Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

4572776 .. 4578371

Gene Structure 5596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTCTTCTCTCATTGCCAATCTCTCTCTTTCATTCTCCATAGTCTCCTCATCATCTTCATCTTCCGCTAAAGGTAATAAACCCAATAACTCAAACTCAAAGAAACTCAAGCTCAGAGAGGACTGGAGACAACGCTCCAAACCCATCCCTCCAGGTGGCACTTACCCAGCTAAAGACCACTGCAGTCGTTGCGGTTTGTGTGATACTTACTACATTGCCCATGTTAAGGAAGCCTGTGCTTTTTTGGGAGATGGGATGTCCAAGATTGAAGAATTGGAACCTGTAGTTCATGGTAGAGGGAGAAAGCCGGATTCTTTAGATGAAATGCACTTGGGTGTCTATGAGGAGCTGTTGTATGCTCGGAAGACCAAGCCTGTTGAAGGTGCTCAGTGGACGGGGATAGTAACAACCATTGCCATAGAAATGCTAAAATCAGGCATGGTAGAAGCTGTTATTTGTGTACAGAGTGACCCAGAGGACAGATTTTCACCAATGCCTGTATTAGCAAGGACACCTGAAGAAGTTCTAGCTGCTAAAGGTGTCAAGCCAACATTATCACCTAATCTGAATACCCTTGCCCTAGTTGAGGCTGCAGGTGTAAAGAAACTTCTATTCTGTGGTGTGGGTTGCCAGGTGCAAGCATTGAGGTCTGTGGAGCACCATCTCAATTTGGAGAAGCTGTATGTGTTAGGCACAAATTGTGTGGATAATGGGAGTCGTGAAGGGCTTGATAAGTTTTTAAAGGCTGCTAGTAGTGAACCAGAGACGGTTCTTCATTACGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATTGAAGAGGTTCCTTATTTCTCTCTGCCAGCGAATGATTTAGTTGATGTAATTGCTCCTTCTTGTTATAGCTGCTTTGACTACACAAATGGTTTGGCGGATTTAGTGGTTGGATACATGGGTGTGCCGAAATATTCTGGAATCAGCATGACACAACATCCTCAGTATGTTACGGTAAGAAATGAACGTGGAAGAGAGATGCTTAGTCTGGTTGAAAAACTTCTGGAAGTTACTCCTACGACTAGTAGTGGTGATCGCCGACCATTTGTATTGGAGACAGTTAAGGCAGATGATACTGCTAAGATGGGTAGGGGTCCTGATCCTGCACCAAAGTTCATTGGCAACGTGATTGCTTTCTTGCTAAATTTGGTTGGTCCCAAGGGGCTGGAATTTGCTCGTTATTCACTTGATTACCATACCATCAGGAACTATCTGCATATTAACCGAACATGGGGAAAAGAAAGAGCTGATCGACATATACCTTCGTTTGCAAAGAAAATTGTGGATATGTACAACAAGAATGGTGAGATTGATAAGATGCTTTCCGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

461

Amino Acids

50.95

Weight (kDa)

