Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

42798070 .. 42798489

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATTGTAGGCCTTTGGAAATAACGGTGTTCAGCGCAAATGACATCAAGGGCGTGAACATGTTCTCCAAGATGGATGTCTACGCCGTCGTCTCCGTCTCCGGTAACGGCGTCAGGAAGCAGAAGCTCCGCACCCCCATCCACAAAGACGCAGACACCAACCCCAAATGGAACCACACCCTTAAGTTCACCCTCGACAACTCCGTCCTCGACCGCCTCCAAATCAAAATCAAGCTCATCTGTGACCGCACCTTCGGCGAGACCAAGATCGGAAAGGTCGTCGTTCTGGTCAAGGACCTCCTGCAAAACGAGAAGAACGACAAGCACGTGACCTATCCGGTCATCACTGCCAAGGGGAGACCCAAAGGCAACGAGATGAGAACGACGATGGCGACGGAGTCGCAGATGATGGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

9.52

Isoelectric Point (pI)

20.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 108	8.8e-16	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	3 cut(s)	130, 214, 247
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	60
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	127, 235
AluI	AGCT	2 cut(s)	127, 235
Alw26I	GTCTC	4 cut(s)	97, 103, 254, 352
AoxI	GGCC	2 cut(s)	11, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	295
BbrPI	CACGTG	1 cut(s)	328
BccI	CCATC	4 cut(s)	67, 146, 382, 403
BceAI	ACGGC	2 cut(s)	71, 124
BcoDI	GTCTC	4 cut(s)	97, 103, 254, 352
BfaI	CTAG	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	2 cut(s)	254, 352
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	2 cut(s)	101, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	82, 138
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	13, 416
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	102, 338
BsmAI	GTCTC	4 cut(s)	97, 103, 254, 352
BsmBI	CGTCTC	2 cut(s)	97, 103
BsnI	GGCC	2 cut(s)	13, 416
Bso31I	GGTCTC	2 cut(s)	254, 352
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	130, 214, 247
BspANI	GGCC	2 cut(s)	13, 416
BspLI	GGNNCC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	2 cut(s)	254, 352
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	82, 138
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	4 cut(s)	97, 103, 254, 352
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	13, 416
BtsCI	GGATG	2 cut(s)	82, 138
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	100, 158
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	4 cut(s)	13, 127, 235, 416
CviKI_1	RGCY	4 cut(s)	13, 127, 235, 416
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	2 cut(s)	13, 416
Eco31I	GGTCTC	2 cut(s)	254, 352
Eco47I	GGWCC	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	2 cut(s)	97, 103
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	2 cut(s)	89, 125
FspBI	CTAG	1 cut(s)	418
GlaI	GCGC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	13, 416
HapII	CCGG	2 cut(s)	102, 338
HgaI	GACGC	2 cut(s)	100, 158
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	2 cut(s)	102, 338
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	58, 82, 189
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	3 cut(s)	58, 82, 189
Hpy99I	CGWCG	4 cut(s)	92, 284, 388, 397
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	100, 115, 272, 314, 351
MaeI	CTAG	1 cut(s)	418
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	104, 242, 328
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	5 cut(s)	203, 218, 227, 308, 406
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	102, 338
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	242, 328
NspI	RCATGY	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	13, 416
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	5 cut(s)	201, 276, 315, 324, 389
PdmI	GAANNNNTTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	406
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	407
SetI	ASST	7 cut(s)	129, 237, 254, 279, 300, 330, 335
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SseBI	AGGCCT	2 cut(s)	13, 416
SsiI	CCGC	3 cut(s)	130, 214, 247
SspMI	CTAG	1 cut(s)	418
StuI	AGGCCT	2 cut(s)	13, 416
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	195, 210
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	242, 328
Tsp45I	GTSAC	2 cut(s)	242, 328
TspGWI	ACGGA	3 cut(s)	85, 193, 410
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	295
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.