Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Forward (+)

55570832 .. 55572577

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGGCATCAACCACCTTCCCCAAACCGAACCCACTAGAACCCGACCCGCCGCCGCGGCCACAGCCCAACGCCGCCGACCCTCTTGCAATCTACGCCCAAGCGATCAAAACCCACAACGCCGACCGTTCCCTCCACAACCACCTCATTACTCTCTGCTCCAAATCCAACCTCACCTCCTTCTCTCTCCGCCTCTTCAACCAAATCCCATCACCCAACGTCGTCTCATGGACGGCCCTGATCTCATCCCACTCCACCACCCTCGGCGCCCTCCGCCACTTCGTCTCCATGCTCCGCCACCCCACCTTCCCCAACCAGCGCACAATCGCCACCCTCTTCAAAACCTGCGCTTCTCTCTCGTCTCTCTCCTTCGGTCTCTCCCTCCACTCACTCTCCCTCAAGCTCGGTGTCTCCGCCGAGCCGTATTCGGGTTCAGCCCTCATACACTTCTACTCCAAATGTGGGATGCCGGTTTATGCCCGGAAGGTGCTCGATGAAATTCCCCACAAGGATGCTGTCTGCTATGGCGCGGTGATTGTTGGGCTGGCGCAGAACTCGAGGCCCATTGATGCCCTTTTGGCTTTTGCTGACATGAAATGTAGAGATGTTGGGTCGAGTATGTATGCTGTTTCGGGTGCGTTGAGGGCCGCGGCGGAGCTGGCTGCTTTGGAGCAATGTAGGATCATACATACACATGCTGTTGTTACGGGGCTTGATGCGAATGTGGTTGTGGGGACTGCTTTGTTGGATGCGTATGGGAAGTCCGGGATTGTGTCTGATGCTAGACAGGTTTTCGATGAGAATTTGCTGGTGTTGAGTCTTGTGGGATGCAATGCTATGCTGGCGGCGTATGGGCAGCAGGGGGATAAGAATTCAGCGGTCGAGCTTTTTAATGCAATGGAAGCTCGAGGGCTTGTACCGGATGAATATAGCTTCTTAGCGATTTTGACGTGCCTTGGCAATGCGGGTTTGGTTTTGGAAACGGATTGGTGGTTGAACCGGATGAAAGCTGATTACGGGTTGGAACCAGCACTTGAGCATTATACTTGTCTGGTTGGTGCACTGGGCCGAGCTGGTCAGTTGGAAGATGCTGAAAGGGCTGCAATGACAATGCCTATTGTGCCTGATGCTGCAGTGTGGCGAACATTGCTAACATGTGCAGCTTATCATAAATCACCCAACTTGGCTAGGTCCATGGCTAAACGGTTATTGGAAATTGATCCGCAGGACGATTCAGCTTATGTTATTGTTGCAAATGTGTTATCATCCGCAGGAAATTGGGATGAAGTTGCAGAAGTTAGGAAGATGATGAAAGATAGGAGGGTGAAGAAGGAAGGAGGTAGGAGTTGGATTGAAGTGCGAGGAAAAGTTCATGTGTTTTTGGCTGGGGACAGAAGGCATCAAAGAATAGATGAGATATATGCAAAGTTAGCAGAATTGATGGAGGGGATAGAAAAATTAGGTTATGTGCCGTTGCAGAATGAGATGCTGCATGGGGTTGGGGAACAAGAGAAAAAGGAAGCCCTATGGTATCACAGTGAGAAGCTGGCTGTAGCATTTGGGGTGGTAAGTGGTGCTGCACCCCCCGGGAAGCCATTAAGGATTGTGAAGAATTTGAGAATTTGCAGAGATTGTCACGAGGCTTTTAAATATTTGTGTAGGTTGTTGGAGAGGGAAATCATTGTGAGGGATGTAAACCGATACCATATATTTTCAAATGGTAGCTGTAATTGTGGAGAGATGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

582

Amino Acids

63.79

Weight (kDa)

7.87

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	273 - 318	2.1e-09	PPR repeat family
E_motif	PF20431	393 - 451	4e-17	E motif
DYW_deaminase	PF14432	487 - 581	7.9e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	3 cut(s)	55, 527, 647
AclWI	GGATC	2 cut(s)	686, 1211
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	5 cut(s)	495, 799, 868, 1609, 1617
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	915
AfiI	CCNNNNNNNGG	2 cut(s)	425, 459
AflIII	ACRYGT	1 cut(s)	1151
AgsI	TTSAA	5 cut(s)	196, 337, 994, 1352, 1713
