Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Reverse (-)

4018356 .. 4020574

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04611.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGCATCAAAAACCGAAATCCAAATACAACCCGACCCGCCTCCGCCGCCCAACTCCGGCGACCCTCGTGCAATCTACGCCCGAGCCATCAGAACCCACAGCGCCGACCGCTCCCTCCACAACCACCTCATCACTCTCTGCTCCAAATCCACCCCCTCCTCCTTCCCTCTCCGCCTCTTCTCCCAAATCTCAATACCCAACGTCGTCTCATGGACGGCCCTGATCTCATCCCAATCCAACACCCTCGCCGCCCTCCGCCACTTCATCTCCATGCTCCGCCACCCCACCTCCCCCAACCAGCGCACATTCGCCACCCTCTTCAAAACCTGTGCTTCCCTCTCCTTCCTCTCCTTCGGCCTCTCACTCCACTCCCTCTCCCTGAAGCTCGGTCTCTCGTCGGAGCCGTATTCCGGATCCGCCCTCATTCACTTCTACTCGAAATGTGGGATGCCGGTTTATGCACGCAAGGTGCTCGACGAAATTCCCCAGAGAGATAGAGATGCCGTATGCTATGGTGCTGCGATTGTTGGGCTGGCGCAGAATTCCAGGCCCATTGATGCGCTTTCGGCTTTCGCTGACATGAAATGTAGAGATGTTGCGTCGAGTATGTATACTGTTTCGGGTGCGTTGAGGGCCGCAGCAGAGCTTGCGGCGCTGGAGCAATGTAGGATCATACATACTCATGTGGTTGTTATGGGGCTTGATGGGAATGTGGTTGTGGGGACTTCTTTGTTGGATGCGTATGGGAAGTCGGGGATGGTGTGTGATGCAAGGCAGGTTTTCGATGAGAGTAATTCACTGGGGGGAAGTCTTGTGGGGTGCAATGCTATGCTGGCGGCGTATGCACAGCAAGGAGATAAGGATTCTGCGCTCGAGCTGTTTTATAAAATGGAAGGTCGGGGGCTTGTTCCGGATGAATATAGCTTCTTAGCGATTTTGATGTGCCTTGGCAATGCAGGGTTGGTTTTGGAAACGGATTGGTGGTTGAAGCGGATGAAGGCAGATTATGGGTTGGAACCAGTACTTGAGCATTATACGTGTTTGGTTGGTGCAATGGGCCGAGCTGGTCAGTTGGAAGATGCTGAAAGGGCTGCAATGACAATACCTATTGCCCCAGATGCTGCAGTGTGGCGAACATTGCTGACCTGTGCAGCTTATCATAAATCACCCGACTTGGCTAGGTCCATGGCCAAACGGTTATTGGAAATTGACCCACAGGACGATTCAGCGTATGTTATTGTTGCAAATGTGTTATCATCCGCAGGAAAGTGGGACGAAGTTGCAGAAGTTAGGATGATGATGAAAGATAGGAGGGTGAAGAAGGAAGGAGGAAGGAGTTGGATCGAAGTGCGTGGAGAAGTTCATGTGTTTTTGGCTGGAGATAGAAGGCATCAAAGAATAGATGAGATATATGCAAAGGTGGCAGAATTGATGGAAGGGATTGAAAAATTAGGGTATGTGCCGTTGCCTAATGAGATGCTGCATGGGGTTGGGGAACAAGAGAAAAAGGAAGCCCTATGGTATCACAGTGAGAAGCTGGCGGTTGCATTTGGGGTGGCTATTAGTCCATGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

526

Amino Acids

57.48

Weight (kDa)

