Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

9631666 .. 9637783

Gene Structure 6118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGTCTTCTCTTTCTTCAATTCCTCTCTCACTCTCCATCGTTTCCTCATCTTCATCTTCATCTTCATCTAAAGGAACACAAGGTAAACCCAACTCAAAGTCACTGAAGCTTAGAGAGGACTGGAGACAACGCTCCAAACCCATTCCTCCTGGTGGCACTTACCCAGCTAAAGACCATTGCAGTCGTTGCGGGTTGTGTGACACCTATTACATTGCCCATGTCAAGGAAGCCTGTGCTTTTTTGGGAGATGGGATGTCCAAGATTGAAGGTTTGGAACCTGTAGTTCATGGTAGAGGGAGAAAGCCAGATTCTTTAGATGAAATGCACTTGGGTGTCTATGAGGAGTTGTTGTATGCCCGTAAGGTCAAGCCTGTTGAAGGTGCTCAGTGGACGGGGATAGTAACAACTGTTGCAATAGAAATGCTAAAATCAGGCATGGTAGAAGCTGTCATATGTGTTCAGAGTGACCCAGAGGACAGATTTTCTCCAAGGCCTGTATTAGCAAGGACACCGGAAGAAGTTCTAGCTGCTAAAGGTGTCAAGCCGACATTATCACCTAATCTTAATACCCTTGCCCTAGTTGAGGCTGCAGGTGTAAAGAAACTTCTATTCTGTGGTGTAGGTTGCCAGGTGCAAGCATTAAGGTCTGTGGAGCACCATCTGAATTTGGAGAAGCTGTATGTGTTGGGCACAAATTGCGTGGATAATGGGACTCGTGAAGGGCTTGATAAGTTTCTAAAGGCTGCTAGTAGTGAACCAGAGACGGTCCTTCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATTGAAGAGGTTCCTTATTTCTCCCTGCCAGCAAATGATTTAGTTGATGTAATTGCTCCTTCTTGTTATAGCTGCTTTGACTACACAAATGCTTTGGCGGATTTAGTGGTTGGATACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACACAACATCCTCAGTATGTTACGGTAAGAAATGAACGTGGAAGAGAGATGCTCAGTCTGGTTGAAAAACATTTGGAGATTACTCCTACAACTAGTAGTGGTGATCGCAGACCATTTGTATTGGAGACGGTTAAGGCGGATGATACTGCTAAGATGGGGAGGGGTCCTGATCCTGCACCAAAGTTCGTTGGCAATTTGATTGCTTTCTTGCTAAACTTGGTTGGTCCCAAGGGGCTGGAGTTTGCTCGATATTCACTTGATTACCATACCATCCGGAACTATCTGCATATTAACCGAACCTGGGGAAAAGAAAGAGCTGGTCGACATATGCCTTCGTATGCAAAGAAAATTGTGGATAGTTACAACAAGAATGGTGAAATTGATAAGATGCTTTCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

459

Amino Acids

50.66

Weight (kDa)

