Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010817.1

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Forward (+)

56120 .. 57865

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010817.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

atggcatcaaccaccctccccaaaccgaacccactcgaacccgacccgccgccgctgccacagcccaacgccgccgaccctcttgcaatctacgcccaagccatcaaaacccacaacgccgaccgttccctccacaaccacctcatcactctctgctccaaatccaacctcacctccttctctctccgcctcttcaaccaaatcccatcacccaacgtcgtctcatggacggccctgatctcatcccactccaccacccccgccgccctccgccacttcatctccatgctccgccaccccaccttccctaaccagcgcacaatcgcctccctcttcaaaacctgcgcttctctctcgtctctctccttcggtctctccctccactcactctccctcaagctcggtatctccgccgaaccgtattcgggttcagccctcatacatttctactccaaatgtgggatgccggtttatgcccagaaggtgctcgatgaaattccccacaaggatgctgtctgctatggcgcggtgattgttgggctggcgcagaactcgaggcccattgatgcgcttttggctttcgctgacatgaaatgtagagatgttgggtcgagtatgtatactgtttcgggtgcattgagggccgcggcggagcttgctgctttggagcaatgtaggatcatacacacacatgctgttgttacggggcttgatgcgaatgtggttgtggggactgctttgttggatgcgtatgggaagtccgggattgtgtctgatgctaggcaggttttcgatgagaatttgctggtgatgagtcttgtgggatgcaatgcaatgctggcggcgtatgcgcaacagggggataagaattcagcggttgagctttttaatgcaatggaagctcgagggcttgtaccggatgaatatagcttcttagcgattctgacgtgccttggcaatgcgggtttggttttggaaacggattggtggttgaacaggatgaaggctgattacgggttggaaccagcacttgagcattatacttgtctggttggtgcaatgggccgagctggtcaattggaagatgctgaaagggctgcaatgacaatgcctattgtgcctgatgctgcagtgtggcgaacattgctaacatgtgcagcttatcataaatcacccgacttggctaggtccatggctaaacggttattggaaattgatccgcaggacgattcagcttatgttattgttgcaaatgtgttatcatccgcaggaaagtgggatgaagttgcagaagttaggaagatgatgaaagataggagggtgaagaaggaaggaggtaggagttggattgaagtgcgaggaaaagttcatgtgtttttggctggggacagaaggcatcaaagaatagatgagatatacgcaaagttggcagaattgatggaggggatagaaaaattagggtatgtgccgttgcagaatgagatgctgcatggggttggggaacaagagaaaaaggaagccctatggtatcacagtgagaagctggctatagcatttggggtggtaagtggtgctgcaccccccgggaagccattaaggattgtaaagaatttgaggatttgcagagattgtcacgaggcttttaaatatttgtgtacgttgttggagagggaaatcattgtgagggatgtaaaccgataccatatattttcaaatggtagctgtaattgtggagagatgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

581

Amino Acids

63.76

Weight (kDa)

