Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

3822658 .. 3826237

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGCGGCCGAGCAGCTCCGCCAGGATGACGTGGCAGAGCAGCTCCAACAGGATGACGTGGCAGAGCAGCTCCGGCAATTGTCGTGTGCCGTTGCAAGGCTGTAGAGGTCACGAGGCATGTGGCGGCTGTTCTGCAATTCCAACAGCTGTCTGTAGCGGCTGTTCTGCAATTCATGCAGCTGTTTGCAGCAGCTGGAGTTGTTTCGACTATACAAATGGTTTAGCGGATTTAGTTGTGGGATACATGGGCGTGCCAAAATATTCTGGAATCAGCATGACTCAACATCCACAGTATGTTACAGTAAGAAATGAACGTGGAAGAGAGATGCTCAGTCTGGTTGATAATCTTTTGGAGCATGGCCAACCATTTGTCATGGAGACTGTTAAGGCATATGATAATGCTAAGTGGGGCTATAGCTCATCTGAATTTCTGGAGGACTCGCGAAATATATGCTGCTTACCATTGTTTTTACAATCTTGTTTCTCAGGAAAGGGTCCTGAACCTGCCCCAAAGTTTGTTGGCAATGTGATTGCTTTCTTGCTAAACTTGATTGGCCCAAAGGGTCTGGAATTTTCTCGTTATTCACTCGATTACCATACCATCAGGAACTACCTGTATGTAAACCGAATATGGGGAAAACAAAGAGCTGATCAGCATATGCCTTCATATGCAAAGAAGATTGTGGATACCTACAATAAGAATGGTGAAATCGATCGGATTCTTTCCAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

246

Amino Acids

27.25

Weight (kDa)

