Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Reverse (-)

25640659 .. 25641717

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCATCAGTGTTAAACCCACCACCACCGCAGCCACAACCCAACTCTGCCCGATCCACCTCTATTGCTCTCCACCATTTCGTCTCCATGCTACGTCACCCTGCACTTCTCTCTCCTCTCTTTCACTCTTTCCCTTCACTCGCTTTCCCTGAAGCTTGGTATCTCGATGCAACCGTTTTCCTGGTCAGCCCTCATTCATTTCTACTCCAAATGTTGGATGGCCCTTCATGCACGCAAGGTGCTCGACAAAAATTTCCCAGAAGGATGTGGTCTGTTATGGGGAGTGTTTCGGATGTGCTGAAGGCTGCAGCCGAGCTTGCTGCTTTGGAGCAGTGTAGGATACTATATACACATGCTGTTGTGACGGGGCTTGATGTGAATTTAGTTGTAGGGACTGCTTTGGTTGATGTCTATGGGAAAGCTGGGTTTGTGTCTGATGCTAGGCAGGATGAATATAGCTTTTTTAGCAATTATGACGTGCTTTGGCAATGCGGTTTTGGTTTCCTAAAGGTGGTTAACCCGAATAAAGCAGATTACGAGTTGGAACCAACCGTTGAGCATTATACGTGTTTGGTTGGTGCCATGGGCCAGGCTGGTCAGTTGGAAGATGCTGAAAGGCCTGCAATGACAATGCCTTCTGTGCCAATGTTGCAGAAGGTGGATGAAGTTGCACAAGTGACGAAGATGATGAAAGATATATATGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

237

Amino Acids

26.01

Weight (kDa)

5.42

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	2 cut(s)	29, 492
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	251, 379
AcuI	CTGAAG	2 cut(s)	171, 320
AfiI	CCNNNNNNNGG	2 cut(s)	214, 511
AflIII	ACRYGT	1 cut(s)	566
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	180, 588
AluBI	AGCT	4 cut(s)	155, 316, 422, 459
AluI	AGCT	4 cut(s)	155, 316, 422, 459
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	3 cut(s)	220, 586, 617
ApeKI	GCWGC	4 cut(s)	31, 305, 308, 320
ApoI	RAATTY	2 cut(s)	251, 379
AspS9I	GGNCC	2 cut(s)	221, 586
AsuHPI	GGTGA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	43, 292, 307, 320
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	4 cut(s)	224, 258, 302, 336
BciT130I	CCWGG	2 cut(s)	182, 590
BciVI	GTATCC	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	4 cut(s)	32, 306, 309, 321
BlsI	GCNGC	4 cut(s)	33, 307, 310, 322
Bme1390I	CCNGG	2 cut(s)	182, 590
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	221, 586
BmiI	GGNNCC	2 cut(s)	546, 580
BmrFI	CCNGG	2 cut(s)	182, 590
BmsI	GCATC	4 cut(s)	14, 157, 427, 598
BsaAI	YACGTR	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 511
Bse3DI	GCAATG	2 cut(s)	494, 630
BseBI	CCWGG	2 cut(s)	182, 590
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	5 cut(s)	223, 270, 298, 454, 667
BseLI	CCNNNNNNNGG	2 cut(s)	214, 511
BseMI	GCAATG	2 cut(s)	494, 630
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	43, 292, 307, 320
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	222, 588, 619
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	214, 511
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	222, 588, 619
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	2 cut(s)	29, 492
BspANI	GGCC	3 cut(s)	222, 588, 619
BspLI	GGNNCC	2 cut(s)	546, 580
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	494, 630
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	182, 590
Bst4CI	ACNGT	2 cut(s)	175, 553
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	233, 318, 621
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	5 cut(s)	223, 270, 298, 454, 667
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 317, 465, 640, 649
BstNI	CCWGG	2 cut(s)	182, 590
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	180, 588
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	43, 292, 307, 320
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	222, 588, 619
BtgI	CCRYGG	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	5 cut(s)	223, 270, 298, 454, 667
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	15, 338
Cac8I	GCNNGC	3 cut(s)	233, 318, 621
Cfr13I	GGNCC	2 cut(s)	221, 586
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	4 cut(s)	88, 228, 353, 583
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	171, 320
EcoRII	CCWGG	2 cut(s)	180, 588
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	4 cut(s)	91, 231, 356, 586
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	87, 227, 352, 582
Fnu4HI	GCNGC	4 cut(s)	32, 306, 309, 321
FokI	GGATG	5 cut(s)	230, 277, 305, 461, 674
Fsp4HI	GCNGC	4 cut(s)	32, 306, 309, 321
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	4 cut(s)	32, 306, 309, 321
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	222, 588, 619
Hin1II	CATG	4 cut(s)	91, 231, 356, 586
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	517
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	2 cut(s)	292, 436
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	6 cut(s)	144, 234, 255, 295, 645, 649
HpyCH4III	ACNGT	2 cut(s)	175, 553
HpyCH4IV	ACGT	3 cut(s)	94, 477, 566
HpyCH4V	TGCA	7 cut(s)	104, 170, 231, 308, 623, 652, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 317, 465, 640, 649
HpySE526I	ACGT	3 cut(s)	94, 477, 566
Hsp92II	CATG	4 cut(s)	91, 231, 356, 586
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	43, 292, 307, 320
LweI	GCATC	4 cut(s)	14, 157, 427, 598
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	3 cut(s)	94, 477, 566
MaeIII	GTNAC	3 cut(s)	95, 361, 676
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	617, 694
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	251, 379, 469
MmeI	TCCRAC	3 cut(s)	195, 522, 582
MnlI	CCTC	4 cut(s)	70, 126, 201, 697
MseI	TTAA	2 cut(s)	14, 516
MspR9I	CCNGG	2 cut(s)	182, 590
MvaI	CCWGG	2 cut(s)	182, 590
MwoI	GCNNNNNNNGC	5 cut(s)	228, 317, 465, 640, 649
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	91, 231, 356, 586
NlaIV	GGNNCC	2 cut(s)	546, 580
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	3 cut(s)	95, 361, 676
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	33, 307, 310, 322
Ppu21I	YACGTR	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	180, 588
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	180, 588
PspN4I	GGNNCC	2 cut(s)	546, 580
PspPI	GGNCC	2 cut(s)	221, 586
PstI	CTGCAG	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	14, 516
SatI	GCNGC	4 cut(s)	32, 306, 309, 321
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	221, 586
ScrFI	CCNGG	2 cut(s)	182, 590
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	4 cut(s)	14, 157, 427, 598
SfcI	CTRYAG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	251, 379, 469
SseBI	AGGCCT	1 cut(s)	619
SsiI	CCGC	2 cut(s)	29, 492
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	180, 588
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	175, 553
TaiI	ACGT	3 cut(s)	97, 480, 569
TaqI	TCGA	2 cut(s)	165, 244
TasI	AATT	3 cut(s)	251, 379, 469
Tru1I	TTAA	2 cut(s)	14, 516
Tru9I	TTAA	2 cut(s)	14, 516
TscAI	CASTG	2 cut(s)	15, 338
TseFI	GTSAC	3 cut(s)	95, 361, 676
TseI	GCWGC	4 cut(s)	31, 305, 308, 320
Tsp45I	GTSAC	3 cut(s)	95, 361, 676
TspDTI	ATGAA	5 cut(s)	186, 216, 465, 678, 704
TspRI	CASTG	2 cut(s)	15, 338
Van91I	CCANNNNNTGG	1 cut(s)	214
XapI	RAATTY	2 cut(s)	251, 379
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.