Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Forward (+)

54477442 .. 54482691

Gene Structure 5250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009554

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGTCTTCTCTTTCTTCAATTCCTCTCTCACTCTCCATCGTTTCCTCATCATCATCTTCATCATCATCTTCATCTAAAGGAACACAAGGTAAACCCAACTCAAAGTCACTGAAGCTTAGAGAGGACTGGAGACAACGCTCCAAACCCATTCCTCCTGGTGGCACTTACCCAGCTAAAGACCATTGCAGTCGTTGCGGGTTGTGTGACACCTATTACATTGCCCATGTCAAGGAAGCCTGTGCTTTTTTGGGAGATGGGATGTCCAAGATTGAAGGTTTGGAGCCTATAGTTCATGGTAGAGGGAGAAAGCCAGATTCTTTAGATGAAATGCACTTGGGTGTCTATGAGGAGTTGTTGTATGCCCGTAAGGTCAAGCCTGTTGAAGGTGCTCAGTGGACAGGGATAGTAACAACTATTGCAATAGAAATGCTAAAATCAGGCATGGTGGAAGCTGTCATTTGTGTACAGAGTGACCCAGAGGACAGATTTTCTCCAAGGCCTGTACTAGCAAGGACACCGGAAGAAGTTCTAGCTGCTAAAGGTGTCAAGCCGACATTATCACCTAATCTTAATACCCTTGCCCTAGTTGAGGCTGCTGGTGTAAAGAAACTTCTATTCTGTGGTGTCGGTTGCCAGGTGCAAGCATTAAGGTCTGTGGAGCACCATCTGAATTTGGAGAAGCTGTATGTGTTGGGCACAAATTGCGTGGATAATGGGACTCGTGAAGGGCTTGATAAGTTTCTAAAGGCTGCTAGTACTGAACCAGAGACGGTTCTTCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGCCATATTGAAGAGGTTCCTTATTTCTCTCTGCCGGCAAATGACTTAGTTGATGTAATTGCTCCTTCTTGTTATAGCTGCTTTGACTACACAAATGCTTTGGCGGATTTAGTGGTTGGATACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACACAACATCCTCAGTATGTTACAGTAAGAAATGAACGTGGAAGAGAGATGCTCAGTCTGGTTGAAAAACATTTGGAGATTACTCCTACGACTAGTAGTGGTGATCGACGACCATTTGTTTTGGAGACAGTTAAGGCAGATGATACTGCTAAGATGGGGAGGGGTCCTGATCCTGCACCAAAGTTCATTGGCAATTTGATTGCTTTCTTGCTAAACTTGGTTGGTCCCAAGGGGCTGGAATTTGCTCGATATTCACTTGATTACCATACCATCCGGAACTATCTGCATATTAACCGAACATGGGGAAAAGAAAGAGCTGATCGACATATGCCTTCGTATGCAAAGAAAATTGTGGATAGTTACAACAAGAATGGTGAAATTGATAAGATGCTTTCCGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

462

Amino Acids

50.95

Weight (kDa)