7.02

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	852
Acc36I	ACCTGC	2 cut(s)	350, 775
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	2 cut(s)	527, 647
AclWI	GGATC	2 cut(s)	686, 1211
AcsI	RAATTY	4 cut(s)	495, 799, 868, 1609
AfaI	GTAC	2 cut(s)	915, 1657
AfiI	CCNNNNNNNGG	2 cut(s)	425, 459
AflIII	ACRYGT	1 cut(s)	1151
AgsI	TTSAA	5 cut(s)	196, 337, 994, 1352, 1713
AjiI	CACGTC	1 cut(s)	948
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	226, 363, 377
AlwI	GGATC	2 cut(s)	686, 1211
Ama87I	CYCGRG	3 cut(s)	553, 903, 1583
AoxI	GGCC	4 cut(s)	231, 557, 642, 1063
ApeKI	GCWGC	7 cut(s)	55, 659, 1097, 1127, 1157, 1486, 1574
ApoI	RAATTY	4 cut(s)	495, 799, 868, 1609
AspLEI	GCGC	6 cut(s)	318, 347, 527, 547, 571, 853
AspS9I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
AsuC2I	CCSGG	3 cut(s)	763, 1584, 1585
AsuHPI	GGTGA	6 cut(s)	163, 201, 541, 820, 1164, 1333
AvaI	CYCGRG	3 cut(s)	553, 903, 1583
AvaII	GGWCC	1 cut(s)	1188
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BauI	CACGAG	1 cut(s)	1634
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	7 cut(s)	42, 646, 1084, 1114, 1169, 1473, 1561
BccI	CCATC	3 cut(s)	110, 214, 1432
BceAI	ACGGC	2 cut(s)	246, 1453
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcnI	CCSGG	3 cut(s)	763, 1584, 1585
BcoDI	GTCTC	3 cut(s)	226, 363, 377
BfaI	CTAG	2 cut(s)	780, 1185
BfmI	CTRYAG	2 cut(s)	1128, 1548
BfuAI	ACCTGC	2 cut(s)	350, 775
Bme1390I	CCNGG	3 cut(s)	763, 1584, 1585
Bme18I	GGWCC	1 cut(s)	1188
BmeT110I	CYCGRG	3 cut(s)	553, 903, 1583
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
BmiI	GGNNCC	1 cut(s)	1023
BmrFI	CCNGG	3 cut(s)	763, 1584, 1585
BpuEI	CTTGAG	2 cut(s)	380, 1052
BpuMI	CCSGG	3 cut(s)	763, 1584, 1585
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	645, 952, 1191, 1582, 1583
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	6 cut(s)	158, 188, 266, 296, 374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 459
Bse118I	RCCGGY	1 cut(s)	466
Bse3DI	GCAATG	8 cut(s)	677, 835, 840, 900, 964, 1065, 1107, 1142
BseDI	CCNNGG	5 cut(s)	645, 952, 1191, 1582, 1583
BseLI	CCNNNNNNNGG	2 cut(s)	425, 459
BseMI	GCAATG	8 cut(s)	677, 835, 840, 900, 964, 1065, 1107, 1142
BseXI	GCAGC	7 cut(s)	42, 646, 1084, 1114, 1169, 1473, 1561
BseYI	CCCAGC	1 cut(s)	1382
BsgI	GTGCAG	2 cut(s)	1176, 1560
Bsh1236I	CGCG	2 cut(s)	527, 647
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	4 cut(s)	233, 559, 644, 1065
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	3 cut(s)	553, 903, 1583
BsiSI	CCGG	4 cut(s)	467, 762, 917, 1584
BslFI	GGGAC	2 cut(s)	745, 1400
BslI	CCNNNNNNNGG	2 cut(s)	425, 459
BsmAI	GTCTC	3 cut(s)	226, 363, 377
BsmBI	CGTCTC	2 cut(s)	226, 363
BsmFI	GGGAC	2 cut(s)	745, 1400
BsnI	GGCC	4 cut(s)	233, 559, 644, 1065
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	3 cut(s)	553, 903, 1583
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	237, 678, 1216
Bsp19I	CCATGG	1 cut(s)	1191
BspANI	GGCC	4 cut(s)	233, 559, 644, 1065
BspFNI	CGCG	2 cut(s)	527, 647
BspLI	GGNNCC	1 cut(s)	1023
BspMAI	CTGCAG	1 cut(s)	1132
BspMI	ACCTGC	2 cut(s)	350, 775
BspPI	GGATC	2 cut(s)	686, 1211
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	8 cut(s)	677, 835, 840, 900, 964, 1065, 1107, 1142
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	5 cut(s)	645, 952, 1191, 1582, 1583
