Prupe.1G048200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3402160 .. 3405429
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G048200.1

Sequence Viewer

Length: 1725 bp
ATGAACCAAGTCTCAATACAACCACCCCGTCCTCCACCGCAACCACCCAACGCAGACCCTCGCATCCTCCACGCCCGAGCCATCACCGTCGCCAACATCGACCGTTCCCTCCGCAACAACCTCATCACTCTCTACTCCAAGTCCAATCTCCTCTCCTACTCTCTCCGCCTCTTTCACCAAATCTCTTCTCCCAATGTAGTCTCATGGACGGCCGTGATCTCGGCCCACTGCAACACCCTCTTCGCCCTCCAACACTTTGTTTCCATGCTCCGCCACCCCACTTTCCCCAACCAGCGCACCTTCGCTTCCCTCTTCAAAACCTGCGCTTCTCTTCCTTCTCTCTCCTTCGGCCTTGCCCTCCACTCCCTCTCTCTCAAGCTCGGCGTCTCGGCGCAGCCCTTTTCTGGGTCTGCCCTCATTCATTTCTACTCCAAATGTCGCTTACCCATTGAAGCCCGCAAGATGCTCGATGAAATTCCCCACAAAGACGAGGTTTGTTATGCAGCGGTGATTGTTGGGTTGGCGCAGAACTCGAGACCCGTTGAGGCGTTGTCCACTTTTGCTGACATGAAATGTTCTGATATTGGGTCTACTATGTATAGTGTTTCCGGCGCACTTCGTGCTGCAAAGGAGCTTGCTGTGTTGGAGCAATGTAGGATCATACATTCTCATGCTATAGTTACGGGACTTGATGGAAATGTTATTGTGGGGACGGCTTTGATTGATTCGTATGGGAAAGCTGGGCTTGTGTCTGATGCTAGACAGGTTTTTGATGAGAACTTGTCAAGCATGAACATTGTGGGGTGGAATGTGATGCTGGCTGGATATGCACAACTGGGGGATACGAAATTGATGCTTGAGGTTTTCAATGCAATGGAAGCTCGGGGTCTTGTGCCGGATGAATATAGTTTTTTGGCAATTTTAACGTCATTTTGCAATGCAGGTTTGGTTTCTGAGACCGATTGGTGGCTGACCCGGATGAAGGTAGATTATGGGTTGGAACCAGCTATCGAGCATTATACGTGTTTGGTTGGTGCAATGGGAAGAGCTGGTCAATTGGAAGAGGCTGAAAGGGCTGCACTGACAATGCCGTTGATACCAGACGCTGCAGTGTGGCGATCATTGCTATCAAGTTCAGCGTATCATAAAGCACCTGATTTCGCTAGGTCCATGGCTAAACGGTTATTGGAAATTGACCCACATGATGACTCTGCTTATGTAATTGCTGCAAATGTGTTATCAAACGCTGGAAGGTGGGATGAAGTTGCAGAAGTGAGGAAGATGATGAAAGATAGGAGGGTACAAAAGGAAGGTGGAAGGAGTTGGATCGAGGTACGGGGGAAAATTCATGTCTTTTTCGCCCGGGACAGAAGGCATGAAAGAATGAATGAGATCTATGCTAAATTGGTAGAGTTGATGGAGGAGATAGGAAAATTAGGATATGTGCCGGTTTGGGATGAGATATTGCATGAAGTAGGGGAATGGGAGAAAAAGGAAGCCCTTTGGTATCACAGTGAGAAGTTGGCAGTAGCATTTGCAGTGGTGAGTGGTGCGGCACCACCAGGCAAGTCAATAAGGATTGTGAAGAATTTGAGGATATGCCGGGATTGCCATGAGGCATTCAAGTATATCTGTAGAGTATTGGAGAGGGAGATCATTGTGAGAGATGTAAACAGATACCATAGATTTGTTAATGGTAGTTGTACTTGTGGAGATATATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

575

Amino Acids

64.16

Weight (kDa)

8.15

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 329, 932
AccB1I GGYRCC 1 cut(s) 1555
AccI GTMKAC 1 cut(s) 590
AciI CCGC 7 cut(s) 38, 112, 166, 271, 457, 506, 1553
AclWI GGATC 2 cut(s) 665, 1334
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 3 cut(s) 474, 1344, 1588
AcyI GRCGYC 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 3 cut(s) 1302, 1335, 1705
AfiI CCNNNNNNNGG 4 cut(s) 404, 405, 966, 982
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 4 cut(s) 316, 452, 868, 1624
AjnI CCWGG 1 cut(s) 1561