6.58

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	270 - 318	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	272 - 315	4.2e-08	PPR repeat family
E_motif	PF20431	391 - 449	6.3e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	766
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	611
AccIII	TCCGGA	2 cut(s)	410, 910
AclWI	GGATC	4 cut(s)	408, 421, 677, 1349
AcoI	YGGCCR	1 cut(s)	1188
AcsI	RAATTY	2 cut(s)	480, 541
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	2 cut(s)	56, 410
AflIII	ACRYGT	1 cut(s)	1037
AgsI	TTSAA	3 cut(s)	322, 988, 1445
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	7 cut(s)	385, 646, 877, 924, 1064, 1154, 1537
AluI	AGCT	7 cut(s)	385, 646, 877, 924, 1064, 1154, 1537
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	211, 395
AlwI	GGATC	4 cut(s)	408, 421, 677, 1349
AlwNI	CAGNNNCTG	1 cut(s)	1121
Ama87I	CYCGRG	2 cut(s)	81, 872
Aor13HI	TCCGGA	2 cut(s)	410, 910
AoxI	GGCC	6 cut(s)	216, 355, 548, 633, 1057, 1188
ApeKI	GCWGC	6 cut(s)	518, 638, 1091, 1121, 1151, 1480
ApoI	RAATTY	2 cut(s)	480, 541
AspLEI	GCGC	6 cut(s)	104, 303, 538, 562, 655, 871
AspS9I	GGNCC	5 cut(s)	217, 549, 633, 1057, 1182
AsuHPI	GGTGA	2 cut(s)	1158, 1327
AvaI	CYCGRG	2 cut(s)	81, 872
AvaII	GGWCC	1 cut(s)	1182
BalI	TGGCCA	1 cut(s)	1190
BamHI	GGATCC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	6 cut(s)	505, 650, 1078, 1108, 1163, 1467
BccI	CCATC	4 cut(s)	95, 698, 751, 1426
BceAI	ACGGC	4 cut(s)	231, 388, 488, 1447
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 454, 488
BciT130I	CCWGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	211, 395
BfaI	CTAG	1 cut(s)	1179
BfmI	CTRYAG	1 cut(s)	1122
BfoI	RGCGCY	2 cut(s)	105, 656
BfuAI	ACCTGC	1 cut(s)	766
BmcAI	AGTACT	1 cut(s)	1023
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	1182
BmeT110I	CYCGRG	2 cut(s)	81, 872
BmgT120I	GGNCC	5 cut(s)	217, 549, 633, 1057, 1182
BmiI	GGNNCC	3 cut(s)	402, 415, 1017
BmrFI	CCNGG	1 cut(s)	547
BmrI	ACTGGG	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	677, 1398
BpuEI	CTTGAG	1 cut(s)	1046
BsaAI	YACGTR	1 cut(s)	1038
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	946, 1185
BsaWI	WCCGGW	2 cut(s)	410, 910
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 272, 281, 302, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 410
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	804, 1019
Bse3DI	GCAATG	6 cut(s)	668, 829, 958, 1059, 1101, 1136
BseAI	TCCGGA	2 cut(s)	410, 910
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	946, 1185
BseGI	GGATG	8 cut(s)	227, 453, 742, 762, 919, 999, 1256, 1299
BseLI	CCNNNNNNNGG	2 cut(s)	56, 410
BseMI	GCAATG	6 cut(s)	668, 829, 958, 1059, 1101, 1136
BseNI	ACTGG	2 cut(s)	804, 1019
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	6 cut(s)	505, 650, 1078, 1108, 1163, 1467
BsgI	GTGCAG	1 cut(s)	1170
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	218, 357, 550, 635, 1059, 1190
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	2 cut(s)	81, 872
BsiSI	CCGG	4 cut(s)	57, 411, 452, 911
BslFI	GGGAC	2 cut(s)	736, 1286
BslI	CCNNNNNNNGG	2 cut(s)	56, 410
BsmAI	GTCTC	2 cut(s)	211, 395
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	736, 1286
BsnI	GGCC	6 cut(s)	218, 357, 550, 635, 1059, 1190
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	81, 872