8.19

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FrhB_FdhB_N	PF04422	117 - 191	1.5e-24	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
FrhB_FdhB_C	PF04432	200 - 354	7.8e-27	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	1297
AccIII	TCCGGA	1 cut(s)	1248
AciI	CCGC	3 cut(s)	189, 923, 1112
AclWI	GGATC	1 cut(s)	1139
AcoI	YGGCCR	1 cut(s)	1371
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	152, 223, 377, 583, 1276
AgsI	TTSAA	6 cut(s)	18, 266, 377, 808, 830, 1040
AhlI	ACTAGT	1 cut(s)	1067
AjnI	CCWGG	3 cut(s)	148, 627, 1274
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	7 cut(s)	109, 167, 446, 527, 676, 897, 1292
AluI	AGCT	7 cut(s)	109, 167, 446, 527, 676, 897, 1292
Alw21I	GWGCWC	2 cut(s)	385, 657
Alw26I	GTCTC	3 cut(s)	118, 755, 1094
AlwI	GGATC	1 cut(s)	1139
Aor13HI	TCCGGA	1 cut(s)	1248
AoxI	GGCC	2 cut(s)	491, 1371
ApeKI	GCWGC	4 cut(s)	527, 587, 743, 897
ApoI	RAATTY	1 cut(s)	664
Asp700I	GAANNNNTTC	2 cut(s)	519, 834
AspS9I	GGNCC	3 cut(s)	766, 1139, 1199
AsuHPI	GGTGA	3 cut(s)	546, 1088, 1361
AvaII	GGWCC	3 cut(s)	766, 1139, 1199
BaeGI	GKGCMC	1 cut(s)	692
BaeI	ACNNNNGTAYC	2 cut(s)	931, 964
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	385, 657
BbvI	GCAGC	4 cut(s)	514, 574, 730, 884
BccI	CCATC	6 cut(s)	44, 242, 666, 812, 1123, 1253
BciT130I	CCWGG	3 cut(s)	150, 629, 1276
BciVI	GTATCC	1 cut(s)	932
BcoDI	GTCTC	3 cut(s)	118, 755, 1094
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	4 cut(s)	524, 578, 747, 1068
BfmI	CTRYAG	2 cut(s)	279, 588
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	932
BisI	GCNGC	4 cut(s)	528, 588, 744, 898
BlsI	GCNGC	4 cut(s)	529, 589, 745, 899
Bme1390I	CCNGG	3 cut(s)	150, 629, 1276
Bme18I	GGWCC	3 cut(s)	766, 1139, 1199
BmgT120I	GGNCC	3 cut(s)	766, 1139, 1199
BmiI	GGNNCC	4 cut(s)	276, 837, 1140, 1201
BmrFI	CCNGG	3 cut(s)	150, 629, 1276
BmsI	GCATC	2 cut(s)	1014, 1353
BplI	GAGNNNNNCTC	2 cut(s)	1011, 1043
BpmI	CTGGAG	2 cut(s)	142, 1232
BsaJI	CCNNGG	3 cut(s)	488, 1203, 1275
BsaWI	WCCGGW	2 cut(s)	511, 1248
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 662, 692
Bsc4I	CCNNNNNNNGG	5 cut(s)	152, 223, 377, 583, 1276
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	175, 210
BseAI	TCCGGA	1 cut(s)	1248
BseBI	CCWGG	3 cut(s)	150, 629, 1276
BseDI	CCNNGG	3 cut(s)	488, 1203, 1275
BseGI	GGATG	5 cut(s)	258, 823, 982, 1120, 1245
BseLI	CCNNNNNNNGG	5 cut(s)	152, 223, 377, 583, 1276
BseMI	GCAATG	2 cut(s)	175, 210
BseMII	CTCAG	3 cut(s)	398, 1001, 1042
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	4 cut(s)	514, 574, 730, 884
BseYI	CCCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	1134
BshFI	GGCC	2 cut(s)	493, 1373
BsiHKAI	GWGCWC	2 cut(s)	385, 657
BsiSI	CCGG	2 cut(s)	512, 1249
BslFI	GGGAC	2 cut(s)	724, 1185
BslI	CCNNNNNNNGG	5 cut(s)	152, 223, 377, 583, 1276
BsmAI	GTCTC	3 cut(s)	118, 755, 1094
BsmBI	CGTCTC	2 cut(s)	755, 1094
BsmFI	GGGAC	2 cut(s)	724, 1185
BsnI	GGCC	2 cut(s)	493, 1373
Bsp1286I	GDGCHC	3 cut(s)	385, 657, 692
Bsp13I	TCCGGA	1 cut(s)	1248
Bsp143I	GATC	2 cut(s)	1078, 1144
BspACI	CCGC	3 cut(s)	189, 923, 1112
BspANI	GGCC	2 cut(s)	493, 1373
BspCNI	CTCAG	3 cut(s)	397, 1000, 1041
BspEI	TCCGGA	1 cut(s)	1248
BspLI	GGNNCC	4 cut(s)	276, 837, 1140, 1201