7.59

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FrhB_FdhB_N	PF04422	118 - 192	1.4e-25	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
FrhB_FdhB_C	PF04432	201 - 355	1.1e-26	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	584
AciI	CCGC	4 cut(s)	66, 192, 926, 1374
AclWI	GGATC	1 cut(s)	1142
AcsI	RAATTY	2 cut(s)	1192, 1217
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	462, 1340
AfiI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
AgsI	TTSAA	5 cut(s)	269, 380, 811, 833, 1043
AhlI	ACTAGT	1 cut(s)	1070
AjnI	CCWGG	2 cut(s)	151, 630
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	8 cut(s)	112, 170, 349, 449, 530, 679, 900, 1295
AluI	AGCT	8 cut(s)	112, 170, 349, 449, 530, 679, 900, 1295
Alw21I	GWGCWC	2 cut(s)	388, 660
Alw26I	GTCTC	4 cut(s)	49, 121, 758, 1097
AlwI	GGATC	1 cut(s)	1142
ApeKI	GCWGC	4 cut(s)	530, 590, 746, 900
ApoI	RAATTY	2 cut(s)	1192, 1217
Asp700I	GAANNNNTTC	3 cut(s)	522, 837, 1047
AspS9I	GGNCC	2 cut(s)	1142, 1202
AsuHPI	GGTGA	4 cut(s)	480, 549, 1091, 1364
AvaII	GGWCC	2 cut(s)	1142, 1202
BaeI	ACNNNNGTAYC	2 cut(s)	934, 967
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	388, 660
BbvI	GCAGC	4 cut(s)	517, 577, 733, 887
BccI	CCATC	6 cut(s)	152, 245, 669, 815, 1126, 1256
BciT130I	CCWGG	2 cut(s)	153, 632
BciVI	GTATCC	1 cut(s)	935
BcoDI	GTCTC	4 cut(s)	49, 121, 758, 1097
BcuI	ACTAGT	1 cut(s)	1070
BfaI	CTAG	4 cut(s)	527, 581, 750, 1071
BfmI	CTRYAG	3 cut(s)	181, 282, 591
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	4 cut(s)	531, 591, 747, 901
BlsI	GCNGC	4 cut(s)	532, 592, 748, 902
Bme1390I	CCNGG	2 cut(s)	153, 632
Bme18I	GGWCC	2 cut(s)	1142, 1202
BmgT120I	GGNCC	2 cut(s)	1142, 1202
BmiI	GGNNCC	4 cut(s)	279, 840, 1143, 1204
BmrFI	CCNGG	2 cut(s)	153, 632
BmsI	GCATC	2 cut(s)	1017, 1356
BpiI	GAAGAC	1 cut(s)	371
BpmI	CTGGAG	2 cut(s)	135, 145
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	1206
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 665, 695
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	3 cut(s)	12, 213, 411
BseBI	CCWGG	2 cut(s)	153, 632
BseDI	CCNNGG	1 cut(s)	1206
BseGI	GGATG	4 cut(s)	144, 261, 826, 985
BseLI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
BseMI	GCAATG	3 cut(s)	12, 213, 411
BseMII	CTCAG	3 cut(s)	127, 401, 1004
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	37, 359
BseXI	GCAGC	4 cut(s)	517, 577, 733, 887
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	1137
BsiHKAI	GWGCWC	2 cut(s)	388, 660
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	1188
BslI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
BsmAI	GTCTC	4 cut(s)	49, 121, 758, 1097
BsmBI	CGTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	1188
Bsp1286I	GDGCHC	2 cut(s)	388, 660
Bsp1407I	TGTACA	2 cut(s)	460, 1338
Bsp143I	GATC	3 cut(s)	1081, 1147, 1297
BspACI	CCGC	4 cut(s)	66, 192, 926, 1374
BspCNI	CTCAG	3 cut(s)	126, 400, 1003
BspLI	GGNNCC	4 cut(s)	279, 840, 1143, 1204
BspMAI	CTGCAG	2 cut(s)	185, 595
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	1142
BsrDI	GCAATG	3 cut(s)	12, 213, 411
BsrGI	TGTACA	2 cut(s)	460, 1338
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	1206
BssMI	GATC	3 cut(s)	1081, 1147, 1297
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	2 cut(s)	153, 632
Bst4CI	ACNGT	3 cut(s)	769, 1003, 1108
Bst6I	CTCTTC	2 cut(s)	828, 1015
BstAPI	GCANNNNNTGC	1 cut(s)	189
BstAUI	TGTACA	2 cut(s)	460, 1338
BstC8I	GCNNGC	2 cut(s)	639, 858
BstDEI	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
BstENI	CCTNNNNNAGG	2 cut(s)	378, 584
BstF5I	GGATG	4 cut(s)	144, 261, 826, 985
BstKTI	GATC	3 cut(s)	1084, 1150, 1300
BstMAI	GTCTC	4 cut(s)	49, 121, 758, 1097
BstMBI	GATC	3 cut(s)	1081, 1147, 1297
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	2 cut(s)	153, 632
BstSCI	CCNGG	2 cut(s)	151, 630
BstSFI	CTRYAG	3 cut(s)	181, 282, 591
BstV1I	GCAGC	4 cut(s)	517, 577, 733, 887
BstV2I	GAAGAC	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	1213
BsuI	GTATCC	1 cut(s)	935
BtsCI	GGATG	4 cut(s)	144, 261, 826, 985
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	178, 395
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	639, 858
Cfr13I	GGNCC	2 cut(s)	1142, 1202
Csp6I	GTAC	2 cut(s)	461, 1339
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	6 cut(s)	221, 290, 439, 946, 976, 1278
CviQI	GTAC	2 cut(s)	461, 1339
DdeI	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
DpnI	GATC	3 cut(s)	1083, 1149, 1299
DpnII	GATC	3 cut(s)	1081, 1147, 1297
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	828, 1015
