Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000234.1

Orthogroup ID

OG0006863

Physical Location & Seq

Genomic Coordinates Reverse (-)

36684 .. 41941

Gene Structure 5258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000234.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgtattctctttcttcaattcctctcccactctccatcgtttcctcttcatcttcatcttcatcttcatcttcatctaaaggaacacaaggtaaacccaactcaaagtcactgaagcttagagaggactggagacaacgctccaaacccattccccctggtggcacttacccagctaaagaccattgcagtcgttgcgggttgtgtgacacctattacattgcccatgtcaaggaagcctgtgcttttttgggagacgggatgtccaagattgaaggtttggaacctgtagttcatggtagagggagaaagccagattctttagatgaaatgcacttgggtgtctatgaggagttgttgtatgcccgtaaggtcaagcctgttgaaggtgctcagtggacagggatagtaacaactattgcaatagaaatgctaaaatcaggcatggtggaagctgtcatttgtgtacagagtgacccagaggacagattttctccaaggcctgtgctagcaaggacaccggaagaagttctagctgctaaaggtgtcaagccgacattatcacctaatcttaatacccttgccctagttgaggctgcaggtgtaaggaaacttctattctgtggtgtcggttgccaggtgcaagcattaaggtctgtagagcaccatctgaatttggagaagctgtatgtgttgggcacaaattgcgtggataatgggactcgtgaagggcttgataagtttctaaaggctgctagtagtgaaccagagacggttcttcattatgagtttatgcaagattacaaggttcacttgaagcatttggatggtcatattgaagaggttccttatttctctctgccggcaaatgacttagttgatgtaattgctccttcttgttatagctgctttgactacacaaatggtttggcggatttagtggttggatacatgggtgtgccaaaatattctggaatcagcatgacacaacatcctcagtatgttacggtaagaaatgaacgtggaagagagatgctcagtctggttgaaaaacatttggagattactcctacgactagtagtggtgatcgccgaccatttgtattggagacagttaaggcagatgatactgctaagatggggaggggtcctgatcctgcaccaaagttcattggcaatttgattgctttcttgctaaacttggttggtcccagggggctggaatttgctcgatattcacttgattaccataccatccggaactatctgcatattaaccgaacatggggaaaagaaagagctgatcgacatatgccttcgtatgcaaagaaaattgtggatagttacaacaagaatggtgaaattgataagatgttttccgccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0016491 GO:0016725 GO:0033013 GO:0033354 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0052592 GO:0055114 GO:0071704 GO:0090415 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

FrhB_FdhB_C FrhB_FdhB_N

Protein Analysis

462

Amino Acids

51.17

Weight (kDa)