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp13I	TCCGGA	2 cut(s)	410, 910
Bsp143I	GATC	4 cut(s)	222, 413, 669, 1341
Bsp19I	CCATGG	1 cut(s)	1185
BspANI	GGCC	6 cut(s)	218, 357, 550, 635, 1059, 1190
BspEI	TCCGGA	2 cut(s)	410, 910
BspLI	GGNNCC	3 cut(s)	402, 415, 1017
BspMAI	CTGCAG	1 cut(s)	1126
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	4 cut(s)	408, 421, 677, 1349
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	6 cut(s)	668, 829, 958, 1059, 1101, 1136
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	804, 1019
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	946, 1185
BssMI	GATC	4 cut(s)	222, 413, 669, 1341
BssNAI	GTATAC	1 cut(s)	612
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	946, 1185
Bst1107I	GTATAC	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	616, 1197, 1529
Bst6I	CTCTTC	2 cut(s)	182, 323
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	1038
BstC8I	GCNNGC	5 cut(s)	463, 534, 648, 834, 1539
BstDEI	CTNAG	1 cut(s)	928
BstDSI	CCRYGG	1 cut(s)	1185
BstF5I	GGATG	8 cut(s)	227, 453, 742, 762, 919, 999, 1256, 1299
BstH2I	RGCGCY	2 cut(s)	105, 656
BstHHI	GCGC	6 cut(s)	104, 303, 538, 562, 655, 871
BstKTI	GATC	4 cut(s)	225, 416, 672, 1344
BstMAI	GTCTC	2 cut(s)	211, 395
BstMBI	GATC	4 cut(s)	222, 413, 669, 1341
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	1122
BstV1I	GCAGC	6 cut(s)	505, 650, 1078, 1108, 1163, 1467
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BstZ17I	GTATAC	1 cut(s)	612
BsuRI	GGCC	6 cut(s)	218, 357, 550, 635, 1059, 1190
BtgI	CCRYGG	1 cut(s)	1185
BtsCI	GGATG	8 cut(s)	227, 453, 742, 762, 919, 999, 1256, 1299
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	3 cut(s)	797, 1131, 1534
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	5 cut(s)	463, 534, 648, 834, 1539
CaiI	CAGNNNCTG	1 cut(s)	1121
CfoI	GCGC	6 cut(s)	104, 303, 538, 562, 655, 871
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	5 cut(s)	217, 549, 633, 1057, 1182
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	1022
CviAII	CATG	8 cut(s)	210, 271, 580, 683, 1186, 1364, 1484, 1569
CviQI	GTAC	1 cut(s)	1022
DdeI	CTNAG	1 cut(s)	928
DpnI	GATC	4 cut(s)	224, 415, 671, 1343
DpnII	GATC	4 cut(s)	222, 413, 669, 1341
EaeI	YGGCCR	1 cut(s)	1188
Eam1104I	CTCTTC	2 cut(s)	182, 323
EarI	CTCTTC	2 cut(s)	182, 323
EciI	GGCGGA	5 cut(s)	33, 161, 245, 266, 406
Eco130I	CCWWGG	2 cut(s)	946, 1185
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	1182
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	2 cut(s)	81, 872
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	946, 1185
ErhI	CCWWGG	2 cut(s)	946, 1185
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	8 cut(s)	213, 274, 583, 686, 1189, 1367, 1487, 1572
FaqI	GGGAC	2 cut(s)	736, 1286
FatI	CATG	8 cut(s)	209, 270, 579, 682, 1185, 1363, 1483, 1568
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	611
FokI	GGATG	8 cut(s)	214, 460, 749, 769, 926, 1006, 1243, 1306
FspBI	CTAG	1 cut(s)	1179
GlaI	GCGC	6 cut(s)	103, 302, 537, 561, 654, 870
GsuI	CTGGAG	2 cut(s)	677, 1398
HaeII	RGCGCY	2 cut(s)	105, 656
HaeIII	GGCC	6 cut(s)	218, 357, 550, 635, 1059, 1190
HapII	CCGG	4 cut(s)	57, 411, 452, 911
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	6 cut(s)	104, 303, 538, 562, 655, 871
Hin1II	CATG	8 cut(s)	213, 274, 583, 686, 1189, 1367, 1487, 1572
Hin6I	GCGC	6 cut(s)	102, 301, 536, 560, 653, 869