AjiI	CACGTC	1 cut(s)	948
Alw21I	GWGCWC	2 cut(s)	489, 1060
Alw26I	GTCTC	5 cut(s)	226, 286, 363, 377, 412
Alw44I	GTGCAC	1 cut(s)	1056
AlwI	GGATC	2 cut(s)	686, 1211
Ama87I	CYCGRG	3 cut(s)	553, 903, 1583
AoxI	GGCC	5 cut(s)	56, 231, 557, 642, 1063
ApaLI	GTGCAC	1 cut(s)	1056
ApeKI	GCWGC	7 cut(s)	659, 853, 1097, 1127, 1157, 1486, 1574
ApoI	RAATTY	5 cut(s)	495, 799, 868, 1609, 1617
AspLEI	GCGC	5 cut(s)	266, 318, 347, 527, 547
AspS9I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
AsuC2I	CCSGG	4 cut(s)	478, 763, 1584, 1585
AsuHPI	GGTGA	5 cut(s)	163, 201, 541, 1164, 1333
AvaI	CYCGRG	3 cut(s)	553, 903, 1583
AvaII	GGWCC	1 cut(s)	1188
BaeGI	GKGCMC	1 cut(s)	1060
BanI	GGYRCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	1634
Bbv12I	GWGCWC	2 cut(s)	489, 1060
BbvI	GCAGC	7 cut(s)	646, 865, 1084, 1114, 1169, 1473, 1561
BccI	CCATC	2 cut(s)	214, 1432
BceAI	ACGGC	3 cut(s)	246, 403, 1453
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcnI	CCSGG	4 cut(s)	478, 763, 1584, 1585
BcoDI	GTCTC	5 cut(s)	226, 286, 363, 377, 412
BfaI	CTAG	3 cut(s)	35, 780, 1185
BfmI	CTRYAG	2 cut(s)	1128, 1548
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	350
BglI	GCCNNNNNGGC	2 cut(s)	55, 575
Bme1390I	CCNGG	4 cut(s)	478, 763, 1584, 1585
Bme18I	GGWCC	1 cut(s)	1188
BmeT110I	CYCGRG	3 cut(s)	553, 903, 1583
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
BmiI	GGNNCC	2 cut(s)	265, 1023
BmrFI	CCNGG	4 cut(s)	478, 763, 1584, 1585
BmrI	ACTGGG	1 cut(s)	1070
BmuI	ACTGGG	1 cut(s)	1070
BpuEI	CTTGAG	2 cut(s)	380, 1052
BpuMI	CCSGG	4 cut(s)	478, 763, 1584, 1585
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	7 cut(s)	53, 259, 645, 952, 1191, 1582, 1583
BsaWI	WCCGGW	2 cut(s)	916, 996
BsaXI	ACNNNNNCTCC	8 cut(s)	158, 188, 266, 296, 374, 404, 434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 459
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	1065
Bse3DI	GCAATG	6 cut(s)	677, 835, 900, 964, 1107, 1142
BseDI	CCNNGG	7 cut(s)	53, 259, 645, 952, 1191, 1582, 1583
BseLI	CCNNNNNNNGG	2 cut(s)	425, 459
BseMI	GCAATG	6 cut(s)	677, 835, 900, 964, 1107, 1142
BseNI	ACTGG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	7 cut(s)	646, 865, 1084, 1114, 1169, 1473, 1561
BseYI	CCCAGC	1 cut(s)	1382
BsgI	GTGCAG	2 cut(s)	1176, 1560
Bsh1236I	CGCG	3 cut(s)	55, 527, 647
Bsh1285I	CGRYCG	2 cut(s)	124, 879
BshFI	GGCC	5 cut(s)	58, 233, 559, 644, 1065
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	2 cut(s)	124, 879
BsiHKAI	GWGCWC	2 cut(s)	489, 1060