7.95

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FrhB_FdhB_N	PF04422	119 - 193	4.4e-25	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
FrhB_FdhB_C	PF04432	202 - 356	4e-27	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1254
AciI	CCGC	3 cut(s)	195, 929, 1377
AclWI	GGATC	1 cut(s)	1145
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	670, 1220
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	3 cut(s)	465, 504, 757
AfiI	CCNNNNNNNGG	5 cut(s)	158, 229, 383, 589, 1282
AgsI	TTSAA	6 cut(s)	18, 272, 383, 814, 836, 1046
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	2 cut(s)	154, 633
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	7 cut(s)	115, 173, 452, 533, 682, 903, 1298
AluI	AGCT	7 cut(s)	115, 173, 452, 533, 682, 903, 1298
Alw21I	GWGCWC	2 cut(s)	391, 663
Alw26I	GTCTC	3 cut(s)	124, 761, 1100
AlwI	GGATC	1 cut(s)	1145
Aor13HI	TCCGGA	1 cut(s)	1254
AoxI	GGCC	2 cut(s)	497, 826
ApeKI	GCWGC	4 cut(s)	533, 593, 749, 903
ApoI	RAATTY	2 cut(s)	670, 1220
Asp700I	GAANNNNTTC	2 cut(s)	525, 840
AspS9I	GGNCC	2 cut(s)	1145, 1205
AsuHPI	GGTGA	3 cut(s)	552, 1094, 1367
AvaII	GGWCC	2 cut(s)	1145, 1205
BaeGI	GKGCMC	1 cut(s)	698
BaeI	ACNNNNGTAYC	2 cut(s)	937, 970
BalI	TGGCCA	1 cut(s)	828
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	391, 663
BbvI	GCAGC	4 cut(s)	520, 580, 736, 890
BccI	CCATC	6 cut(s)	44, 248, 672, 818, 1129, 1259
BciT130I	CCWGG	2 cut(s)	156, 635
BciVI	GTATCC	1 cut(s)	938
BcoDI	GTCTC	3 cut(s)	124, 761, 1100
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	5 cut(s)	506, 530, 584, 753, 1074
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	938
BisI	GCNGC	4 cut(s)	534, 594, 750, 904
BlsI	GCNGC	4 cut(s)	535, 595, 751, 905
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	2 cut(s)	156, 635
Bme18I	GGWCC	2 cut(s)	1145, 1205
BmgT120I	GGNCC	2 cut(s)	1145, 1205
BmiI	GGNNCC	4 cut(s)	282, 843, 1146, 1207
BmrFI	CCNGG	2 cut(s)	156, 635
BmsI	GCATC	2 cut(s)	1020, 1359
BplI	GAGNNNNNCTC	2 cut(s)	1017, 1049
BpmI	CTGGAG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	494, 1209
BsaWI	WCCGGW	2 cut(s)	517, 1254
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 668, 698
Bsc4I	CCNNNNNNNGG	5 cut(s)	158, 229, 383, 589, 1282
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	2 cut(s)	181, 216
BseAI	TCCGGA	1 cut(s)	1254
BseBI	CCWGG	2 cut(s)	156, 635
BseDI	CCNNGG	2 cut(s)	494, 1209
BseGI	GGATG	4 cut(s)	264, 829, 988, 1251
BseLI	CCNNNNNNNGG	5 cut(s)	158, 229, 383, 589, 1282
BseMI	GCAATG	2 cut(s)	181, 216
BseMII	CTCAG	3 cut(s)	404, 1007, 1048
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	520, 580, 736, 890
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	1140
BshFI	GGCC	2 cut(s)	499, 828
BsiHKAI	GWGCWC	2 cut(s)	391, 663
BsiSI	CCGG	3 cut(s)	518, 860, 1255
BslFI	GGGAC	2 cut(s)	730, 1191
BslI	CCNNNNNNNGG	5 cut(s)	158, 229, 383, 589, 1282
BsmAI	GTCTC	3 cut(s)	124, 761, 1100
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	2 cut(s)	730, 1191
BsnI	GGCC	2 cut(s)	499, 828
Bsp1286I	GDGCHC	3 cut(s)	391, 663, 698
Bsp13I	TCCGGA	1 cut(s)	1254
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	3 cut(s)	1084, 1150, 1300
BspACI	CCGC	3 cut(s)	195, 929, 1377
BspANI	GGCC	2 cut(s)	499, 828
BspCNI	CTCAG	3 cut(s)	403, 1006, 1047
BspEI	TCCGGA	1 cut(s)	1254
BspLI	GGNNCC	4 cut(s)	282, 843, 1146, 1207
BspPI	GGATC	1 cut(s)	1145