AluBI AGCT 6 cut(s) 379, 634, 740, 881, 1007, 1049
AluI AGCT 6 cut(s) 379, 634, 740, 881, 1007, 1049
Alw26I GTCTC 5 cut(s) 16, 205, 391, 529, 950
AlwI GGATC 2 cut(s) 665, 1334
AlwNI CAGNNNCTG 1 cut(s) 1106
Ama87I CYCGRG 4 cut(s) 75, 532, 882, 1362
AoxI GGCC 3 cut(s) 210, 222, 349
ApeKI GCWGC 6 cut(s) 394, 503, 623, 1076, 1106, 1226
ApoI RAATTY 3 cut(s) 474, 1344, 1588
AspLEI GCGC 5 cut(s) 297, 326, 394, 526, 614
AspS9I GGNCC 2 cut(s) 223, 1167
AsuC2I CCSGG 4 cut(s) 976, 1363, 1364, 1604
AsuHPI GGTGA 4 cut(s) 76, 167, 520, 1555
AvaI CYCGRG 4 cut(s) 75, 532, 882, 1362
AvaII GGWCC 1 cut(s) 1167
BanI GGYRCC 1 cut(s) 1555
BbvI GCAGC 6 cut(s) 406, 515, 610, 1063, 1093, 1213
BccI CCATC 3 cut(s) 89, 686, 1411
BceAI ACGGC 4 cut(s) 197, 225, 729, 1075
BcgI CGANNNNNNTGC 4 cut(s) 448, 482, 835, 869
BciT130I CCWGG 1 cut(s) 1563
BciVI GTATCC 1 cut(s) 835
BcnI CCSGG 4 cut(s) 976, 1363, 1364, 1604
BcoDI GTCTC 5 cut(s) 16, 205, 391, 529, 950
BfaI CTAG 2 cut(s) 759, 1164
BfmI CTRYAG 3 cut(s) 675, 1107, 1633
BfuAI ACCTGC 2 cut(s) 329, 932
BfuI GTATCC 1 cut(s) 835
BglII AGATCT 1 cut(s) 1392
BisI GCNGC 7 cut(s) 395, 504, 624, 1077, 1107, 1227, 1554
BlsI GCNGC 7 cut(s) 396, 505, 625, 1078, 1108, 1228, 1555
Bme1390I CCNGG 5 cut(s) 976, 1363, 1364, 1563, 1604
Bme18I GGWCC 1 cut(s) 1167
BmeT110I CYCGRG 4 cut(s) 75, 532, 882, 1362
BmgT120I GGNCC 2 cut(s) 223, 1167
BmiI GGNNCC 2 cut(s) 1002, 1557
BmrFI CCNGG 5 cut(s) 976, 1363, 1364, 1563, 1604
BmrI ACTGGG 1 cut(s) 845
BmsI GCATC 5 cut(s) 72, 453, 745, 804, 843
BmuI ACTGGG 1 cut(s) 845
BpuEI CTTGAG 2 cut(s) 359, 878
BpuMI CCSGG 4 cut(s) 976, 1363, 1364, 1604
BsaAI YACGTR 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 384
BsaI GGTCTC 2 cut(s) 529, 950
BsaJI CCNNGG 2 cut(s) 1170, 1362
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 405, 966, 982
Bse118I RCCGGY 1 cut(s) 1447
Bse1I ACTGG 1 cut(s) 840
Bse3DI GCAATG 5 cut(s) 656, 879, 943, 1044, 1121
BseBI CCWGG 1 cut(s) 1563
BseDI CCNNGG 2 cut(s) 1170, 1362
BseGI GGATG 5 cut(s) 63, 904, 984, 1264, 1462
BseLI CCNNNNNNNGG 4 cut(s) 404, 405, 966, 982
BseMI GCAATG 5 cut(s) 656, 879, 943, 1044, 1121
BseMII CTCAG 1 cut(s) 945
BseNI ACTGG 1 cut(s) 840
BseRI GAGGAG 2 cut(s) 140, 1436
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 6 cut(s) 406, 515, 610, 1063, 1093, 1213
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 1 cut(s) 1062
Bsh1285I CGRYCG 2 cut(s) 103, 213
BshFI GGCC 3 cut(s) 212, 224, 351
BshNI GGYRCC 1 cut(s) 1555
BsiEI CGRYCG 2 cut(s) 103, 213
BsiHKCI CYCGRG 4 cut(s) 75, 532, 882, 1362