BssMI	GATC	3 cut(s)	237, 678, 1216
BssNAI	GTATAC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	1634
BssT1I	CCWWGG	2 cut(s)	952, 1191
Bst1107I	GTATAC	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	1634
Bst4CI	ACNGT	5 cut(s)	125, 420, 625, 1203, 1535
Bst6I	CTCTTC	2 cut(s)	197, 338
BstC8I	GCNNGC	4 cut(s)	543, 657, 840, 1545
BstDEI	CTNAG	1 cut(s)	934
BstDSI	CCRYGG	2 cut(s)	645, 1191
BstFNI	CGCG	2 cut(s)	527, 647
BstHHI	GCGC	6 cut(s)	318, 347, 527, 547, 571, 853
BstKTI	GATC	3 cut(s)	240, 681, 1219
BstMAI	GTCTC	3 cut(s)	226, 363, 377
BstMBI	GATC	3 cut(s)	237, 678, 1216
BstMCI	CGRYCG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	695, 1155
BstSCI	CCNGG	3 cut(s)	761, 1582, 1583
BstSFI	CTRYAG	2 cut(s)	1128, 1548
BstUI	CGCG	2 cut(s)	527, 647
BstV1I	GCAGC	7 cut(s)	42, 646, 1084, 1114, 1169, 1473, 1561
BstZ17I	GTATAC	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	233, 559, 644, 1065
BtgI	CCRYGG	2 cut(s)	645, 1191
BtrI	CACGTC	1 cut(s)	948
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	2 cut(s)	1137, 1540
BveI	ACCTGC	2 cut(s)	350, 775
Cac8I	GCNNGC	4 cut(s)	543, 657, 840, 1545
CfoI	GCGC	6 cut(s)	318, 347, 527, 547, 571, 853
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
Cfr42I	CCGCGG	1 cut(s)	648
Cfr9I	CCCGGG	1 cut(s)	1583
Csp6I	GTAC	2 cut(s)	914, 1656
CviAII	CATG	8 cut(s)	225, 286, 589, 692, 1152, 1192, 1370, 1490
CviQI	GTAC	2 cut(s)	914, 1656
DdeI	CTNAG	1 cut(s)	934
DpnI	GATC	3 cut(s)	239, 680, 1218
DpnII	GATC	3 cut(s)	237, 678, 1216
DraI	TTTAAA	1 cut(s)	1645
Eam1104I	CTCTTC	2 cut(s)	197, 338
EarI	CTCTTC	2 cut(s)	197, 338
EciI	GGCGGA	5 cut(s)	176, 260, 281, 400, 665
Eco130I	CCWWGG	2 cut(s)	952, 1191
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	1188
Eco88I	CYCGRG	3 cut(s)	553, 903, 1583
EcoRI	GAATTC	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	952, 1191
ErhI	CCWWGG	2 cut(s)	952, 1191
Esp3I	CGTCTC	2 cut(s)	226, 363
FaeI	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
FaqI	GGGAC	2 cut(s)	745, 1400
FatI	CATG	8 cut(s)	224, 285, 588, 691, 1151, 1191, 1369, 1489
FauI	CCCGC	3 cut(s)	54, 268, 955
FblI	GTMKAC	1 cut(s)	620
FspBI	CTAG	2 cut(s)	780, 1185
FspI	TGCGCA	1 cut(s)	852
GlaI	GCGC	6 cut(s)	317, 346, 526, 546, 570, 852
GsaI	CCCAGC	1 cut(s)	1386
HaeIII	GGCC	4 cut(s)	233, 559, 644, 1065
HapII	CCGG	4 cut(s)	467, 762, 917, 1584
HhaI	GCGC	6 cut(s)	318, 347, 527, 547, 571, 853
Hin1II	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
Hin6I	GCGC	6 cut(s)	316, 345, 525, 545, 569, 851
HinP1I	GCGC	6 cut(s)	316, 345, 525, 545, 569, 851
HinfI	GANTC	3 cut(s)	814, 940, 1229
HpaII	CCGG	4 cut(s)	467, 762, 917, 1584
HphI	GGTGA	6 cut(s)	163, 201, 541, 820, 1164, 1333
Hpy166II	GTNNAC	3 cut(s)	621, 1656, 1693
Hpy188I	TCNGA	2 cut(s)	775, 945
Hpy188III	TCNNGA	1 cut(s)	1634
Hpy8I	GTNNAC	3 cut(s)	621, 1656, 1693
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	8 cut(s)	187, 313, 376, 475, 997, 1321, 1325, 1386
HpyCH4III	ACNGT	5 cut(s)	125, 420, 625, 1203, 1535
HpyCH4IV	ACGT	3 cut(s)	216, 947, 1658
HpyF3I	CTNAG	1 cut(s)	934
HpySE526I	ACGT	3 cut(s)	216, 947, 1658
Hsp92II	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
HspAI	GCGC	6 cut(s)	316, 345, 525, 545, 569, 851
KspI	CCGCGG	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	237, 678, 1216
LmnI	GCTCC	4 cut(s)	161, 294, 652, 667
