Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002578.1

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Forward (+)

41139 .. 46220

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002578.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgtcttctctttcttcaattcctctcccactctccatcgtttcctcttcatcttcatcttcatctaaaggaacaggaggtaaacccaactcaaagtcactgaagcttagagaggactggagacaacgctccaaacccattccccctggtggcacttacccagctaaagaccattgcagtcgttgcgggttgtgtgacacctattacattgcccatgtcaagcaagcctgtgcttttttgggagatgggatgtccaagattgaaggtttggaacctgtagttcatggtagagggagaaagccagattctttagatgaaatgcacttgggtgctcagtggacggggatagtaacaactattgcaatagaaatgctaaaatcaggcatggtagaagctgtcatatgtgttcagagtgacccagaggacagattttctccaaggcctgtattagcaaggacaccggaagaagttctagctgctaaaggtgtcaagccgacattatcacctaatcttaatacccttgccctagttgaggctgcaggtgtaaagaaacttctattctgtggtgtgggttgccaggtgcaagcattaaggtctgtggagcatcatctgaatttggagaagctgtatgtgttgggcacaaattgcgtggataatgggactcgtgaagggcttgataagtttctaaaggctgctagtagtgaaccagagacggtccttcattatgagtttatgcaagattacaaggttcacttgaagcatttggatggtcatattgaagaggttccttatttctccctgccagcaaatgatttagttgatgtaattgctccttcttgttatagctgctttgactacacaaatgctttggcggatttagtggttggatacatgggtgtgccaaaatattctggaatcagcatgacacaacatcctcagtatgttacggtaagaaatgaacgtggaagagagatgctcagtctggttgaaaaacatttggagattactccaacaactagtagtggtgatcgcagaccgtttgtattggagacggttaaggcggatgatactgctaagatggggaggggtcctgatcctgcaccaaagttcgttggcaatttgattgctttcttgctaaacttggttggtcccaaggggctggagtttgctcgatattcacttgattaccataccatccggaactatctgcatattaaccgaacatggggaaaagaaagagctggtcgacatatgccttcgtatgcaaagaaaattgtggatagttacaacaagaatggtgaaattgataagatgctttcggccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

442

Amino Acids

48.65

Weight (kDa)