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	1139
BsrDI	GCAATG	2 cut(s)	175, 210
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	488, 1203, 1275
BssMI	GATC	2 cut(s)	1078, 1144
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	2 cut(s)	488, 1203
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	3 cut(s)	150, 629, 1276
Bst4CI	ACNGT	4 cut(s)	409, 766, 1000, 1105
Bst6I	CTCTTC	2 cut(s)	825, 1012
BstAPI	GCANNNNNTGC	2 cut(s)	186, 696
BstC8I	GCNNGC	2 cut(s)	636, 855
BstDEI	CTNAG	5 cut(s)	110, 384, 987, 1028, 1125
BstENI	CCTNNNNNAGG	2 cut(s)	375, 581
BstF5I	GGATG	5 cut(s)	258, 823, 982, 1120, 1245
BstKTI	GATC	2 cut(s)	1081, 1147
BstMAI	GTCTC	3 cut(s)	118, 755, 1094
BstMBI	GATC	2 cut(s)	1078, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 696
BstNI	CCWGG	3 cut(s)	150, 629, 1276
BstSCI	CCNGG	3 cut(s)	148, 627, 1274
BstSFI	CTRYAG	2 cut(s)	279, 588
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	4 cut(s)	514, 574, 730, 884
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	2 cut(s)	493, 1373
BtsCI	GGATG	5 cut(s)	258, 823, 982, 1120, 1245
BtsIMutI	CAGTG	2 cut(s)	101, 392
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	636, 855
Cfr13I	GGNCC	3 cut(s)	766, 1139, 1199
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	5 cut(s)	218, 287, 436, 943, 973
DdeI	CTNAG	5 cut(s)	110, 384, 987, 1028, 1125
DpnI	GATC	2 cut(s)	1080, 1146
DpnII	GATC	2 cut(s)	1078, 1144
EaeI	YGGCCR	1 cut(s)	1371
Eam1104I	CTCTTC	2 cut(s)	825, 1012
EarI	CTCTTC	2 cut(s)	825, 1012
EciI	GGCGGA	2 cut(s)	938, 1127
Eco130I	CCWWGG	2 cut(s)	488, 1203
Eco147I	AGGCCT	1 cut(s)	493
Eco47I	GGWCC	3 cut(s)	766, 1139, 1199
Eco57I	CTGAAG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	2 cut(s)	375, 581
EcoO109I	RGGNCCY	1 cut(s)	1139
EcoRII	CCWGG	3 cut(s)	148, 627, 1274
EcoT14I	CCWWGG	2 cut(s)	488, 1203
ErhI	CCWWGG	2 cut(s)	488, 1203
Esp3I	CGTCTC	2 cut(s)	755, 1094
FaeI	CATG	5 cut(s)	221, 290, 439, 946, 976
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FaqI	GGGAC	2 cut(s)	724, 1185
FatI	CATG	5 cut(s)	217, 286, 435, 942, 972
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	2 cut(s)	452, 1302
FblI	GTMKAC	1 cut(s)	1297
Fnu4HI	GCNGC	4 cut(s)	528, 588, 744, 898
FokI	GGATG	5 cut(s)	265, 830, 969, 1127, 1232
Fsp4HI	GCNGC	4 cut(s)	528, 588, 744, 898
FspBI	CTAG	4 cut(s)	524, 578, 747, 1068
GluI	GCNGC	4 cut(s)	528, 588, 744, 898
GsaI	CCCAGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	142, 1232
HaeIII	GGCC	2 cut(s)	493, 1373
HapII	CCGG	2 cut(s)	512, 1249
Hin1II	CATG	5 cut(s)	221, 290, 439, 946, 976
HincII	GTYRAC	1 cut(s)	1298
HindII	GTYRAC	1 cut(s)	1298
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	308, 712, 966
HpaII	CCGG	2 cut(s)	512, 1249
HphI	GGTGA	3 cut(s)	546, 1088, 1361
Hpy166II	GTNNAC	5 cut(s)	86, 390, 755, 802, 1298
Hpy188I	TCNGA	2 cut(s)	462, 663
Hpy188III	TCNNGA	4 cut(s)	716, 963, 1142, 1249
Hpy8I	GTNNAC	5 cut(s)	86, 390, 755, 802, 1298
HpyAV	CCTTC	6 cut(s)	260, 371, 713, 779, 894, 1317
HpyCH4III	ACNGT	4 cut(s)	409, 766, 1000, 1105
HpyCH4IV	ACGT	1 cut(s)	1012
HpyCH4V	TGCA	9 cut(s)	180, 325, 413, 590, 634, 787, 1151, 1261, 1316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 696