Lsp1109I	GCAGC	7 cut(s)	42, 646, 1084, 1114, 1169, 1473, 1561
MaeI	CTAG	2 cut(s)	780, 1185
MaeII	ACGT	3 cut(s)	216, 947, 1658
MaeIII	GTNAC	2 cut(s)	700, 1631
MalI	GATC	3 cut(s)	239, 680, 1218
MboI	GATC	3 cut(s)	237, 678, 1216
MboII	GAAGA	5 cut(s)	184, 325, 1094, 1312, 1336
MfeI	CAATTG	1 cut(s)	1076
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	9 cut(s)	495, 799, 868, 1076, 1212, 1433, 1454, 1609, 1726
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	5 cut(s)	189, 723, 999, 1325, 1644
MseI	TTAA	3 cut(s)	888, 1595, 1644
MslI	CAYNNNNRTG	3 cut(s)	284, 507, 690
MspA1I	CMGCKG	3 cut(s)	55, 647, 875
MspI	CCGG	4 cut(s)	467, 762, 917, 1584
MspR9I	CCNGG	3 cut(s)	763, 1584, 1585
MunI	CAATTG	1 cut(s)	1076
MvnI	CGCG	2 cut(s)	527, 647
NciI	CCSGG	3 cut(s)	763, 1584, 1585
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	3 cut(s)	237, 678, 1216
NlaIII	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
NlaIV	GGNNCC	1 cut(s)	1023
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	1631
NsbI	TGCGCA	1 cut(s)	852
NspI	RCATGY	2 cut(s)	695, 1155
PaeR7I	CTCGAG	2 cut(s)	553, 903
PciI	ACATGT	1 cut(s)	1151
PfeI	GAWTC	2 cut(s)	940, 1229
PfoI	TCCNGGA	1 cut(s)	761
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PscI	ACATGT	1 cut(s)	1151
PspFI	CCCAGC	1 cut(s)	1382
PspN4I	GGNNCC	1 cut(s)	1023
PspPI	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
PspXI	VCTCGAGB	2 cut(s)	553, 903
PstI	CTGCAG	1 cut(s)	1132
RsaI	GTAC	2 cut(s)	915, 1657
RsaNI	GTAC	2 cut(s)	914, 1656
RseI	CAYNNNNRTG	3 cut(s)	284, 507, 690
SacII	CCGCGG	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	888, 1595, 1644
Sau3AI	GATC	3 cut(s)	237, 678, 1216
Sau96I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	3 cut(s)	763, 1584, 1585
SduI	GDGCHC	1 cut(s)	489
SfcI	CTRYAG	2 cut(s)	1128, 1548
Sfr274I	CTCGAG	2 cut(s)	553, 903
Sfr303I	CCGCGG	1 cut(s)	648
SgrBI	CCGCGG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	1188
SlaI	CTCGAG	2 cut(s)	553, 903
SmaI	CCCGGG	1 cut(s)	1585
SmiMI	CAYNNNNRTG	3 cut(s)	284, 507, 690
SmlI	CTYRAG	4 cut(s)	395, 553, 903, 1031
SmoI	CTYRAG	4 cut(s)	395, 553, 903, 1031
Sse9I	AATT	9 cut(s)	495, 799, 868, 1076, 1212, 1433, 1454, 1609, 1726
SspI	AATATT	1 cut(s)	1649
SspMI	CTAG	2 cut(s)	780, 1185
StyD4I	CCNGG	3 cut(s)	761, 1582, 1583
StyI	CCWWGG	2 cut(s)	952, 1191
TaaI	ACNGT	5 cut(s)	125, 420, 625, 1203, 1535
TaiI	ACGT	3 cut(s)	219, 950, 1661
TaqI	TCGA	6 cut(s)	36, 489, 554, 611, 792, 904
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	9 cut(s)	495, 799, 868, 1076, 1212, 1433, 1454, 1609, 1726
TauI	GCSGC	7 cut(s)	52, 55, 74, 266, 647, 650, 845
TfiI	GAWTC	2 cut(s)	940, 1229
Tru1I	TTAA	3 cut(s)	888, 1595, 1644
Tru9I	TTAA	3 cut(s)	888, 1595, 1644
TscAI	CASTG	2 cut(s)	1137, 1540
TseFI	GTSAC	1 cut(s)	1631
TseI	GCWGC	7 cut(s)	55, 659, 1097, 1127, 1157, 1486, 1574
Tsp45I	GTSAC	1 cut(s)	1631
TspDTI	ATGAA	8 cut(s)	268, 507, 605, 936, 1016, 1296, 1322, 1358
TspGWI	ACGGA	1 cut(s)	995
TspMI	CCCGGG	1 cut(s)	1583
TspRI	CASTG	2 cut(s)	1137, 1540
VpaK11BI	GGWCC	1 cut(s)	1188
XapI	RAATTY	4 cut(s)	495, 799, 868, 1609
XceI	RCATGY	2 cut(s)	695, 1155
XhoI	CTCGAG	2 cut(s)	553, 903
XmaI	CCCGGG	1 cut(s)	1583
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	2 cut(s)	780, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.