8.39

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	1246
AccIII	TCCGGA	1 cut(s)	1197
AciI	CCGC	3 cut(s)	186, 872, 1061
AclWI	GGATC	1 cut(s)	1088
AcoI	YGGCCR	1 cut(s)	1320
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	149, 532, 1225
AgsI	TTSAA	5 cut(s)	18, 263, 757, 779, 989
AhlI	ACTAGT	1 cut(s)	1016
AjnI	CCWGG	2 cut(s)	145, 576
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	7 cut(s)	106, 164, 395, 476, 625, 846, 1241
AluI	AGCT	7 cut(s)	106, 164, 395, 476, 625, 846, 1241
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	115, 704, 1043
AlwI	GGATC	1 cut(s)	1088
Aor13HI	TCCGGA	1 cut(s)	1197
AoxI	GGCC	2 cut(s)	440, 1320
ApeKI	GCWGC	4 cut(s)	476, 536, 692, 846
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	2 cut(s)	468, 783
AspS9I	GGNCC	3 cut(s)	715, 1088, 1148
AsuHPI	GGTGA	3 cut(s)	495, 1037, 1310
AvaII	GGWCC	3 cut(s)	715, 1088, 1148
BaeGI	GKGCMC	1 cut(s)	641
BaeI	ACNNNNGTAYC	2 cut(s)	880, 913
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	4 cut(s)	463, 523, 679, 833
BccI	CCATC	5 cut(s)	44, 239, 761, 1072, 1202
BciT130I	CCWGG	2 cut(s)	147, 578
BciVI	GTATCC	1 cut(s)	881
BcoDI	GTCTC	3 cut(s)	115, 704, 1043
BcuI	ACTAGT	1 cut(s)	1016
BfaI	CTAG	4 cut(s)	473, 527, 696, 1017
BfmI	CTRYAG	2 cut(s)	276, 537
BfuAI	ACCTGC	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	4 cut(s)	477, 537, 693, 847
BlsI	GCNGC	4 cut(s)	478, 538, 694, 848
Bme1390I	CCNGG	2 cut(s)	147, 578
Bme18I	GGWCC	3 cut(s)	715, 1088, 1148
BmgT120I	GGNCC	3 cut(s)	715, 1088, 1148
BmiI	GGNNCC	4 cut(s)	273, 786, 1089, 1150
BmrFI	CCNGG	2 cut(s)	147, 578
BmsI	GCATC	3 cut(s)	613, 963, 1302
BplI	GAGNNNNNCTC	2 cut(s)	960, 992
BpmI	CTGGAG	2 cut(s)	139, 1181
BsaJI	CCNNGG	3 cut(s)	145, 437, 1152
BsaWI	WCCGGW	2 cut(s)	460, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 532, 1225
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	2 cut(s)	172, 207
BseAI	TCCGGA	1 cut(s)	1197
BseBI	CCWGG	2 cut(s)	147, 578
BseDI	CCNNGG	3 cut(s)	145, 437, 1152
BseGI	GGATG	5 cut(s)	255, 772, 931, 1069, 1194
BseLI	CCNNNNNNNGG	3 cut(s)	149, 532, 1225
BseMI	GCAATG	2 cut(s)	172, 207
BseMII	CTCAG	3 cut(s)	347, 950, 991
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	463, 523, 679, 833
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	1083
BshFI	GGCC	2 cut(s)	442, 1322
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	461, 1198
BslFI	GGGAC	2 cut(s)	673, 1134
BslI	CCNNNNNNNGG	3 cut(s)	149, 532, 1225
BsmAI	GTCTC	3 cut(s)	115, 704, 1043
BsmBI	CGTCTC	2 cut(s)	704, 1043
BsmFI	GGGAC	2 cut(s)	673, 1134
BsnI	GGCC	2 cut(s)	442, 1322
Bsp1286I	GDGCHC	2 cut(s)	334, 641
Bsp13I	TCCGGA	1 cut(s)	1197
Bsp143I	GATC	2 cut(s)	1027, 1093
BspACI	CCGC	3 cut(s)	186, 872, 1061
BspANI	GGCC	2 cut(s)	442, 1322
BspCNI	CTCAG	3 cut(s)	346, 949, 990
BspEI	TCCGGA	1 cut(s)	1197
BspLI	GGNNCC	4 cut(s)	273, 786, 1089, 1150
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	1088
BsrDI	GCAATG	2 cut(s)	172, 207
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	145, 437, 1152
BssMI	GATC	2 cut(s)	1027, 1093
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	437, 1152