HpyF3I	CTNAG	5 cut(s)	110, 384, 987, 1028, 1125
HpySE526I	ACGT	1 cut(s)	1012
Hsp92II	CATG	5 cut(s)	221, 290, 439, 946, 976
Kpn2I	TCCGGA	1 cut(s)	1248
Kzo9I	GATC	2 cut(s)	1078, 1144
LmnI	GCTCC	3 cut(s)	137, 652, 886
Lsp1109I	GCAGC	4 cut(s)	514, 574, 730, 884
LweI	GCATC	2 cut(s)	1014, 1353
MaeI	CTAG	4 cut(s)	524, 578, 747, 1068
MaeII	ACGT	1 cut(s)	1012
MaeIII	GTNAC	6 cut(s)	99, 197, 400, 464, 994, 1334
MalI	GATC	2 cut(s)	1080, 1146
MboI	GATC	2 cut(s)	1078, 1144
MboII	GAAGA	7 cut(s)	6, 42, 48, 54, 527, 842, 1029
MhlI	GDGCHC	3 cut(s)	385, 657, 692
MluCI	AATT	7 cut(s)	18, 664, 694, 876, 1168, 1323, 1353
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	916
MroI	TCCGGA	1 cut(s)	1248
MroXI	GAANNNNTTC	2 cut(s)	519, 834
MseI	TTAA	4 cut(s)	564, 641, 1107, 1266
MslI	CAYNNNNRTG	3 cut(s)	330, 816, 947
MspI	CCGG	2 cut(s)	512, 1249
MspR9I	CCNGG	3 cut(s)	150, 629, 1276
MvaI	CCWGG	3 cut(s)	150, 629, 1276
MwoI	GCNNNNNNNGC	2 cut(s)	186, 696
NdeI	CATATG	2 cut(s)	452, 1302
NdeII	GATC	2 cut(s)	1078, 1144
NlaIII	CATG	5 cut(s)	221, 290, 439, 946, 976
NlaIV	GGNNCC	4 cut(s)	276, 837, 1140, 1201
NmuCI	GTSAC	3 cut(s)	99, 197, 464
OliI	CACNNNNGTG	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	493
PdmI	GAANNNNTTC	2 cut(s)	519, 834
PfeI	GAWTC	2 cut(s)	308, 966
PkrI	GCNGC	4 cut(s)	529, 589, 745, 899
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	1139
Psp5II	RGGWCCY	1 cut(s)	1139
Psp6I	CCWGG	3 cut(s)	148, 627, 1274
PspFI	CCCAGC	1 cut(s)	163
PspGI	CCWGG	3 cut(s)	148, 627, 1274
PspN4I	GGNNCC	4 cut(s)	276, 837, 1140, 1201
PspPI	GGNCC	3 cut(s)	766, 1139, 1199
PspPPI	RGGWCCY	1 cut(s)	1139
PstI	CTGCAG	1 cut(s)	592
RseI	CAYNNNNRTG	3 cut(s)	330, 816, 947
SalI	GTCGAC	1 cut(s)	1296
SaqAI	TTAA	4 cut(s)	564, 641, 1107, 1266
SatI	GCNGC	4 cut(s)	528, 588, 744, 898
Sau3AI	GATC	2 cut(s)	1078, 1144
Sau96I	GGNCC	3 cut(s)	766, 1139, 1199
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	150, 629, 1276
SduI	GDGCHC	3 cut(s)	385, 657, 692
SfaNI	GCATC	2 cut(s)	1014, 1353
SfcI	CTRYAG	2 cut(s)	279, 588
SinI	GGWCC	3 cut(s)	766, 1139, 1199
SmiMI	CAYNNNNRTG	3 cut(s)	330, 816, 947
SpeI	ACTAGT	1 cut(s)	1067
Sse9I	AATT	7 cut(s)	18, 664, 694, 876, 1168, 1323, 1353
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	189, 923, 1112
SspI	AATATT	1 cut(s)	959
SspMI	CTAG	4 cut(s)	524, 578, 747, 1068
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	3 cut(s)	148, 627, 1274
StyI	CCWWGG	2 cut(s)	488, 1203
TaaI	ACNGT	4 cut(s)	409, 766, 1000, 1105
TaiI	ACGT	1 cut(s)	1015
TaqI	TCGA	2 cut(s)	1222, 1297
TasI	AATT	7 cut(s)	18, 664, 694, 876, 1168, 1323, 1353
TfiI	GAWTC	2 cut(s)	308, 966
Tru1I	TTAA	4 cut(s)	564, 641, 1107, 1266
Tru9I	TTAA	4 cut(s)	564, 641, 1107, 1266
TscAI	CASTG	2 cut(s)	108, 392
TseFI	GTSAC	3 cut(s)	99, 197, 464
TseI	GCWGC	4 cut(s)	527, 587, 743, 897
Tsp45I	GTSAC	3 cut(s)	99, 197, 464
TspDTI	ATGAA	7 cut(s)	42, 48, 54, 275, 333, 761, 1023
TspRI	CASTG	2 cut(s)	108, 392
VpaK11BI	GGWCC	3 cut(s)	766, 1139, 1199
XagI	CCTNNNNNAGG	2 cut(s)	375, 581
XapI	RAATTY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	1297
XmnI	GAANNNNTTC	2 cut(s)	519, 834
XspI	CTAG	4 cut(s)	524, 578, 747, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.