BsiSI CCGG 6 cut(s) 609, 896, 976, 1363, 1448, 1603
BslFI GGGAC 3 cut(s) 699, 724, 1379
BslI CCNNNNNNNGG 4 cut(s) 404, 405, 966, 982
BsmAI GTCTC 5 cut(s) 16, 205, 391, 529, 950
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 699, 724, 1379
BsmI GAATGC 1 cut(s) 1619
BsnI GGCC 3 cut(s) 212, 224, 351
Bso31I GGTCTC 2 cut(s) 529, 950
BsoBI CYCGRG 4 cut(s) 75, 532, 882, 1362
Bsp143I GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 7 cut(s) 38, 112, 166, 271, 457, 506, 1553
BspANI GGCC 3 cut(s) 212, 224, 351
BspCNI CTCAG 1 cut(s) 946
BspLI GGNNCC 2 cut(s) 1002, 1557
BspMAI CTGCAG 1 cut(s) 1111
BspMI ACCTGC 2 cut(s) 329, 932
BspPI GGATC 2 cut(s) 665, 1334
BspQI GCTCTTC 1 cut(s) 1039
BspT107I GGYRCC 1 cut(s) 1555
BspTNI GGTCTC 2 cut(s) 529, 950
BsrDI GCAATG 5 cut(s) 656, 879, 943, 1044, 1121
BsrFI RCCGGY 1 cut(s) 1447
BsrI ACTGG 1 cut(s) 840
BssAI RCCGGY 1 cut(s) 1447
BssECI CCNNGG 2 cut(s) 1170, 1362
BssMI GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 1170
Bst2UI CCWGG 1 cut(s) 1563
Bst4CI ACNGT 4 cut(s) 88, 104, 1182, 1514
Bst6I CTCTTC 6 cut(s) 190, 245, 317, 336, 1039, 1056
BstACI GRCGYC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 1023
BstC8I GCNNGC 3 cut(s) 457, 636, 819
BstDEI CTNAG 1 cut(s) 954
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 5 cut(s) 63, 904, 984, 1264, 1462
BstHHI GCGC 5 cut(s) 297, 326, 394, 526, 614
BstKTI GATC 6 cut(s) 219, 660, 1121, 1329, 1395, 1656
BstMAI GTCTC 5 cut(s) 16, 205, 391, 529, 950
BstMBI GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
BstMCI CGRYCG 2 cut(s) 103, 213
BstMWI GCNNNNNNNGC 6 cut(s) 620, 827, 878, 1073, 1123, 1608
BstNI CCWGG 1 cut(s) 1563
BstSCI CCNGG 5 cut(s) 974, 1361, 1362, 1561, 1602
BstSFI CTRYAG 3 cut(s) 675, 1107, 1633
BstV1I GCAGC 6 cut(s) 406, 515, 610, 1063, 1093, 1213
BstX2I RGATCY 1 cut(s) 1392
BstYI RGATCY 1 cut(s) 1392
BstZI CGGCCG 1 cut(s) 210
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 3 cut(s) 212, 224, 351
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 5 cut(s) 63, 904, 984, 1264, 1462
BtsI GCAGTG 3 cut(s) 226, 1116, 1545
BtsIMutI CAGTG 5 cut(s) 226, 1079, 1116, 1519, 1545
BveI ACCTGC 2 cut(s) 329, 932
Cac8I GCNNGC 3 cut(s) 457, 636, 819
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 5 cut(s) 297, 326, 394, 526, 614
Cfr10I RCCGGY 1 cut(s) 1447
Cfr13I GGNCC 2 cut(s) 223, 1167
Cfr9I CCCGGG 1 cut(s) 1362
CseI GACGC 2 cut(s) 373, 1112
Csp6I GTAC 3 cut(s) 1301, 1334, 1704
CviQI GTAC 3 cut(s) 1301, 1334, 1704
DdeI CTNAG 1 cut(s) 954
DpnI GATC 6 cut(s) 218, 659, 1120, 1328, 1394, 1655