BsrDI	GCAATG	2 cut(s)	181, 216
BsrFI	RCCGGY	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	2 cut(s)	494, 1209
BssMI	GATC	3 cut(s)	1084, 1150, 1300
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	494, 1209
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	156, 635
Bst4CI	ACNGT	3 cut(s)	772, 1006, 1111
Bst6I	CTCTTC	2 cut(s)	831, 1018
BstAPI	GCANNNNNTGC	2 cut(s)	192, 702
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	642, 861
BstDEI	CTNAG	6 cut(s)	116, 390, 871, 993, 1034, 1131
BstENI	CCTNNNNNAGG	2 cut(s)	381, 587
BstF5I	GGATG	4 cut(s)	264, 829, 988, 1251
BstKTI	GATC	3 cut(s)	1087, 1153, 1303
BstMAI	GTCTC	3 cut(s)	124, 761, 1100
BstMBI	GATC	3 cut(s)	1084, 1150, 1300
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 702
BstNI	CCWGG	2 cut(s)	156, 635
BstSCI	CCNGG	2 cut(s)	154, 633
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	4 cut(s)	520, 580, 736, 890
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	499, 828
BtsCI	GGATG	4 cut(s)	264, 829, 988, 1251
BtsIMutI	CAGTG	2 cut(s)	107, 398
Cac8I	GCNNGC	2 cut(s)	642, 861
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	1145, 1205
Csp6I	GTAC	3 cut(s)	464, 503, 756
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviAII	CATG	6 cut(s)	224, 293, 442, 949, 979, 1281
CviQI	GTAC	3 cut(s)	464, 503, 756
DdeI	CTNAG	6 cut(s)	116, 390, 871, 993, 1034, 1131
DpnI	GATC	3 cut(s)	1086, 1152, 1302
DpnII	GATC	3 cut(s)	1084, 1150, 1300
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	831, 1018
EarI	CTCTTC	2 cut(s)	831, 1018
EciI	GGCGGA	2 cut(s)	944, 1366
Eco130I	CCWWGG	2 cut(s)	494, 1209
Eco147I	AGGCCT	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	1145, 1205
Eco57I	CTGAAG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	2 cut(s)	381, 587
EcoO109I	RGGNCCY	1 cut(s)	1145
EcoRII	CCWGG	2 cut(s)	154, 633
EcoT14I	CCWWGG	2 cut(s)	494, 1209
ErhI	CCWWGG	2 cut(s)	494, 1209
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	6 cut(s)	227, 296, 445, 952, 982, 1284
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	2 cut(s)	730, 1191
FatI	CATG	6 cut(s)	223, 292, 441, 948, 978, 1280
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	1308
Fnu4HI	GCNGC	4 cut(s)	534, 594, 750, 904
FokI	GGATG	4 cut(s)	271, 836, 975, 1238
Fsp4HI	GCNGC	4 cut(s)	534, 594, 750, 904
FspBI	CTAG	5 cut(s)	506, 530, 584, 753, 1074
GluI	GCNGC	4 cut(s)	534, 594, 750, 904
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	499, 828
HapII	CCGG	3 cut(s)	518, 860, 1255
Hin1II	CATG	6 cut(s)	227, 296, 445, 952, 982, 1284
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	314, 718, 972
HpaII	CCGG	3 cut(s)	518, 860, 1255
HphI	GGTGA	3 cut(s)	552, 1094, 1367
Hpy166II	GTNNAC	4 cut(s)	92, 396, 464, 808
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	4 cut(s)	722, 969, 1148, 1255
Hpy8I	GTNNAC	4 cut(s)	92, 396, 464, 808
Hpy99I	CGWCG	1 cut(s)	1092
HpyAV	CCTTC	5 cut(s)	266, 377, 719, 900, 1323
HpyCH4III	ACNGT	3 cut(s)	772, 1006, 1111
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	8 cut(s)	186, 331, 419, 640, 793, 1157, 1267, 1322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 702
HpyF3I	CTNAG	6 cut(s)	116, 390, 871, 993, 1034, 1131
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	6 cut(s)	227, 296, 445, 952, 982, 1284
Kpn2I	TCCGGA	1 cut(s)	1254
KroI	GCCGGC	1 cut(s)	859
KroNI	GCCGGC	1 cut(s)	861
Kzo9I	GATC	3 cut(s)	1084, 1150, 1300