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	147, 578
Bst4CI	ACNGT	4 cut(s)	715, 949, 1038, 1054
Bst6I	CTCTTC	3 cut(s)	52, 774, 961
BstAPI	GCANNNNNTGC	2 cut(s)	183, 645
BstC8I	GCNNGC	3 cut(s)	225, 585, 804
BstDEI	CTNAG	5 cut(s)	107, 333, 936, 977, 1074
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	5 cut(s)	255, 772, 931, 1069, 1194
BstKTI	GATC	2 cut(s)	1030, 1096
BstMAI	GTCTC	3 cut(s)	115, 704, 1043
BstMBI	GATC	2 cut(s)	1027, 1093
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 645
BstNI	CCWGG	2 cut(s)	147, 578
BstSCI	CCNGG	2 cut(s)	145, 576
BstSFI	CTRYAG	2 cut(s)	276, 537
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	4 cut(s)	463, 523, 679, 833
BstXI	CCANNNNNNTGG	1 cut(s)	1159
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	442, 1322
BtsCI	GGATG	5 cut(s)	255, 772, 931, 1069, 1194
BtsIMutI	CAGTG	2 cut(s)	98, 341
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	225, 585, 804
Cfr13I	GGNCC	3 cut(s)	715, 1088, 1148
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	6 cut(s)	215, 284, 385, 892, 922, 1224
DdeI	CTNAG	5 cut(s)	107, 333, 936, 977, 1074
DpnI	GATC	2 cut(s)	1029, 1095
DpnII	GATC	2 cut(s)	1027, 1093
EaeI	YGGCCR	1 cut(s)	1320
Eam1104I	CTCTTC	3 cut(s)	52, 774, 961
EarI	CTCTTC	3 cut(s)	52, 774, 961
EciI	GGCGGA	2 cut(s)	887, 1076
Eco130I	CCWWGG	2 cut(s)	437, 1152
Eco147I	AGGCCT	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	715, 1088, 1148
Eco57I	CTGAAG	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoRII	CCWGG	2 cut(s)	145, 576
EcoT14I	CCWWGG	2 cut(s)	437, 1152
ErhI	CCWWGG	2 cut(s)	437, 1152
Esp3I	CGTCTC	2 cut(s)	704, 1043
FaeI	CATG	6 cut(s)	218, 287, 388, 895, 925, 1227
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	2 cut(s)	673, 1134
FatI	CATG	6 cut(s)	214, 283, 384, 891, 921, 1223
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	2 cut(s)	401, 1251
FblI	GTMKAC	1 cut(s)	1246
Fnu4HI	GCNGC	4 cut(s)	477, 537, 693, 847
FokI	GGATG	5 cut(s)	262, 779, 918, 1076, 1181
Fsp4HI	GCNGC	4 cut(s)	477, 537, 693, 847
FspBI	CTAG	4 cut(s)	473, 527, 696, 1017
GluI	GCNGC	4 cut(s)	477, 537, 693, 847
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	2 cut(s)	139, 1181
HaeIII	GGCC	2 cut(s)	442, 1322
HapII	CCGG	2 cut(s)	461, 1198
Hin1II	CATG	6 cut(s)	218, 287, 388, 895, 925, 1227
HincII	GTYRAC	1 cut(s)	1247
HindII	GTYRAC	1 cut(s)	1247
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	305, 661, 915
HpaII	CCGG	2 cut(s)	461, 1198
HphI	GGTGA	3 cut(s)	495, 1037, 1310
Hpy166II	GTNNAC	5 cut(s)	83, 339, 704, 751, 1247
Hpy188I	TCNGA	2 cut(s)	411, 612
Hpy188III	TCNNGA	4 cut(s)	665, 912, 1091, 1198
Hpy8I	GTNNAC	5 cut(s)	83, 339, 704, 751, 1247
HpyAV	CCTTC	5 cut(s)	257, 662, 728, 843, 1266
HpyCH4III	ACNGT	4 cut(s)	715, 949, 1038, 1054
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	9 cut(s)	177, 322, 362, 539, 583, 736, 1100, 1210, 1265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 645
HpyF3I	CTNAG	5 cut(s)	107, 333, 936, 977, 1074
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	6 cut(s)	218, 287, 388, 895, 925, 1227