DpnII GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 6 cut(s) 190, 245, 317, 336, 1039, 1056
EarI CTCTTC 6 cut(s) 190, 245, 317, 336, 1039, 1056
EciI GGCGGA 2 cut(s) 155, 260
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 1170
Eco31I GGTCTC 2 cut(s) 529, 950
Eco47I GGWCC 1 cut(s) 1167
Eco52I CGGCCG 1 cut(s) 210
Eco88I CYCGRG 4 cut(s) 75, 532, 882, 1362
EcoRII CCWGG 1 cut(s) 1561
EcoT14I CCWWGG 1 cut(s) 1170
ErhI CCWWGG 1 cut(s) 1170
Esp3I CGTCTC 1 cut(s) 391
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 3 cut(s) 699, 724, 1379
FauI CCCGC 1 cut(s) 464
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 7 cut(s) 395, 504, 624, 1077, 1107, 1227, 1554
FokI GGATG 5 cut(s) 50, 911, 991, 1271, 1469
Fsp4HI GCNGC 7 cut(s) 395, 504, 624, 1077, 1107, 1227, 1554
FspBI CTAG 2 cut(s) 759, 1164
GlaI GCGC 5 cut(s) 296, 325, 393, 525, 613
GluI GCNGC 7 cut(s) 395, 504, 624, 1077, 1107, 1227, 1554
GsaI CCCAGC 1 cut(s) 744
HaeIII GGCC 3 cut(s) 212, 224, 351
HapII CCGG 6 cut(s) 609, 896, 976, 1363, 1448, 1603
HgaI GACGC 2 cut(s) 373, 1112
HhaI GCGC 5 cut(s) 297, 326, 394, 526, 614
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 5 cut(s) 295, 324, 392, 524, 612
HinP1I GCGC 5 cut(s) 295, 324, 392, 524, 612
HinfI GANTC 2 cut(s) 725, 1208
HpaII CCGG 6 cut(s) 609, 896, 976, 1363, 1448, 1603
HphI GGTGA 4 cut(s) 76, 167, 520, 1555
Hpy166II GTNNAC 3 cut(s) 555, 591, 1672
Hpy188I TCNGA 3 cut(s) 580, 754, 955
Hpy188III TCNNGA 1 cut(s) 534
Hpy8I GTNNAC 3 cut(s) 555, 591, 1672
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 8 cut(s) 310, 345, 355, 976, 1245, 1304, 1311, 1365
HpyCH4III ACNGT 4 cut(s) 88, 104, 1182, 1514
HpyCH4IV ACGT 2 cut(s) 926, 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 620, 827, 878, 1073, 1123, 1608
HpyF3I CTNAG 1 cut(s) 954
HpySE526I ACGT 2 cut(s) 926, 1022
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 5 cut(s) 295, 324, 392, 524, 612
Kzo9I GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
LguI GCTCTTC 1 cut(s) 1039
LmnI GCTCC 3 cut(s) 273, 631, 646
Lsp1109I GCAGC 6 cut(s) 406, 515, 610, 1063, 1093, 1213
LweI GCATC 5 cut(s) 72, 453, 745, 804, 843
MaeI CTAG 2 cut(s) 759, 1164
MaeII ACGT 2 cut(s) 926, 1022
MaeIII GTNAC 1 cut(s) 679
MalI GATC 6 cut(s) 218, 659, 1120, 1328, 1394, 1655
MboI GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
MboII GAAGA 8 cut(s) 177, 232, 304, 323, 1056, 1073, 1291, 1597
MfeI CAATTG 1 cut(s) 1055
MflI RGATCY 1 cut(s) 1392
MlyI GAGTC 1 cut(s) 1202
MmeI TCCRAC 4 cut(s) 274, 624, 978, 1304
MseI TTAA 2 cut(s) 923, 1692
