Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005834.1

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Reverse (-)

36640 .. 37585

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005834.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtggtctgttatggggaggtggttgttgggttggcgcagaactcgaggctcattgatgcgtctggcttttgctgacatgaaatcttgtgatgttgggtctagcatgtatagtgtttcgggtgtgctgaaggctgcagccgagcttgctgctttggagcagtgtaggatactatatgcacatgctgttgtgacggggcttgatgtgaatttagttgtagggactgctttggttgatgtctatgggaaagctgggtttgtgtctgatgctaggcaggtttttaataagaattttctggtgctaaatcttgtggatgcggtgtcatgctggcagcatgtggatgaagttgcacaagtgaggaagatgatgaaagatatgagggttgaagaaggttccggaaggagttggattgaaatgcgggggaaacttcatgtgtttttggctgggacagaagtcatcaaagaatacatgagattatgcaaagttggcagagctgatggaggggatagaaaaactaggtcatgtgccattgcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

179

Amino Acids

19.88

Weight (kDa)

9.45

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	2 cut(s)	317, 418
AcsI	RAATTY	2 cut(s)	208, 289
AcuI	CTGAAG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	386, 413
AluBI	AGCT	3 cut(s)	145, 251, 494
AluI	AGCT	3 cut(s)	145, 251, 494
Ama87I	CYCGRG	1 cut(s)	45
Aor13HI	TCCGGA	1 cut(s)	395
ApeKI	GCWGC	4 cut(s)	134, 137, 149, 331
ApoI	RAATTY	2 cut(s)	208, 289
AspLEI	GCGC	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	121, 136, 149, 343
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciVI	GTATCC	1 cut(s)	162
BfaI	CTAG	3 cut(s)	102, 270, 516
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	4 cut(s)	135, 138, 150, 332
BlsI	GCNGC	4 cut(s)	136, 139, 151, 333
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	3 cut(s)	48, 256, 304
BoxI	GACNNNNGTC	1 cut(s)	452
BsaWI	WCCGGW	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	395
BseGI	GGATG	2 cut(s)	319, 346
BseMI	GCAATG	1 cut(s)	528
BseXI	GCAGC	4 cut(s)	121, 136, 149, 343
BseYI	CCCAGC	2 cut(s)	251, 443
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	235, 460
BsmFI	GGGAC	2 cut(s)	235, 460
BsoBI	CYCGRG	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	395
BspACI	CCGC	2 cut(s)	317, 418
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	147, 329
BstF5I	GGATG	2 cut(s)	319, 346
BstHHI	GCGC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 486
BstNSI	RCATGY	3 cut(s)	109, 185, 338
BstPAI	GACNNNNGTC	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	121, 136, 149, 343
BsuI	GTATCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	319, 346
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	147, 329
CfoI	GCGC	1 cut(s)	39
CseI	GACGC	1 cut(s)	50
CviAII	CATG	8 cut(s)	79, 106, 182, 324, 335, 431, 469, 522
CviJI	RGCY	9 cut(s)	51, 68, 134, 140, 145, 199, 251, 443, 494
CviKI_1	RGCY	9 cut(s)	51, 68, 134, 140, 145, 199, 251, 443, 494
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	45
FaeI	CATG	8 cut(s)	82, 109, 185, 327, 338, 434, 472, 525
FaqI	GGGAC	2 cut(s)	235, 460
FatI	CATG	8 cut(s)	78, 105, 181, 323, 334, 430, 468, 521
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	135, 138, 150, 332
FokI	GGATG	2 cut(s)	326, 353
Fsp4HI	GCNGC	4 cut(s)	135, 138, 150, 332
FspBI	CTAG	3 cut(s)	102, 270, 516
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	135, 138, 150, 332
GsaI	CCCAGC	2 cut(s)	255, 447
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	8 cut(s)	82, 109, 185, 327, 338, 434, 472, 525
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	396
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	396
HpyAV	CCTTC	3 cut(s)	124, 383, 393
HpyCH4V	TGCA	5 cut(s)	137, 179, 350, 480, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 486
Hsp92II	CATG	8 cut(s)	82, 109, 185, 327, 338, 434, 472, 525
HspAI	GCGC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	50, 237, 260, 281, 313, 409, 429
Lsp1109I	GCAGC	4 cut(s)	121, 136, 149, 343
LweI	GCATC	3 cut(s)	48, 256, 304
MaeI	CTAG	3 cut(s)	102, 270, 516
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	373, 398
MluCI	AATT	2 cut(s)	208, 289
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	12, 41, 351, 372, 494
MroI	TCCGGA	1 cut(s)	395
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	146, 486
NlaIII	CATG	8 cut(s)	82, 109, 185, 327, 338, 434, 472, 525
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	3 cut(s)	109, 185, 338
PaeR7I	CTCGAG	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	136, 139, 151, 333
PshAI	GACNNNNGTC	1 cut(s)	452
PspFI	CCCAGC	2 cut(s)	251, 443
PspN4I	GGNNCC	1 cut(s)	394
PspXI	VCTCGAGB	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	135, 138, 150, 332
SetI	ASST	7 cut(s)	23, 147, 253, 279, 394, 496, 521
SfaNI	GCATC	3 cut(s)	48, 256, 304
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	208, 289
SsiI	CCGC	2 cut(s)	317, 418
SspMI	CTAG	3 cut(s)	102, 270, 516
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	208, 289
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	134, 137, 149, 331
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	95, 357, 383, 419
TspRI	CASTG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	208, 289
XceI	RCATGY	3 cut(s)	109, 185, 338
XhoI	CTCGAG	1 cut(s)	45
XspI	CTAG	3 cut(s)	102, 270, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.