HinP1I	GCGC	6 cut(s)	102, 301, 536, 560, 653, 869
HinfI	GANTC	2 cut(s)	863, 1223
HpaII	CCGG	4 cut(s)	57, 411, 452, 911
HphI	GGTGA	2 cut(s)	1158, 1327
Hpy166II	GTNNAC	1 cut(s)	612
Hpy188I	TCNGA	2 cut(s)	92, 400
Hpy188III	TCNNGA	2 cut(s)	411, 911
Hpy8I	GTNNAC	1 cut(s)	612
Hpy99I	CGWCG	4 cut(s)	206, 400, 479, 604
HpyCH4III	ACNGT	3 cut(s)	616, 1197, 1529
HpyCH4IV	ACGT	2 cut(s)	201, 1037
HpyF3I	CTNAG	1 cut(s)	928
HpySE526I	ACGT	2 cut(s)	201, 1037
Hsp92II	CATG	8 cut(s)	213, 274, 583, 686, 1189, 1367, 1487, 1572
HspAI	GCGC	6 cut(s)	102, 301, 536, 560, 653, 869
Kpn2I	TCCGGA	2 cut(s)	410, 910
Kzo9I	GATC	4 cut(s)	222, 413, 669, 1341
LmnI	GCTCC	5 cut(s)	116, 146, 279, 400, 658
Lsp1109I	GCAGC	6 cut(s)	505, 650, 1078, 1108, 1163, 1467
MaeI	CTAG	1 cut(s)	1179
MaeII	ACGT	2 cut(s)	201, 1037
MalI	GATC	4 cut(s)	224, 415, 671, 1343
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	4 cut(s)	222, 413, 669, 1341
MboII	GAAGA	4 cut(s)	169, 310, 1088, 1330
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	1190
MluCI	AATT	6 cut(s)	480, 541, 793, 1206, 1427, 1448
MluNI	TGGCCA	1 cut(s)	1190
MmeI	TCCRAC	6 cut(s)	261, 378, 714, 993, 1053, 1319
Mox20I	TGGCCA	1 cut(s)	1190
MroI	TCCGGA	2 cut(s)	410, 910
MscI	TGGCCA	1 cut(s)	1190
MslI	CAYNNNNRTG	2 cut(s)	269, 681
Msp20I	TGGCCA	1 cut(s)	1190
MspI	CCGG	4 cut(s)	57, 411, 452, 911
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
NcoI	CCATGG	1 cut(s)	1185
NdeII	GATC	4 cut(s)	222, 413, 669, 1341
NlaIII	CATG	8 cut(s)	213, 274, 583, 686, 1189, 1367, 1487, 1572
NlaIV	GGNNCC	3 cut(s)	402, 415, 1017
NmeAIII	GCCGAG	1 cut(s)	1085
PaeR7I	CTCGAG	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	863, 1223
Ppu21I	YACGTR	1 cut(s)	1038
PsiI	TTATAA	1 cut(s)	885
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	402, 415, 1017
PspPI	GGNCC	5 cut(s)	217, 549, 633, 1057, 1182
PspXI	VCTCGAGB	1 cut(s)	872
PstI	CTGCAG	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	1023
RsaNI	GTAC	1 cut(s)	1022
RseI	CAYNNNNRTG	2 cut(s)	269, 681
Sau3AI	GATC	4 cut(s)	222, 413, 669, 1341
Sau96I	GGNCC	5 cut(s)	217, 549, 633, 1057, 1182
ScaI	AGTACT	1 cut(s)	1023
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	1122
Sfr274I	CTCGAG	1 cut(s)	872
SinI	GGWCC	1 cut(s)	1182
SlaI	CTCGAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	2 cut(s)	269, 681
SmlI	CTYRAG	2 cut(s)	872, 1025
SmoI	CTYRAG	2 cut(s)	872, 1025
Sse9I	AATT	6 cut(s)	480, 541, 793, 1206, 1427, 1448
SspMI	CTAG	1 cut(s)	1179
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	2 cut(s)	946, 1185
TaaI	ACNGT	3 cut(s)	616, 1197, 1529
TaiI	ACGT	2 cut(s)	204, 1040
TaqI	TCGA	6 cut(s)	437, 474, 602, 783, 873, 1344
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	6 cut(s)	480, 541, 793, 1206, 1427, 1448
TatI	WGTACW	1 cut(s)	1021
TauI	GCSGC	5 cut(s)	49, 251, 638, 653, 839
TfiI	GAWTC	2 cut(s)	863, 1223
TscAI	CASTG	3 cut(s)	804, 1131, 1534
TseI	GCWGC	6 cut(s)	518, 638, 1091, 1121, 1151, 1480
TspDTI	ATGAA	6 cut(s)	253, 596, 930, 1010, 1316, 1352
TspGWI	ACGGA	1 cut(s)	989
TspRI	CASTG	3 cut(s)	804, 1131, 1534
VpaK11BI	GGWCC	1 cut(s)	1182
XapI	RAATTY	2 cut(s)	480, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1198
XhoI	CTCGAG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	1 cut(s)	1179
ZrmI	AGTACT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.