Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

13479272 .. 13484541

Gene Structure 5270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTATTCTCTTTCTTCAATTCCTCTCCCACTCTCCATCGTTTCCTCTTCATCTTCATCTTCATCTTCATCTAAAGGAACACAAGGTAAACCCAACTCAAAGTCACTGAAGCTTAGAGAGGACTGGAGACAACGCTCCAAACCCATTCCCCCTGGTGGCACTTACCCAGCTAAAGACCATTGCAGTCGTTGCGGGTTGTGTGACACCTATTACATTGCCCATGTCAAGGAAGCCTGTGCTTTTTTGGGAGACGGGATGTCCAAGATTGAAGGTTTGGAACCTGTAGTTCATGGTAGAGGGAGAAAGCCAGATTCTTTAGATGAAATGCACTTGGGTATCTATGAGGAGTTGTTGTACGCCCGTAAGGTCAAGCCTGTTGAAGGTGCTCAGTGGACGGGGATAGTAACAACTATTGCAATAGAAATGCTAAAATCAGGCATGGTAGAAGCTGTCATATGTGTTCAGAGTGACCCAGAGGACAGATTTTCTCCAAGGCCTGTATTAGCAAGGACACCGGAAGAAGTTCTAGCTGCTAAAGGTGTCAAGCCGACATTATCACCTAATCTTAATACCCTTGCCCTAGTTGAGGCTGCAGGTGTAAAGAAACTTCTATTCTGTGGTGTGGGTTGCCAGGTGCAAGCATTAAGGTCTGTGGAGCATCATCTGAATTTGGAGAAGCTGTATGTGTTGGGCACAAATTGCGTGGATAATGGGACTCGTGAAGGGCTTGATAAGTTTCTAAAGGCTGCTAGTAGTGAACCAGAGACGGTCCTTCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATTGAAGAGGTTCCTTATTTCTCCCTGCCAGCAAATGATTTAGTTGATGTAATTGCTCCTTCTTGTTATAGCTGCTTTGACTACACAAATGCTTTGGCGGATTTAGTGGTTGGATACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACACAACATCCTCAGTATGTTACGGTAAGAAATGAACGTGGAAGAGAGATGCTCAGTCTGGTTGAAAAACATTTGGAGATTACTCCAACAACTAGTAGTGGTGATCGCAGACCATTTGTATTGGAGACGGTTAAGGCGGATGATACTGCTAAGATGGGGAGGGGTCCTGATCCTGCACCAAAGTTCGTTGGCAATTTGATTGCTTTCTTGCTAAACTTGGTTGGTCCCAAGGGGCTGGAGTTTGCTCGATATTCACTTGATTACCATACCATCCGGAACTATCTGCATATTAACCGAACATGGGGAAAAGAAAGAGCTGGTCGACATATGCCTTCGTATGCAAAGAAAATTGTGGATAGTTACAACAAGAATGGTGAAATTGATAAGATGCTTTCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

460

Amino Acids

50.86

Weight (kDa)