LmnI	GCTCC	4 cut(s)	143, 280, 658, 892
Lsp1109I	GCAGC	4 cut(s)	520, 580, 736, 890
LweI	GCATC	2 cut(s)	1020, 1359
MaeI	CTAG	5 cut(s)	506, 530, 584, 753, 1074
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	6 cut(s)	105, 203, 406, 470, 1000, 1340
MalI	GATC	3 cut(s)	1086, 1152, 1302
MboI	GATC	3 cut(s)	1084, 1150, 1300
MboII	GAAGA	7 cut(s)	6, 48, 60, 533, 767, 848, 1035
MhlI	GDGCHC	3 cut(s)	391, 663, 698
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	8 cut(s)	18, 670, 700, 882, 1174, 1220, 1329, 1359
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	1 cut(s)	922
Mox20I	TGGCCA	1 cut(s)	828
MroI	TCCGGA	1 cut(s)	1254
MroNI	GCCGGC	1 cut(s)	859
MroXI	GAANNNNTTC	2 cut(s)	525, 840
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	4 cut(s)	570, 647, 1113, 1272
MslI	CAYNNNNRTG	3 cut(s)	336, 822, 953
Msp20I	TGGCCA	1 cut(s)	828
MspI	CCGG	3 cut(s)	518, 860, 1255
MspR9I	CCNGG	2 cut(s)	156, 635
MvaI	CCWGG	2 cut(s)	156, 635
MwoI	GCNNNNNNNGC	2 cut(s)	192, 702
NaeI	GCCGGC	1 cut(s)	861
NdeI	CATATG	1 cut(s)	1308
NdeII	GATC	3 cut(s)	1084, 1150, 1300
NgoMIV	GCCGGC	1 cut(s)	859
NlaIII	CATG	6 cut(s)	227, 296, 445, 952, 982, 1284
NlaIV	GGNNCC	4 cut(s)	282, 843, 1146, 1207
NmuCI	GTSAC	3 cut(s)	105, 203, 470
OliI	CACNNNNGTG	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	861
PdmI	GAANNNNTTC	2 cut(s)	525, 840
PfeI	GAWTC	2 cut(s)	314, 972
PkrI	GCNGC	4 cut(s)	535, 595, 751, 905
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	1145
Psp5II	RGGWCCY	1 cut(s)	1145
Psp6I	CCWGG	2 cut(s)	154, 633
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	2 cut(s)	154, 633
PspN4I	GGNNCC	4 cut(s)	282, 843, 1146, 1207
PspPI	GGNCC	2 cut(s)	1145, 1205
PspPPI	RGGWCCY	1 cut(s)	1145
RsaI	GTAC	3 cut(s)	465, 504, 757
RsaNI	GTAC	3 cut(s)	464, 503, 756
RseI	CAYNNNNRTG	3 cut(s)	336, 822, 953
SaqAI	TTAA	4 cut(s)	570, 647, 1113, 1272
SatI	GCNGC	4 cut(s)	534, 594, 750, 904
Sau3AI	GATC	3 cut(s)	1084, 1150, 1300
Sau96I	GGNCC	2 cut(s)	1145, 1205
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	2 cut(s)	156, 635
SduI	GDGCHC	3 cut(s)	391, 663, 698
SfaNI	GCATC	2 cut(s)	1020, 1359
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	1145, 1205
SmiMI	CAYNNNNRTG	3 cut(s)	336, 822, 953
SpeI	ACTAGT	1 cut(s)	1073
Sse9I	AATT	8 cut(s)	18, 670, 700, 882, 1174, 1220, 1329, 1359
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	3 cut(s)	195, 929, 1377
SspI	AATATT	1 cut(s)	965
SspMI	CTAG	5 cut(s)	506, 530, 584, 753, 1074
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	154, 633
StyI	CCWWGG	2 cut(s)	494, 1209
TaaI	ACNGT	3 cut(s)	772, 1006, 1111
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	3 cut(s)	1087, 1228, 1303
TasI	AATT	8 cut(s)	18, 670, 700, 882, 1174, 1220, 1329, 1359
TatI	WGTACW	3 cut(s)	463, 502, 755
TfiI	GAWTC	2 cut(s)	314, 972
Tru1I	TTAA	4 cut(s)	570, 647, 1113, 1272
Tru9I	TTAA	4 cut(s)	570, 647, 1113, 1272
TscAI	CASTG	2 cut(s)	114, 398
TseFI	GTSAC	3 cut(s)	105, 203, 470
TseI	GCWGC	4 cut(s)	533, 593, 749, 903
Tsp45I	GTSAC	3 cut(s)	105, 203, 470
TspDTI	ATGAA	7 cut(s)	48, 60, 281, 339, 767, 1029, 1156
TspRI	CASTG	2 cut(s)	114, 398
VpaK11BI	GGWCC	2 cut(s)	1145, 1205
XagI	CCTNNNNNAGG	2 cut(s)	381, 587
XapI	RAATTY	2 cut(s)	670, 1220
XmnI	GAANNNNTTC	2 cut(s)	525, 840
XspI	CTAG	5 cut(s)	506, 530, 584, 753, 1074
ZrmI	AGTACT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.