BsiHKCI	CYCGRG	3 cut(s)	553, 903, 1583
BsiSI	CCGG	6 cut(s)	467, 478, 762, 917, 997, 1584
BslFI	GGGAC	2 cut(s)	745, 1400
BslI	CCNNNNNNNGG	2 cut(s)	425, 459
BsmAI	GTCTC	5 cut(s)	226, 286, 363, 377, 412
BsmBI	CGTCTC	3 cut(s)	226, 286, 363
BsmFI	GGGAC	2 cut(s)	745, 1400
BsnI	GGCC	5 cut(s)	58, 233, 559, 644, 1065
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	3 cut(s)	553, 903, 1583
Bsp1286I	GDGCHC	2 cut(s)	489, 1060
Bsp143I	GATC	4 cut(s)	102, 237, 678, 1216
Bsp19I	CCATGG	1 cut(s)	1191
BspANI	GGCC	5 cut(s)	58, 233, 559, 644, 1065
BspFNI	CGCG	3 cut(s)	55, 527, 647
BspLI	GGNNCC	2 cut(s)	265, 1023
BspMAI	CTGCAG	1 cut(s)	1132
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	686, 1211
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	6 cut(s)	677, 835, 900, 964, 1107, 1142
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	1065
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	7 cut(s)	53, 259, 645, 952, 1191, 1582, 1583
BssMI	GATC	4 cut(s)	102, 237, 678, 1216
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	1634
BssT1I	CCWWGG	2 cut(s)	952, 1191
Bst2BI	CACGAG	1 cut(s)	1634
Bst4CI	ACNGT	3 cut(s)	125, 1203, 1535
Bst6I	CTCTTC	2 cut(s)	197, 338
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	4 cut(s)	543, 657, 840, 1545
BstDEI	CTNAG	1 cut(s)	934
BstDSI	CCRYGG	3 cut(s)	53, 645, 1191
BstFNI	CGCG	3 cut(s)	55, 527, 647
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	5 cut(s)	266, 318, 347, 527, 547
BstKTI	GATC	4 cut(s)	105, 240, 681, 1219
BstMAI	GTCTC	5 cut(s)	226, 286, 363, 377, 412
BstMBI	GATC	4 cut(s)	102, 237, 678, 1216
BstMCI	CGRYCG	2 cut(s)	124, 879
BstNSI	RCATGY	2 cut(s)	695, 1155
BstSCI	CCNGG	4 cut(s)	476, 761, 1582, 1583
BstSFI	CTRYAG	2 cut(s)	1128, 1548
BstSLI	GKGCMC	1 cut(s)	1060
BstUI	CGCG	3 cut(s)	55, 527, 647
BstV1I	GCAGC	7 cut(s)	646, 865, 1084, 1114, 1169, 1473, 1561
BsuRI	GGCC	5 cut(s)	58, 233, 559, 644, 1065
BtgI	CCRYGG	3 cut(s)	53, 645, 1191
BtrI	CACGTC	1 cut(s)	948
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	3 cut(s)	1058, 1137, 1540
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	4 cut(s)	543, 657, 840, 1545
CfoI	GCGC	5 cut(s)	266, 318, 347, 527, 547
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
Cfr42I	CCGCGG	2 cut(s)	56, 648
Cfr9I	CCCGGG	1 cut(s)	1583
Csp6I	GTAC	1 cut(s)	914
CviAII	CATG	8 cut(s)	225, 286, 589, 692, 1152, 1192, 1370, 1490
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	1 cut(s)	934
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	4 cut(s)	104, 239, 680, 1218