8.19

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FrhB_FdhB_N	PF04422	118 - 192	4.4e-25	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
FrhB_FdhB_C	PF04432	201 - 355	7.8e-27	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	1300
AccIII	TCCGGA	1 cut(s)	1251
AciI	CCGC	3 cut(s)	192, 926, 1115
AclWI	GGATC	1 cut(s)	1142
AcoI	YGGCCR	1 cut(s)	1374
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
AgsI	TTSAA	6 cut(s)	18, 269, 380, 811, 833, 1043
AhdI	GACNNNNNGTC	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	1070
AjnI	CCWGG	2 cut(s)	151, 630
AluBI	AGCT	7 cut(s)	112, 170, 449, 530, 679, 900, 1295
AluI	AGCT	7 cut(s)	112, 170, 449, 530, 679, 900, 1295
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	4 cut(s)	121, 243, 758, 1097
AlwI	GGATC	1 cut(s)	1142
Aor13HI	TCCGGA	1 cut(s)	1251
AoxI	GGCC	2 cut(s)	494, 1374
ApeKI	GCWGC	4 cut(s)	530, 590, 746, 900
ApoI	RAATTY	1 cut(s)	667
Asp700I	GAANNNNTTC	2 cut(s)	522, 837
AspS9I	GGNCC	3 cut(s)	769, 1142, 1202
AsuHPI	GGTGA	3 cut(s)	549, 1091, 1364
AvaII	GGWCC	3 cut(s)	769, 1142, 1202
BaeGI	GKGCMC	1 cut(s)	695
BaeI	ACNNNNGTAYC	4 cut(s)	319, 352, 934, 967
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	517, 577, 733, 887
BccI	CCATC	4 cut(s)	44, 815, 1126, 1256
BciT130I	CCWGG	2 cut(s)	153, 632
BciVI	GTATCC	1 cut(s)	935
BcoDI	GTCTC	4 cut(s)	121, 243, 758, 1097
BcuI	ACTAGT	1 cut(s)	1070
BfaI	CTAG	4 cut(s)	527, 581, 750, 1071
BfmI	CTRYAG	2 cut(s)	282, 591
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	4 cut(s)	531, 591, 747, 901
BlsI	GCNGC	4 cut(s)	532, 592, 748, 902
Bme1390I	CCNGG	2 cut(s)	153, 632
Bme18I	GGWCC	3 cut(s)	769, 1142, 1202
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	769, 1142, 1202
BmiI	GGNNCC	4 cut(s)	279, 840, 1143, 1204
BmrFI	CCNGG	2 cut(s)	153, 632
BmsI	GCATC	3 cut(s)	667, 1017, 1356
BplI	GAGNNNNNCTC	2 cut(s)	1014, 1046
BpmI	CTGGAG	2 cut(s)	145, 1235
BsaJI	CCNNGG	3 cut(s)	151, 491, 1206
BsaWI	WCCGGW	2 cut(s)	514, 1251
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 665, 695
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	2 cut(s)	178, 213
BseAI	TCCGGA	1 cut(s)	1251
BseBI	CCWGG	2 cut(s)	153, 632
BseDI	CCNNGG	3 cut(s)	151, 491, 1206
BseGI	GGATG	5 cut(s)	261, 826, 985, 1123, 1248
BseLI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
BseMI	GCAATG	2 cut(s)	178, 213
BseMII	CTCAG	3 cut(s)	401, 1004, 1045
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	4 cut(s)	517, 577, 733, 887
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	1137
BshFI	GGCC	2 cut(s)	496, 1376
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	515, 1252
BslFI	GGGAC	2 cut(s)	727, 1188
BslI	CCNNNNNNNGG	5 cut(s)	155, 226, 380, 586, 1279
BsmAI	GTCTC	4 cut(s)	121, 243, 758, 1097
BsmBI	CGTCTC	3 cut(s)	243, 758, 1097
BsmFI	GGGAC	2 cut(s)	727, 1188
BsnI	GGCC	2 cut(s)	496, 1376
Bsp1286I	GDGCHC	2 cut(s)	388, 695
Bsp13I	TCCGGA	1 cut(s)	1251
Bsp143I	GATC	2 cut(s)	1081, 1147
BspACI	CCGC	3 cut(s)	192, 926, 1115
BspANI	GGCC	2 cut(s)	496, 1376
BspCNI	CTCAG	3 cut(s)	400, 1003, 1044
BspEI	TCCGGA	1 cut(s)	1251
BspLI	GGNNCC	4 cut(s)	279, 840, 1143, 1204
BspMAI	CTGCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	1142
BsrDI	GCAATG	2 cut(s)	178, 213