Kpn2I	TCCGGA	1 cut(s)	1197
Kzo9I	GATC	2 cut(s)	1027, 1093
LmnI	GCTCC	3 cut(s)	134, 601, 835
Lsp1109I	GCAGC	4 cut(s)	463, 523, 679, 833
LweI	GCATC	3 cut(s)	613, 963, 1302
MaeI	CTAG	4 cut(s)	473, 527, 696, 1017
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	6 cut(s)	96, 194, 349, 413, 943, 1283
MalI	GATC	2 cut(s)	1029, 1095
MboI	GATC	2 cut(s)	1027, 1093
MboII	GAAGA	7 cut(s)	6, 39, 45, 51, 476, 791, 978
MhlI	GDGCHC	2 cut(s)	334, 641
MluCI	AATT	7 cut(s)	18, 613, 643, 825, 1117, 1272, 1302
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	2 cut(s)	865, 1034
MroI	TCCGGA	1 cut(s)	1197
MroXI	GAANNNNTTC	2 cut(s)	468, 783
MseI	TTAA	4 cut(s)	513, 590, 1056, 1215
MslI	CAYNNNNRTG	3 cut(s)	327, 765, 896
MspI	CCGG	2 cut(s)	461, 1198
MspR9I	CCNGG	2 cut(s)	147, 578
MvaI	CCWGG	2 cut(s)	147, 578
MwoI	GCNNNNNNNGC	2 cut(s)	183, 645
NdeI	CATATG	2 cut(s)	401, 1251
NdeII	GATC	2 cut(s)	1027, 1093
NlaIII	CATG	6 cut(s)	218, 287, 388, 895, 925, 1227
NlaIV	GGNNCC	4 cut(s)	273, 786, 1089, 1150
NmuCI	GTSAC	3 cut(s)	96, 194, 413
OliI	CACNNNNGTG	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	442
PdmI	GAANNNNTTC	2 cut(s)	468, 783
PfeI	GAWTC	2 cut(s)	305, 915
PkrI	GCNGC	4 cut(s)	478, 538, 694, 848
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PpuMI	RGGWCCY	1 cut(s)	1088
Psp5II	RGGWCCY	1 cut(s)	1088
Psp6I	CCWGG	2 cut(s)	145, 576
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	145, 576
PspN4I	GGNNCC	4 cut(s)	273, 786, 1089, 1150
PspPI	GGNCC	3 cut(s)	715, 1088, 1148
PspPPI	RGGWCCY	1 cut(s)	1088
PstI	CTGCAG	1 cut(s)	541
RseI	CAYNNNNRTG	3 cut(s)	327, 765, 896
SalI	GTCGAC	1 cut(s)	1245
SaqAI	TTAA	4 cut(s)	513, 590, 1056, 1215
SatI	GCNGC	4 cut(s)	477, 537, 693, 847
Sau3AI	GATC	2 cut(s)	1027, 1093
Sau96I	GGNCC	3 cut(s)	715, 1088, 1148
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	147, 578
SduI	GDGCHC	2 cut(s)	334, 641
SfaNI	GCATC	3 cut(s)	613, 963, 1302
SfcI	CTRYAG	2 cut(s)	276, 537
SinI	GGWCC	3 cut(s)	715, 1088, 1148
SmiMI	CAYNNNNRTG	3 cut(s)	327, 765, 896
SpeI	ACTAGT	1 cut(s)	1016
Sse9I	AATT	7 cut(s)	18, 613, 643, 825, 1117, 1272, 1302
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	3 cut(s)	186, 872, 1061
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	4 cut(s)	473, 527, 696, 1017
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	145, 576
StyI	CCWWGG	2 cut(s)	437, 1152
TaaI	ACNGT	4 cut(s)	715, 949, 1038, 1054
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	2 cut(s)	1171, 1246
TasI	AATT	7 cut(s)	18, 613, 643, 825, 1117, 1272, 1302
TfiI	GAWTC	2 cut(s)	305, 915
Tru1I	TTAA	4 cut(s)	513, 590, 1056, 1215
Tru9I	TTAA	4 cut(s)	513, 590, 1056, 1215
TscAI	CASTG	2 cut(s)	105, 341
TseFI	GTSAC	3 cut(s)	96, 194, 413
TseI	GCWGC	4 cut(s)	476, 536, 692, 846
Tsp45I	GTSAC	3 cut(s)	96, 194, 413
TspDTI	ATGAA	7 cut(s)	39, 45, 51, 272, 330, 710, 972
TspRI	CASTG	2 cut(s)	105, 341
VpaK11BI	GGWCC	3 cut(s)	715, 1088, 1148
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	1246
XmnI	GAANNNNTTC	2 cut(s)	468, 783
XspI	CTAG	4 cut(s)	473, 527, 696, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.