MD13G1221400.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007498
Physical Location & Seq
Reverse (-)
21412122 .. 21412913
792 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1221400.v1.1.491

Sequence Viewer

Length: 792 bp
ATGAAGGAAGATTATGGGTTGGAACCAGCGCTTGAGCATCATACATGTTTAGTTGGTGCAATGGGACGGGCTGGGCAACTGGAAGAGGCAGAAAAGGCTGCACTGACAATGCCATTTGTGCCAGACGCTGCTGTGTGGCGATCATTGCTAGCAAGTTCAGCGTATCATAAAGCGCCTGATTTGGCTAGGTCCATGGCTAAACGGTTATTGGAAATTGACCCACATGATGATTCAGCTTATGTAATTGCTGCAAATGTGTTATCGAATGCTGGAAAATGGGATGAAGTTGCAGAAGTGAGGAAGATGATGAAAGATAGGAGGGTAACGAAGGAAGGTGGAGGAGTTGGATCGAGGTACGAGGGAAAGTTCATGTGTTTTTTGCTGGGGACAGAAGGCATGAGAGAAGGGGATGAGATTCGTGCTAAATTGGTAGAATTGATGAAGGAGATAGAGAAGTTAGGATATGTGCCATTCTGCGATGAGATGTTGCATGAAGTCGGGGAAAGGGAGAAAAAGGAATCCCTTTGGTACCACAGTGAGAAGTTGGCAGTAGCATTTGCAGTGGTGAGTGGTGCGGCACCACCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCAGGTCAATATCTGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

264

Amino Acids

22.66

Weight (kDa)

5.46

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 60 - 113 1.3e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 763
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 528, 577
AciI CCGC 1 cut(s) 575
AclWI GGATC 1 cut(s) 355
AfaI GTAC 2 cut(s) 356, 530
AfeI AGCGCT 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 98, 128, 248
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 31, 175
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 577
AsuNHI GCTAGC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 520, 553
BanI GGYRCC 2 cut(s) 528, 577
BbvI GCAGC 3 cut(s) 85, 115, 235
BciT130I CCWGG 1 cut(s) 585
BfaI CTAG 2 cut(s) 149, 186
BfoI RGCGCY 2 cut(s) 32, 176
BfuAI ACCTGC 1 cut(s) 763
BisI GCNGC 4 cut(s) 99, 129, 249, 576
BlsI GCNGC 4 cut(s) 100, 130, 250, 577
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 3 cut(s) 24, 530, 579
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 46
BmtI GCTAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 66, 143
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 286, 415
BseMI GCAATG 2 cut(s) 66, 143
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 85, 115, 235
BseYI CCCAGC 2 cut(s) 71, 382
BsgI GTGCAG 1 cut(s) 84
BshNI GGYRCC 2 cut(s) 528, 577
BslFI GGGAC 2 cut(s) 78, 400
BsmFI GGGAC 2 cut(s) 78, 400
BsmI GAATGC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 140, 347
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 575
BspLI GGNNCC 3 cut(s) 24, 530, 579
BspMI ACCTGC 1 cut(s) 763
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 2 cut(s) 528, 577
BsrDI GCAATG 2 cut(s) 66, 143
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 140, 347
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 204, 536
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 286, 415
BstH2I RGCGCY 2 cut(s) 32, 176
BstHHI GCGC 2 cut(s) 31, 175
BstKTI GATC 2 cut(s) 143, 350
BstMBI GATC 2 cut(s) 140, 347
BstMWI GCNNNNNNNGC 4 cut(s) 95, 118, 145, 158
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 583
BstV1I GCAGC 3 cut(s) 85, 115, 235
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 2 cut(s) 286, 415
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 101, 541, 567
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 2 cut(s) 31, 175
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 355, 529
CviAII CATG 6 cut(s) 45, 193, 224, 370, 397, 491
CviJI RGCY 5 cut(s) 71, 98, 185, 197, 236
CviKI_1 RGCY 5 cut(s) 71, 98, 185, 197, 236
CviQI GTAC 2 cut(s) 355, 529
DpnI GATC 2 cut(s) 142, 349
DpnII GATC 2 cut(s) 140, 347
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 48, 196, 227, 373, 400, 494
FaqI GGGAC 2 cut(s) 78, 400
FatI CATG 6 cut(s) 44, 192, 223, 369, 396, 490
Fnu4HI GCNGC 4 cut(s) 99, 129, 249, 576
FokI GGATG 2 cut(s) 293, 422
Fsp4HI GCNGC 4 cut(s) 99, 129, 249, 576
FspBI CTAG 2 cut(s) 149, 186
GlaI GCGC 2 cut(s) 30, 174
GluI GCNGC 4 cut(s) 99, 129, 249, 576
GsaI CCCAGC 2 cut(s) 75, 386
HaeII RGCGCY 2 cut(s) 32, 176
HgaI GACGC 1 cut(s) 134
HhaI GCGC 2 cut(s) 31, 175
Hin1II CATG 6 cut(s) 48, 196, 227, 373, 400, 494
Hin6I GCGC 2 cut(s) 29, 173
HinP1I GCGC 2 cut(s) 29, 173
HinfI GANTC 3 cut(s) 230, 415, 518
HphI GGTGA 1 cut(s) 577
HpyAV CCTTC 5 cut(s) 322, 326, 386, 398, 436
HpyCH4III ACNGT 2 cut(s) 204, 536
HpyCH4V TGCA 6 cut(s) 59, 101, 251, 290, 490, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 118, 145, 158
Hsp92II CATG 6 cut(s) 48, 196, 227, 373, 400, 494
HspAI GCGC 2 cut(s) 29, 173
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 140, 347
Lsp1109I GCAGC 3 cut(s) 85, 115, 235
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 149, 186
MaeIII GTNAC 1 cut(s) 322
MalI GATC 2 cut(s) 142, 349
MboI GATC 2 cut(s) 140, 347
MboII GAAGA 3 cut(s) 20, 95, 313
MluCI AATT 4 cut(s) 213, 243, 425, 434
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 6 cut(s) 79, 291, 312, 332, 345, 352
MspR9I CCNGG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 4 cut(s) 95, 118, 145, 158
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 140, 347
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 6 cut(s) 48, 196, 227, 373, 400, 494
NlaIV GGNNCC 3 cut(s) 24, 530, 579
NspI RCATGY 1 cut(s) 48
PciI ACATGT 1 cut(s) 44
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 230, 415, 518
PkrI GCNGC 4 cut(s) 100, 130, 250, 577
PscI ACATGT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 2 cut(s) 71, 382
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 24, 530, 579
PspPI GGNCC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 356, 530
RsaNI GTAC 2 cut(s) 355, 529
SatI GCNGC 4 cut(s) 99, 129, 249, 576
Sau3AI GATC 2 cut(s) 140, 347
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 585
SetI ASST 5 cut(s) 191, 238, 337, 356, 777
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 213, 243, 425, 434
SsiI CCGC 1 cut(s) 575
SspMI CTAG 2 cut(s) 149, 186
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 204, 536
TaqI TCGA 2 cut(s) 263, 350
TasI AATT 4 cut(s) 213, 243, 425, 434
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 3 cut(s) 230, 415, 518
TscAI CASTG 3 cut(s) 108, 541, 567
TseI GCWGC 3 cut(s) 98, 128, 248
TspDTI ATGAA 6 cut(s) 17, 297, 323, 358, 455, 507
TspRI CASTG 3 cut(s) 108, 541, 567
VpaK11BI GGWCC 1 cut(s) 189
XceI RCATGY 1 cut(s) 48
XspI CTAG 2 cut(s) 149, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.