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	151, 491, 1206
BssMI	GATC	2 cut(s)	1081, 1147
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	491, 1206
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	153, 632
Bst4CI	ACNGT	3 cut(s)	769, 1003, 1108
Bst6I	CTCTTC	3 cut(s)	52, 828, 1015
BstAPI	GCANNNNNTGC	2 cut(s)	189, 699
BstC8I	GCNNGC	2 cut(s)	639, 858
BstDEI	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
BstENI	CCTNNNNNAGG	2 cut(s)	378, 584
BstF5I	GGATG	5 cut(s)	261, 826, 985, 1123, 1248
BstKTI	GATC	2 cut(s)	1084, 1150
BstMAI	GTCTC	4 cut(s)	121, 243, 758, 1097
BstMBI	GATC	2 cut(s)	1081, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 699
BstNI	CCWGG	2 cut(s)	153, 632
BstSCI	CCNGG	2 cut(s)	151, 630
BstSFI	CTRYAG	2 cut(s)	282, 591
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	4 cut(s)	517, 577, 733, 887
BstXI	CCANNNNNNTGG	1 cut(s)	1213
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	2 cut(s)	496, 1376
BtsCI	GGATG	5 cut(s)	261, 826, 985, 1123, 1248
BtsIMutI	CAGTG	2 cut(s)	104, 395
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	639, 858
Cfr13I	GGNCC	3 cut(s)	769, 1142, 1202
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	6 cut(s)	221, 290, 439, 946, 976, 1278
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
DpnI	GATC	2 cut(s)	1083, 1149
DpnII	GATC	2 cut(s)	1081, 1147
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	1374
Eam1104I	CTCTTC	3 cut(s)	52, 828, 1015
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	3 cut(s)	52, 828, 1015
EciI	GGCGGA	2 cut(s)	941, 1130
Eco130I	CCWWGG	2 cut(s)	491, 1206
Eco147I	AGGCCT	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	769, 1142, 1202
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	2 cut(s)	378, 584
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoRII	CCWGG	2 cut(s)	151, 630
EcoT14I	CCWWGG	2 cut(s)	491, 1206
ErhI	CCWWGG	2 cut(s)	491, 1206
Esp3I	CGTCTC	3 cut(s)	243, 758, 1097
FaeI	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	2 cut(s)	727, 1188
FatI	CATG	6 cut(s)	220, 289, 438, 945, 975, 1277
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	2 cut(s)	455, 1305
FblI	GTMKAC	1 cut(s)	1300
Fnu4HI	GCNGC	4 cut(s)	531, 591, 747, 901
FokI	GGATG	5 cut(s)	268, 833, 972, 1130, 1235
Fsp4HI	GCNGC	4 cut(s)	531, 591, 747, 901
FspBI	CTAG	4 cut(s)	527, 581, 750, 1071
GluI	GCNGC	4 cut(s)	531, 591, 747, 901
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	145, 1235
HaeIII	GGCC	2 cut(s)	496, 1376
HapII	CCGG	2 cut(s)	515, 1252
Hin1II	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
HincII	GTYRAC	1 cut(s)	1301
HindII	GTYRAC	1 cut(s)	1301
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	311, 715, 969
HpaII	CCGG	2 cut(s)	515, 1252
HphI	GGTGA	3 cut(s)	549, 1091, 1364
Hpy166II	GTNNAC	5 cut(s)	89, 393, 758, 805, 1301
Hpy188I	TCNGA	2 cut(s)	465, 666
Hpy188III	TCNNGA	4 cut(s)	719, 966, 1145, 1252
Hpy8I	GTNNAC	5 cut(s)	89, 393, 758, 805, 1301
HpyAV	CCTTC	6 cut(s)	263, 374, 716, 782, 897, 1320
HpyCH4III	ACNGT	3 cut(s)	769, 1003, 1108
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	9 cut(s)	183, 328, 416, 593, 637, 790, 1154, 1264, 1319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 699