EarI	CTCTTC	2 cut(s)	828, 1015
EciI	GGCGGA	2 cut(s)	941, 1363
Eco130I	CCWWGG	1 cut(s)	1206
Eco47I	GGWCC	2 cut(s)	1142, 1202
Eco57I	CTGAAG	1 cut(s)	537
EcoNI	CCTNNNNNAGG	2 cut(s)	378, 584
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoRII	CCWGG	2 cut(s)	151, 630
EcoT14I	CCWWGG	1 cut(s)	1206
ErhI	CCWWGG	1 cut(s)	1206
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	1188
FatI	CATG	6 cut(s)	220, 289, 438, 945, 975, 1277
Fnu4HI	GCNGC	4 cut(s)	531, 591, 747, 901
FokI	GGATG	4 cut(s)	131, 268, 833, 972
Fsp4HI	GCNGC	4 cut(s)	531, 591, 747, 901
FspBI	CTAG	4 cut(s)	527, 581, 750, 1071
GluI	GCNGC	4 cut(s)	531, 591, 747, 901
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	135, 145
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
HinfI	GANTC	3 cut(s)	311, 715, 969
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	4 cut(s)	480, 549, 1091, 1364
Hpy166II	GTNNAC	4 cut(s)	393, 461, 758, 805
Hpy188I	TCNGA	3 cut(s)	116, 363, 567
Hpy188III	TCNNGA	5 cut(s)	719, 966, 1052, 1145, 1252
Hpy8I	GTNNAC	4 cut(s)	393, 461, 758, 805
HpyAV	CCTTC	4 cut(s)	374, 716, 897, 1320
HpyCH4III	ACNGT	3 cut(s)	769, 1003, 1108
HpyCH4IV	ACGT	2 cut(s)	1015, 1173
HpyCH4V	TGCA	8 cut(s)	183, 328, 593, 637, 790, 1154, 1264, 1319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
HpySE526I	ACGT	2 cut(s)	1015, 1173
Hsp92II	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
Kzo9I	GATC	3 cut(s)	1081, 1147, 1297
LmnI	GCTCC	4 cut(s)	140, 346, 655, 889
Lsp1109I	GCAGC	4 cut(s)	517, 577, 733, 887
LweI	GCATC	2 cut(s)	1017, 1356
MaeI	CTAG	4 cut(s)	527, 581, 750, 1071
MaeII	ACGT	2 cut(s)	1015, 1173
MaeIII	GTNAC	4 cut(s)	403, 467, 997, 1057
MalI	GATC	3 cut(s)	1083, 1149, 1299
MboI	GATC	3 cut(s)	1081, 1147, 1297
MboII	GAAGA	8 cut(s)	48, 54, 281, 376, 530, 764, 845, 1032
MhlI	GDGCHC	2 cut(s)	388, 660
MluCI	AATT	7 cut(s)	272, 667, 697, 879, 1192, 1217, 1326
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	919
MroXI	GAANNNNTTC	3 cut(s)	522, 837, 1047
MseI	TTAA	4 cut(s)	225, 740, 1110, 1269
MslI	CAYNNNNRTG	4 cut(s)	333, 422, 819, 950
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	153, 632
MvaI	CCWGG	2 cut(s)	153, 632
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	3 cut(s)	1081, 1147, 1297
NlaIII	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
NlaIV	GGNNCC	4 cut(s)	279, 840, 1143, 1204
NmuCI	GTSAC	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	584
PdmI	GAANNNNTTC	3 cut(s)	522, 837, 1047
PfeI	GAWTC	2 cut(s)	311, 969
PkrI	GCNGC	4 cut(s)	532, 592, 748, 902
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
PpuMI	RGGWCCY	1 cut(s)	1142
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	2 cut(s)	151, 630
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	151, 630
PspN4I	GGNNCC	4 cut(s)	279, 840, 1143, 1204
PspPI	GGNCC	2 cut(s)	1142, 1202
PspPPI	RGGWCCY	1 cut(s)	1142
PstI	CTGCAG	2 cut(s)	185, 595
RsaI	GTAC	2 cut(s)	462, 1340
RsaNI	GTAC	2 cut(s)	461, 1339
RseI	CAYNNNNRTG	4 cut(s)	333, 422, 819, 950
SaqAI	TTAA	4 cut(s)	225, 740, 1110, 1269
SatI	GCNGC	4 cut(s)	531, 591, 747, 901
Sau3AI	GATC	3 cut(s)	1081, 1147, 1297
Sau96I	GGNCC	2 cut(s)	1142, 1202
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	2 cut(s)	153, 632
SduI	GDGCHC	2 cut(s)	388, 660
SfaNI	GCATC	2 cut(s)	1017, 1356
SfcI	CTRYAG	3 cut(s)	181, 282, 591
SinI	GGWCC	2 cut(s)	1142, 1202
SmiMI	CAYNNNNRTG	4 cut(s)	333, 422, 819, 950
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	1070
Sse9I	AATT	7 cut(s)	272, 667, 697, 879, 1192, 1217, 1326
SsiI	CCGC	4 cut(s)	66, 192, 926, 1374
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	4 cut(s)	527, 581, 750, 1071
StyD4I	CCNGG	2 cut(s)	151, 630
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	3 cut(s)	769, 1003, 1108
TaiI	ACGT	2 cut(s)	1018, 1176
TaqI	TCGA	1 cut(s)	1300
TasI	AATT	7 cut(s)	272, 667, 697, 879, 1192, 1217, 1326
TatI	WGTACW	2 cut(s)	460, 1338
TfiI	GAWTC	2 cut(s)	311, 969
Tru1I	TTAA	4 cut(s)	225, 740, 1110, 1269
Tru9I	TTAA	4 cut(s)	225, 740, 1110, 1269
TscAI	CASTG	2 cut(s)	185, 395
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	4 cut(s)	530, 590, 746, 900
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	7 cut(s)	21, 48, 278, 336, 764, 1026, 1153
TspRI	CASTG	2 cut(s)	185, 395
VpaK11BI	GGWCC	2 cut(s)	1142, 1202
XagI	CCTNNNNNAGG	2 cut(s)	378, 584
XapI	RAATTY	2 cut(s)	1192, 1217
XmnI	GAANNNNTTC	3 cut(s)	522, 837, 1047
XspI	CTAG	4 cut(s)	527, 581, 750, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.