DpnII	GATC	4 cut(s)	102, 237, 678, 1216
DraI	TTTAAA	1 cut(s)	1645
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	197, 338
EarI	CTCTTC	2 cut(s)	197, 338
EciI	GGCGGA	5 cut(s)	176, 260, 281, 400, 665
Eco130I	CCWWGG	2 cut(s)	952, 1191
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	1188
Eco88I	CYCGRG	3 cut(s)	553, 903, 1583
EcoRI	GAATTC	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	952, 1191
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	952, 1191
Esp3I	CGTCTC	3 cut(s)	226, 286, 363
FaeI	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
FaqI	GGGAC	2 cut(s)	745, 1400
FatI	CATG	8 cut(s)	224, 285, 588, 691, 1151, 1191, 1369, 1489
FauI	CCCGC	2 cut(s)	54, 955
FspBI	CTAG	3 cut(s)	35, 780, 1185
GlaI	GCGC	5 cut(s)	265, 317, 346, 526, 546
GsaI	CCCAGC	1 cut(s)	1386
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	5 cut(s)	58, 233, 559, 644, 1065
HapII	CCGG	6 cut(s)	467, 478, 762, 917, 997, 1584
HhaI	GCGC	5 cut(s)	266, 318, 347, 527, 547
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
Hin6I	GCGC	5 cut(s)	264, 316, 345, 525, 545
HinP1I	GCGC	5 cut(s)	264, 316, 345, 525, 545
HinfI	GANTC	2 cut(s)	814, 1229
HpaII	CCGG	6 cut(s)	467, 478, 762, 917, 997, 1584
HphI	GGTGA	5 cut(s)	163, 201, 541, 1164, 1333
Hpy166II	GTNNAC	2 cut(s)	1058, 1693
Hpy188I	TCNGA	1 cut(s)	775
Hpy188III	TCNNGA	1 cut(s)	1634
Hpy8I	GTNNAC	2 cut(s)	1058, 1693
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	8 cut(s)	25, 187, 313, 376, 475, 1321, 1325, 1386
HpyCH4III	ACNGT	3 cut(s)	125, 1203, 1535
HpyCH4IV	ACGT	2 cut(s)	216, 947
HpyF3I	CTNAG	1 cut(s)	934
HpySE526I	ACGT	2 cut(s)	216, 947
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
HspAI	GCGC	5 cut(s)	264, 316, 345, 525, 545
KasI	GGCGCC	1 cut(s)	263
KspI	CCGCGG	2 cut(s)	56, 648
Kzo9I	GATC	4 cut(s)	102, 237, 678, 1216
LmnI	GCTCC	4 cut(s)	161, 294, 652, 667
Lsp1109I	GCAGC	7 cut(s)	646, 865, 1084, 1114, 1169, 1473, 1561
MaeI	CTAG	3 cut(s)	35, 780, 1185
MaeII	ACGT	2 cut(s)	216, 947
MaeIII	GTNAC	2 cut(s)	700, 1631
MalI	GATC	4 cut(s)	104, 239, 680, 1218
MboI	GATC	4 cut(s)	102, 237, 678, 1216
MboII	GAAGA	6 cut(s)	184, 325, 1094, 1312, 1336, 1618
MhlI	GDGCHC	2 cut(s)	489, 1060
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	6 cut(s)	189, 723, 999, 1059, 1325, 1644
MseI	TTAA	3 cut(s)	888, 1595, 1644
MslI	CAYNNNNRTG	2 cut(s)	507, 690
MspA1I	CMGCKG	3 cut(s)	55, 647, 875
MspI	CCGG	6 cut(s)	467, 478, 762, 917, 997, 1584
MspR9I	CCNGG	4 cut(s)	478, 763, 1584, 1585
MvnI	CGCG	3 cut(s)	55, 527, 647