HpyF3I	CTNAG	5 cut(s)	113, 387, 990, 1031, 1128
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
Kpn2I	TCCGGA	1 cut(s)	1251
Kzo9I	GATC	2 cut(s)	1081, 1147
LmnI	GCTCC	3 cut(s)	140, 655, 889
Lsp1109I	GCAGC	4 cut(s)	517, 577, 733, 887
LweI	GCATC	3 cut(s)	667, 1017, 1356
MaeI	CTAG	4 cut(s)	527, 581, 750, 1071
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	6 cut(s)	102, 200, 403, 467, 997, 1337
MalI	GATC	2 cut(s)	1083, 1149
MboI	GATC	2 cut(s)	1081, 1147
MboII	GAAGA	8 cut(s)	6, 39, 45, 51, 57, 530, 845, 1032
MhlI	GDGCHC	2 cut(s)	388, 695
MluCI	AATT	7 cut(s)	18, 667, 697, 879, 1171, 1326, 1356
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	2 cut(s)	919, 1088
MroI	TCCGGA	1 cut(s)	1251
MroXI	GAANNNNTTC	2 cut(s)	522, 837
MseI	TTAA	4 cut(s)	567, 644, 1110, 1269
MslI	CAYNNNNRTG	2 cut(s)	819, 950
MspI	CCGG	2 cut(s)	515, 1252
MspR9I	CCNGG	2 cut(s)	153, 632
MvaI	CCWGG	2 cut(s)	153, 632
MwoI	GCNNNNNNNGC	2 cut(s)	189, 699
NdeI	CATATG	2 cut(s)	455, 1305
NdeII	GATC	2 cut(s)	1081, 1147
NlaIII	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
NlaIV	GGNNCC	4 cut(s)	279, 840, 1143, 1204
NmuCI	GTSAC	3 cut(s)	102, 200, 467
PaqCI	CACCTGC	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	522, 837
PfeI	GAWTC	2 cut(s)	311, 969
PkrI	GCNGC	4 cut(s)	532, 592, 748, 902
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	1142
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	2 cut(s)	151, 630
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	151, 630
PspN4I	GGNNCC	4 cut(s)	279, 840, 1143, 1204
PspPI	GGNCC	3 cut(s)	769, 1142, 1202
PspPPI	RGGWCCY	1 cut(s)	1142
PstI	CTGCAG	1 cut(s)	595
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	2 cut(s)	819, 950
SalI	GTCGAC	1 cut(s)	1299
SaqAI	TTAA	4 cut(s)	567, 644, 1110, 1269
SatI	GCNGC	4 cut(s)	531, 591, 747, 901
Sau3AI	GATC	2 cut(s)	1081, 1147
Sau96I	GGNCC	3 cut(s)	769, 1142, 1202
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	153, 632
SduI	GDGCHC	2 cut(s)	388, 695
SfaNI	GCATC	3 cut(s)	667, 1017, 1356
SfcI	CTRYAG	2 cut(s)	282, 591
SinI	GGWCC	3 cut(s)	769, 1142, 1202
SmiMI	CAYNNNNRTG	2 cut(s)	819, 950
SpeI	ACTAGT	1 cut(s)	1070
Sse9I	AATT	7 cut(s)	18, 667, 697, 879, 1171, 1326, 1356
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	3 cut(s)	192, 926, 1115
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	4 cut(s)	527, 581, 750, 1071
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	151, 630
StyI	CCWWGG	2 cut(s)	491, 1206
TaaI	ACNGT	3 cut(s)	769, 1003, 1108
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	2 cut(s)	1225, 1300
TasI	AATT	7 cut(s)	18, 667, 697, 879, 1171, 1326, 1356
TfiI	GAWTC	2 cut(s)	311, 969
Tru1I	TTAA	4 cut(s)	567, 644, 1110, 1269
Tru9I	TTAA	4 cut(s)	567, 644, 1110, 1269
TscAI	CASTG	2 cut(s)	111, 395
TseFI	GTSAC	3 cut(s)	102, 200, 467
TseI	GCWGC	4 cut(s)	530, 590, 746, 900
Tsp45I	GTSAC	3 cut(s)	102, 200, 467
TspDTI	ATGAA	8 cut(s)	39, 45, 51, 57, 278, 336, 764, 1026
TspRI	CASTG	2 cut(s)	111, 395
VpaK11BI	GGWCC	3 cut(s)	769, 1142, 1202
XagI	CCTNNNNNAGG	2 cut(s)	378, 584
XapI	RAATTY	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	1300
XmnI	GAANNNNTTC	2 cut(s)	522, 837
XspI	CTAG	4 cut(s)	527, 581, 750, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.