s)	90, 458
Eco72I	CACGTG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	90, 458
ErhI	CCWWGG	2 cut(s)	90, 458
FaeI	CATG	2 cut(s)	94, 100
FaiI	YATR	9 cut(s)	92, 98, 137, 155, 181, 465, 482, 506, 554
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	2 cut(s)	90, 96
FokI	GGATG	1 cut(s)	629
FspBI	CTAG	2 cut(s)	168, 413
GlaI	GCGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	41, 68, 316
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	94, 100
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	56, 403
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	376, 516
Hpy188I	TCNGA	4 cut(s)	48, 73, 531, 550
Hpy188III	TCNNGA	2 cut(s)	398, 413
Hpy8I	GTNNAC	2 cut(s)	376, 516
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	116, 159
HpyCH4V	TGCA	2 cut(s)	276, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 229
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	116, 159
Hsp92II	CATG	2 cut(s)	94, 100
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	24, 48, 526
LmnI	GCTCC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	168, 413
MaeII	ACGT	2 cut(s)	116, 159
MaeIII	GTNAC	3 cut(s)	85, 367, 568
MalI	GATC	3 cut(s)	26, 50, 528
MboI	GATC	3 cut(s)	24, 48, 526
MboII	GAAGA	4 cut(s)	47, 230, 569, 600
MflI	RGATCY	1 cut(s)	526
MlyI	GAGTC	2 cut(s)	65, 397
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	8 cut(s)	31, 67, 79, 327, 376, 438, 553, 588
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 229
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	24, 48, 526
NlaIII	CATG	2 cut(s)	94, 100
NmuCI	GTSAC	3 cut(s)	85, 367, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	561
PleI	GAGTC	2 cut(s)	64, 397
PmaCI	CACGTG	1 cut(s)	160
PmlI	CACGTG	1 cut(s)	160
PpsI	GAGTC	2 cut(s)	64, 397
Ppu21I	YACGTR	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	3 cut(s)	24, 48, 526
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	65, 397
ScrFI	CCNGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	3 cut(s)	224, 318, 398
SmoI	CTYRAG	3 cut(s)	224, 318, 398
SpeI	ACTAGT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	168, 413
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	90, 458
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	119, 162
TaqI	TCGA	2 cut(s)	5, 111
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	378, 432, 442
TseFI	GTSAC	3 cut(s)	85, 367, 568
Tsp45I	GTSAC	3 cut(s)	85, 367, 568
TspDTI	ATGAA	3 cut(s)	23, 113, 500
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	3 cut(s)	378, 432, 442
XbaI	TCTAGA	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	2 cut(s)	168, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.