8.73

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccII	CGCG	2 cut(s)	7, 445
AciI	CCGC	5 cut(s)	7, 21, 126, 159, 227
AcoI	YGGCCR	2 cut(s)	8, 361
AcsI	RAATTY	2 cut(s)	428, 572
AfiI	CCNNNNNNNGG	2 cut(s)	98, 634
AjiI	CACGTC	2 cut(s)	33, 60
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	8 cut(s)	18, 45, 72, 149, 182, 195, 420, 650
AluI	AGCT	8 cut(s)	18, 45, 72, 149, 182, 195, 420, 650
Alw26I	GTCTC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	195
AoxI	GGCC	3 cut(s)	8, 361, 556
ApeKI	GCWGC	7 cut(s)	15, 42, 69, 179, 189, 192, 456
ApoI	RAATTY	2 cut(s)	428, 572
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	497, 557
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	497
BalI	TGGCCA	1 cut(s)	363
BauI	CACGAG	1 cut(s)	113
BbvI	GCAGC	7 cut(s)	27, 54, 81, 191, 201, 204, 443
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BciT130I	CCWGG	1 cut(s)	25
BciVI	GTATCC	2 cut(s)	236, 682
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	374
BfmI	CTRYAG	3 cut(s)	103, 154, 415
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	2 cut(s)	236, 682
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	497
BmgBI	CACGTC	2 cut(s)	33, 60
BmgT120I	GGNCC	2 cut(s)	497, 557
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpmI	CTGGAG	2 cut(s)	217, 455
Bsa29I	ATCGAT	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 634
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	714
BseGI	GGATG	3 cut(s)	33, 60, 286
BseLI	CCNNNNNNNGG	2 cut(s)	98, 634
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	346, 501
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	7 cut(s)	27, 54, 81, 191, 201, 204, 443
Bsh1236I	CGCG	2 cut(s)	7, 445
Bsh1285I	CGRYCG	2 cut(s)	11, 718
BshFI	GGCC	3 cut(s)	10, 363, 558
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	2 cut(s)	11, 718
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	98, 634
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	10, 363, 558
Bsp143I	GATC	2 cut(s)	652, 715
Bsp68I	TCGCGA	1 cut(s)	445
BspACI	CCGC	5 cut(s)	7, 21, 126, 159, 227
BspANI	GGCC	3 cut(s)	10, 363, 558
BspCNI	CTCAG	2 cut(s)	345, 500
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	2 cut(s)	7, 445
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	532
BssMI	GATC	2 cut(s)	652, 715
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	294, 304, 385
Bst6I	CTCTTC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	332, 405, 487
BstF5I	GGATG	3 cut(s)	33, 60, 286
BstFNI	CGCG	2 cut(s)	7, 445
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	655, 718
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	652, 715
BstMCI	CGRYCG	2 cut(s)	11, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 176
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	3 cut(s)	103, 154, 415
BstUI	CGCG	2 cut(s)	7, 445
BstV1I	GCAGC	7 cut(s)	27, 54, 81, 191, 201, 204, 443
BstZI	CGGCCG	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	714
BsuI	GTATCC	2 cut(s)	236, 682
BsuRI	GGCC	3 cut(s)	10, 363, 558
BsuTUI	ATCGAT	1 cut(s)	714
BtrI	CACGTC	2 cut(s)	33, 60
BtsCI	GGATG	3 cut(s)	33, 60, 286
BtuMI	TCGCGA	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	497, 557
ClaI	ATCGAT	1 cut(s)	714
CviAII	CATG	6 cut(s)	120, 176, 247, 277, 359, 376
DdeI	CTNAG	3 cut(s)	332, 405, 487
DpnI	GATC	2 cut(s)	654, 717
DpnII	GATC	2 cut(s)	652, 715
EaeI	YGGCCR	2 cut(s)	8, 361
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	497
Eco52I	CGGCCG	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	6 cut(s)	123, 179, 250, 280, 362, 379
FatI	CATG	6 cut(s)	119, 175, 246, 276, 358, 375
FauNDI	CATATG	3 cut(s)	394, 660, 670
FbaI	TGATCA	1 cut(s)	652
FokI	GGATG	3 cut(s)	40, 67, 273
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	2 cut(s)	217, 455
HaeIII	GGCC	3 cut(s)	10, 363, 558
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	6 cut(s)	123, 179, 250, 280, 362, 379
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	270, 280, 440, 721
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	2 cut(s)	427, 720
Hpy188III	TCNNGA	8 cut(s)	113, 267, 434, 444, 489, 500, 569, 607
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	1 cut(s)	675
HpyCH4III	ACNGT	3 cut(s)	294, 304, 385
HpyCH4IV	ACGT	3 cut(s)	32, 59, 316
HpyCH4V	TGCA	6 cut(s)	97, 137, 170, 179, 189, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 176
HpyF3I	CTNAG	3 cut(s)	332, 405, 487
HpySE526I	ACGT	3 cut(s)	32, 59, 316
Hsp92II	CATG	6 cut(s)	123, 179, 250, 280, 362, 379
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	652, 715
LmnI	GCTCC	4 cut(s)	23, 50, 77, 355
Lsp1109I	GCAGC	7 cut(s)	27, 54, 81, 191, 201, 204, 443
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	3 cut(s)	32, 59, 316
MaeIII	GTNAC	2 cut(s)	110, 298
MalI	GATC	2 cut(s)	654, 717
MboI	GATC	2 cut(s)	652, 715
MboII	GAAGA	2 cut(s)	333, 691
MfeI	CAATTG	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	79, 138, 171, 428, 572
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	2 cut(s)	274, 434
MmeI	TCCRAC	2 cut(s)	72, 167
MnlI	CCTC	3 cut(s)	101, 109, 430
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	3 cut(s)	149, 182, 195
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	2 cut(s)	7, 445
MwoI	GCNNNNNNNGC	2 cut(s)	75, 176
NdeI	CATATG	3 cut(s)	394, 660, 670
NdeII	GATC	2 cut(s)	652, 715
NlaIII	CATG	6 cut(s)	123, 179, 250, 280, 362, 379
NlaIV	GGNNCC	1 cut(s)	498
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	110
NruI	TCGCGA	1 cut(s)	445
NspI	RCATGY	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	270, 721
Ple19I	CGATCG	1 cut(s)	718
PleI	GAGTC	2 cut(s)	274, 434
PpsI	GAGTC	2 cut(s)	274, 434
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	497, 557
PspPPI	RGGWCCY	1 cut(s)	497
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
PstNI	CAGNNNCTG	1 cut(s)	195
PvuI	CGATCG	1 cut(s)	718
PvuII	CAGCTG	3 cut(s)	149, 182, 195
RruI	TCGCGA	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	652, 715
Sau96I	GGNCC	2 cut(s)	497, 557
SchI	GAGTC	2 cut(s)	274, 434
ScrFI	CCNGG	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	3 cut(s)	103, 154, 415
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	79, 138, 171, 428, 572
SsiI	CCGC	5 cut(s)	7, 21, 126, 159, 227
SspI	AATATT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	294, 304, 385
TaiI	ACGT	3 cut(s)	35, 62, 319
TaqI	TCGA	3 cut(s)	207, 591, 714
TasI	AATT	5 cut(s)	79, 138, 171, 428, 572
TauI	GCSGC	3 cut(s)	10, 129, 162
TfiI	GAWTC	2 cut(s)	270, 721
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	7 cut(s)	15, 42, 69, 179, 189, 192, 456
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	164, 327, 657
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	428, 572
XceI	RCATGY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.