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 6 cut(s) 609, 896, 976, 1363, 1448, 1603
MspR9I CCNGG 5 cut(s) 976, 1363, 1364, 1563, 1604
MunI CAATTG 1 cut(s) 1055
Mva1269I GAATGC 1 cut(s) 1619
MvaI CCWGG 1 cut(s) 1563
MwoI GCNNNNNNNGC 6 cut(s) 620, 827, 878, 1073, 1123, 1608
NciI CCSGG 4 cut(s) 976, 1363, 1364, 1604
NcoI CCATGG 1 cut(s) 1170
NdeII GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
NlaIV GGNNCC 2 cut(s) 1002, 1557
NmeAIII GCCGAG 3 cut(s) 200, 360, 368
PaeR7I CTCGAG 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 1619
PfeI GAWTC 1 cut(s) 725
PkrI GCNGC 7 cut(s) 396, 505, 625, 1078, 1108, 1228, 1555
PleI GAGTC 1 cut(s) 1202
PpsI GAGTC 1 cut(s) 1202
Ppu21I YACGTR 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 1561
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 1561
PspN4I GGNNCC 2 cut(s) 1002, 1557
PspPI GGNCC 2 cut(s) 223, 1167
PstI CTGCAG 1 cut(s) 1111
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 1 cut(s) 1392
RsaI GTAC 3 cut(s) 1302, 1335, 1705
RsaNI GTAC 3 cut(s) 1301, 1334, 1704
RseI CAYNNNNRTG 1 cut(s) 669
SapI GCTCTTC 1 cut(s) 1039
SaqAI TTAA 2 cut(s) 923, 1692
SatI GCNGC 7 cut(s) 395, 504, 624, 1077, 1107, 1227, 1554
Sau3AI GATC 6 cut(s) 216, 657, 1118, 1326, 1392, 1653
Sau96I GGNCC 2 cut(s) 223, 1167
SchI GAGTC 1 cut(s) 1202
ScrFI CCNGG 5 cut(s) 976, 1363, 1364, 1563, 1604
SfaNI GCATC 5 cut(s) 72, 453, 745, 804, 843
SfcI CTRYAG 3 cut(s) 675, 1107, 1633
Sfr274I CTCGAG 1 cut(s) 532
SinI GGWCC 1 cut(s) 1167
SlaI CTCGAG 1 cut(s) 532
SmaI CCCGGG 1 cut(s) 1364
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 374, 532, 857
SmoI CTYRAG 3 cut(s) 374, 532, 857
SsiI CCGC 7 cut(s) 38, 112, 166, 271, 457, 506, 1553
SspMI CTAG 2 cut(s) 759, 1164
StyD4I CCNGG 5 cut(s) 974, 1361, 1362, 1561, 1602
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 4 cut(s) 88, 104, 1182, 1514
TaiI ACGT 2 cut(s) 929, 1025
TaqI TCGA 5 cut(s) 99, 468, 533, 1011, 1329
TaqII GACCGA 1 cut(s) 974
TatI WGTACW 1 cut(s) 1703
TauI GCSGC 1 cut(s) 1556
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 2 cut(s) 923, 1692
Tru9I TTAA 2 cut(s) 923, 1692
TscAI CASTG 5 cut(s) 233, 1086, 1116, 1519, 1545
TseI GCWGC 6 cut(s) 394, 503, 623, 1076, 1106, 1226
TspMI CCCGGG 1 cut(s) 1362
TspRI CASTG 5 cut(s) 233, 1086, 1116, 1519, 1545
VpaK11BI GGWCC 1 cut(s) 1167
XapI RAATTY 3 cut(s) 474, 1344, 1588
XhoI CTCGAG 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 1362
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 2 cut(s) 759, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.