Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007498

Physical Location & Seq

Genomic Coordinates Reverse (-)

25373089 .. 25373658

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTCCACCACCCTGCACTTCTCTCTCTCTCTTTCGCTCTTTCCCTTCACTCGCTTTCCTTGAAGCTTGGTATCTCGGTGCAACCGTTTTCCGGGTCAGCCCTCATTCATTTCTACTCCAAATGTAGGATGGCCCTTCATGCACGCAATGTGCTCTACAAAATTTCCCAAAAAGACCACATCCGTTTTGGGGAGGTGATTGTTGGGTTGGCGCAGAACTCGAAGCTCATTGATGCTTTTCTGGCTTTTGCTGACATGAAATCTTGTGGTGTTGGGTCTAGCATGTATAGTGTTTCGGGTGTGCTGAGGGCTGCAGCCCAGCTTGCTGCTTTGGAGCAGTGTAGGATACTATATACACATGCTGTTGTGACGGGGCTTGATGTGAATGTAGTTGTAGGGACTGCTTTGGTTGATGTCTATGGGAAAGCTGGGTTTGTGTCTGATGCTAGGCAGGTTTTTAATAAGAATTTTCTGGTGCTAAATCTTGTGGATGCAGTGTCATGCTGGCAGCATATGCACAACAAAGGGATAAGGATTCAGCATTCGAGCTTTTGTACAGGATCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

189

Amino Acids

20.52

Weight (kDa)

9.35

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007498)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04611
malus_domestica	MD13G1221300.v1.1 MD13G1221400.v1.1 MD13G1221500.v1.1
prunus_persica	Prupe.1G048200_v2.0.a1
pyrus_communis	pycom13g19580
rosa_chinensis	RchiOBHm_Chr4g0395381
rosa_laevigata	RLG00000002110 RLG00000009627
rosa_multiflora	Rmu_sc0002791.1_g000013 Rmu_sc0005834.1_g000011 Rmu_sc0010817.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237650 Rroxscaffold_5G00340340
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4BG057900 Rh4CG063400 Rh4DG054500 Rh4DG085800 Rh7AG345000 Rh7CG362400 Rh7DG342600
rosa_wichuraiana	Rw0G003280 Rw0G007680 Rw4G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AclWI	GGATC	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	162, 466
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	3 cut(s)	92, 126, 190
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	5 cut(s)	67, 226, 322, 428, 549
AluI	AGCT	5 cut(s)	67, 226, 322, 428, 549
Alw21I	GWGCWC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	568
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	311, 314, 326, 508
ApoI	RAATTY	2 cut(s)	162, 466
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	298, 313, 326, 520
BccI	CCATC	1 cut(s)	124
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	2 cut(s)	279, 447
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	312, 315, 327, 509
BlsI	GCNGC	4 cut(s)	313, 316, 328, 510
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	3 cut(s)	223, 433, 481
Bpu10I	CCTNAGC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 126, 190
Bse3DI	GCAATG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	135, 180, 496
BseLI	CCNNNNNNNGG	3 cut(s)	92, 126, 190
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	298, 313, 326, 520
BseYI	CCCAGC	2 cut(s)	318, 428
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	92, 126, 190
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	1 cut(s)	560
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	554
BssMI	GATC	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	145, 324, 506
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	135, 180, 496
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	563
BstMBI	GATC	1 cut(s)	560
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 242, 323, 514
BstNSI	RCATGY	2 cut(s)	286, 362
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	298, 313, 326, 520
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	135, 180, 496
BtsI	GCAGTG	2 cut(s)	344, 501
BtsIMutI	CAGTG	2 cut(s)	344, 501
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	3 cut(s)	145, 324, 506
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	5 cut(s)	140, 256, 283, 359, 501
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
FaeI	CATG	5 cut(s)	143, 259, 286, 362, 504
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	5 cut(s)	139, 255, 282, 358, 500
FauNDI	CATATG	1 cut(s)	513
Fnu4HI	GCNGC	4 cut(s)	312, 315, 327, 509
FokI	GGATG	3 cut(s)	142, 167, 503
Fsp4HI	GCNGC	4 cut(s)	312, 315, 327, 509
FspBI	CTAG	2 cut(s)	279, 447
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	312, 315, 327, 509
GsaI	CCCAGC	2 cut(s)	322, 432
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	143, 259, 286, 362, 504
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	56, 146
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	6 cut(s)	17, 82, 143, 314, 494, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 242, 323, 514
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	143, 259, 286, 362, 504
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	560
LmnI	GCTCC	2 cut(s)	9, 334
LpnPI	CCDG	9 cut(s)	27, 106, 227, 332, 414, 437, 458, 490, 543
Lsp1109I	GCAGC	4 cut(s)	298, 313, 326, 520
LweI	GCATC	3 cut(s)	223, 433, 481
MaeI	CTAG	2 cut(s)	279, 447
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	1 cut(s)	562
MboI	GATC	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	162, 466
MnlI	CCTC	3 cut(s)	113, 187, 300
MseI	TTAA	1 cut(s)	459
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	140, 242, 323, 514
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	1 cut(s)	560
NlaIII	CATG	5 cut(s)	143, 259, 286, 362, 504
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	2 cut(s)	286, 362
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	313, 316, 328, 510
PspFI	CCCAGC	2 cut(s)	318, 428
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	4 cut(s)	312, 315, 327, 509
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	69, 198, 228, 324, 430, 456, 551
SfaNI	GCATC	3 cut(s)	223, 433, 481
SfcI	CTRYAG	1 cut(s)	312
Sse9I	AATT	2 cut(s)	162, 466
SspMI	CTAG	2 cut(s)	279, 447
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	221, 545
TasI	AATT	2 cut(s)	162, 466
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	344, 501
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	311, 314, 326, 508
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	98, 128, 272
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	344, 501
XapI	RAATTY	2 cut(s)	162, 466
XceI	RCATGY	2 cut(s)	286, 362
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 185
XspI	CTAG	2 cut(s)	279, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.