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	4 cut(s)	478, 763, 1584, 1585
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	4 cut(s)	102, 237, 678, 1216
NlaIII	CATG	8 cut(s)	228, 289, 592, 695, 1155, 1195, 1373, 1493
NlaIV	GGNNCC	2 cut(s)	265, 1023
NmeAIII	GCCGAG	3 cut(s)	240, 439, 1091
NmuCI	GTSAC	1 cut(s)	1631
NspI	RCATGY	2 cut(s)	695, 1155
PaeR7I	CTCGAG	2 cut(s)	553, 903
PciI	ACATGT	1 cut(s)	1151
PfeI	GAWTC	1 cut(s)	1229
PfoI	TCCNGGA	1 cut(s)	761
PleI	GAGTC	1 cut(s)	822
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	822
PscI	ACATGT	1 cut(s)	1151
PspFI	CCCAGC	1 cut(s)	1382
PspN4I	GGNNCC	2 cut(s)	265, 1023
PspPI	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
PspXI	VCTCGAGB	2 cut(s)	553, 903
PstI	CTGCAG	1 cut(s)	1132
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
RseI	CAYNNNNRTG	2 cut(s)	507, 690
SacII	CCGCGG	2 cut(s)	56, 648
SaqAI	TTAA	3 cut(s)	888, 1595, 1644
Sau3AI	GATC	4 cut(s)	102, 237, 678, 1216
Sau96I	GGNCC	5 cut(s)	232, 558, 642, 1063, 1188
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	4 cut(s)	478, 763, 1584, 1585
SduI	GDGCHC	2 cut(s)	489, 1060
SfcI	CTRYAG	2 cut(s)	1128, 1548
SfoI	GGCGCC	1 cut(s)	265
Sfr274I	CTCGAG	2 cut(s)	553, 903
Sfr303I	CCGCGG	2 cut(s)	56, 648
SgrBI	CCGCGG	2 cut(s)	56, 648
SinI	GGWCC	1 cut(s)	1188
SlaI	CTCGAG	2 cut(s)	553, 903
SmaI	CCCGGG	1 cut(s)	1585
SmiMI	CAYNNNNRTG	2 cut(s)	507, 690
SmlI	CTYRAG	4 cut(s)	395, 553, 903, 1031
SmoI	CTYRAG	4 cut(s)	395, 553, 903, 1031
SspDI	GGCGCC	1 cut(s)	263
SspI	AATATT	1 cut(s)	1649
SspMI	CTAG	3 cut(s)	35, 780, 1185
StyD4I	CCNGG	4 cut(s)	476, 761, 1582, 1583
StyI	CCWWGG	2 cut(s)	952, 1191
TaaI	ACNGT	3 cut(s)	125, 1203, 1535
TaiI	ACGT	2 cut(s)	219, 950
TaqI	TCGA	6 cut(s)	489, 554, 611, 792, 879, 904
TaqII	GACCGA	1 cut(s)	359
TauI	GCSGC	7 cut(s)	52, 55, 58, 74, 647, 650, 845
TfiI	GAWTC	1 cut(s)	1229
Tru1I	TTAA	3 cut(s)	888, 1595, 1644
Tru9I	TTAA	3 cut(s)	888, 1595, 1644
TscAI	CASTG	3 cut(s)	1065, 1137, 1540
TseFI	GTSAC	1 cut(s)	1631
TseI	GCWGC	7 cut(s)	659, 853, 1097, 1127, 1157, 1486, 1574
Tsp45I	GTSAC	1 cut(s)	1631
TspDTI	ATGAA	7 cut(s)	507, 605, 936, 1016, 1296, 1322, 1358
TspGWI	ACGGA	1 cut(s)	995
TspMI	CCCGGG	1 cut(s)	1583
TspRI	CASTG	3 cut(s)	1065, 1137, 1540
VneI	GTGCAC	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	1188
XapI	RAATTY	5 cut(s)	495, 799, 868, 1609, 1617
XceI	RCATGY	2 cut(s)	695, 1155
XhoI	CTCGAG	2 cut(s)	553, 903
XmaI	CCCGGG	1 cut(s)	1583
XspI	CTAG	3 cut(s)	35, 780, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.