7.95

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04620
fragaria_vesca	FvH4_4g05310 FvH4_4g05310 FvH4_4g05310 FvH4_4g05310
malus_domestica	MD13G1227100.v1.1
prunus_persica	Prupe.1G054400_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1 Prupe.1G054600_v2.0.a1
pyrus_communis	pycom13g20010
rosa_chinensis	RchiOBHm_Chr4g0396281
rosa_laevigata	RLG00000009554
rosa_multiflora	Rmu_sc0002578.1_g000007 Rmu_ssc0000234.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341120
rosa_rugosa	Rorug03G0350500 Rorug03G0350600.1
rosa_samantha	Rh4BG066300 Rh4CG073100 Rh4DG063100
rosa_wichuraiana	Rw4G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	590
AccIII	TCCGGA	1 cut(s)	1257
AciI	CCGC	3 cut(s)	198, 932, 1380
AclWI	GGATC	1 cut(s)	1148
AcsI	RAATTY	2 cut(s)	673, 1223
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	5 cut(s)	161, 232, 386, 592, 1285
AgsI	TTSAA	6 cut(s)	18, 275, 386, 817, 839, 1049
AhdI	GACNNNNNGTC	1 cut(s)	262
AhlI	ACTAGT	1 cut(s)	1076
AjnI	CCWGG	3 cut(s)	157, 636, 1211
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	7 cut(s)	118, 176, 455, 536, 685, 906, 1301
AluI	AGCT	7 cut(s)	118, 176, 455, 536, 685, 906, 1301
Alw21I	GWGCWC	2 cut(s)	394, 666
Alw26I	GTCTC	4 cut(s)	127, 249, 764, 1103
AlwI	GGATC	1 cut(s)	1148
Aor13HI	TCCGGA	1 cut(s)	1257
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	4 cut(s)	536, 596, 752, 906
ApoI	RAATTY	2 cut(s)	673, 1223
Asp700I	GAANNNNTTC	2 cut(s)	528, 843
AspS9I	GGNCC	2 cut(s)	1148, 1208
AsuHPI	GGTGA	3 cut(s)	555, 1097, 1370
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	2 cut(s)	1148, 1208
BaeGI	GKGCMC	1 cut(s)	701
BaeI	ACNNNNGTAYC	2 cut(s)	940, 973
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BauI	CACGAG	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	394, 666
BbvI	GCAGC	4 cut(s)	523, 583, 739, 893
BccI	CCATC	5 cut(s)	44, 675, 821, 1132, 1262
BciT130I	CCWGG	3 cut(s)	159, 638, 1213
BciVI	GTATCC	1 cut(s)	941
BcoDI	GTCTC	4 cut(s)	127, 249, 764, 1103
BcuI	ACTAGT	1 cut(s)	1076
BfaI	CTAG	5 cut(s)	509, 533, 587, 756, 1077
BfmI	CTRYAG	3 cut(s)	288, 597, 657
BfuAI	ACCTGC	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	941
BisI	GCNGC	4 cut(s)	537, 597, 753, 907
BlsI	GCNGC	4 cut(s)	538, 598, 754, 908
Bme1390I	CCNGG	3 cut(s)	159, 638, 1213
Bme18I	GGWCC	2 cut(s)	1148, 1208
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	1148, 1208
BmiI	GGNNCC	4 cut(s)	285, 846, 1149, 1210
BmrFI	CCNGG	3 cut(s)	159, 638, 1213
BmsI	GCATC	1 cut(s)	1023
BmtI	GCTAGC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	1020, 1052
BpmI	CTGGAG	1 cut(s)	151
BsaJI	CCNNGG	4 cut(s)	157, 497, 1211, 1212
BsaWI	WCCGGW	2 cut(s)	520, 1257
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 671, 701
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 232, 386, 592, 1285
Bse118I	RCCGGY	1 cut(s)	862
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	184, 219
BseAI	TCCGGA	1 cut(s)	1257
BseBI	CCWGG	3 cut(s)	159, 638, 1213
BseDI	CCNNGG	4 cut(s)	157, 497, 1211, 1212
BseGI	GGATG	4 cut(s)	267, 832, 991, 1254
BseLI	CCNNNNNNNGG	5 cut(s)	161, 232, 386, 592, 1285
BseMI	GCAATG	2 cut(s)	184, 219
BseMII	CTCAG	3 cut(s)	407, 1010, 1051
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	4 cut(s)	523, 583, 739, 893
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	1143
BshFI	GGCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	394, 666
BsiSI	CCGG	3 cut(s)	521, 863, 1258
BslFI	GGGAC	2 cut(s)	733, 1194
BslI	CCNNNNNNNGG	5 cut(s)	161, 232, 386, 592, 1285
BsmAI	GTCTC	4 cut(s)	127, 249, 764, 1103
BsmBI	CGTCTC	2 cut(s)	249, 764
BsmFI	GGGAC	2 cut(s)	733, 1194
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	394, 666, 701
Bsp13I	TCCGGA	1 cut(s)	1257
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	3 cut(s)	1087, 1153, 1303
BspACI	CCGC	3 cut(s)	198, 932, 1380
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	3 cut(s)	406, 1009, 1050
BspEI	TCCGGA	1 cut(s)	1257
BspLI	GGNNCC	4 cut(s)	285, 846, 1149, 1210
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	590
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	1148
BsrDI	GCAATG	2 cut(s)	184, 219
BsrFI	RCCGGY	1 cut(s)	862
BsrGI	TGTACA	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	4 cut(s)	157, 497, 1211, 1212
BssMI	GATC	3 cut(s)	1087, 1153, 1303
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	3 cut(s)	159, 638, 1213
Bst4CI	ACNGT	3 cut(s)	775, 1009, 1114
Bst6I	CTCTTC	3 cut(s)	52, 834, 1021
BstAPI	GCANNNNNTGC	2 cut(s)	195, 705
BstAUI	TGTACA	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	510, 645, 864
BstDEI	CTNAG	6 cut(s)	119, 393, 874, 996, 1037, 1134
BstENI	CCTNNNNNAGG	2 cut(s)	384, 590
BstF5I	GGATG	4 cut(s)	267, 832, 991, 1254
BstKTI	GATC	3 cut(s)	1090, 1156, 1306
BstMAI	GTCTC	4 cut(s)	127, 249, 764, 1103
BstMBI	GATC	3 cut(s)	1087, 1153, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 705
BstNI	CCWGG	3 cut(s)	159, 638, 1213
BstSCI	CCNGG	3 cut(s)	157, 636, 1211
BstSFI	CTRYAG	3 cut(s)	288, 597, 657
BstSLI	GKGCMC	1 cut(s)	701
BstV1I	GCAGC	4 cut(s)	523, 583, 739, 893
BstXI	CCANNNNNNTGG	1 cut(s)	1219
BsuI	GTATCC	1 cut(s)	941
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	4 cut(s)	267, 832, 991, 1254
BtsIMutI	CAGTG	2 cut(s)	110, 401
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	3 cut(s)	510, 645, 864
Cfr10I	RCCGGY	1 cut(s)	862
Cfr13I	GGNCC	2 cut(s)	1148, 1208
Csp6I	GTAC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	227, 296, 445, 952, 982, 1284
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	6 cut(s)	119, 393, 874, 996, 1037, 1134
DpnI	GATC	3 cut(s)	1089, 1155, 1305
DpnII	GATC	3 cut(s)	1087, 1153, 1303
DriI	GACNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	3 cut(s)	52, 834, 1021
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	3 cut(s)	52, 834, 1021
EciI	GGCGGA	2 cut(s)	947, 1369
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	1148, 1208
Eco57I	CTGAAG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	2 cut(s)	384, 590
EcoO109I	RGGNCCY	1 cut(s)	1148
EcoRII	CCWGG	3 cut(s)	157, 636, 1211
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
Esp3I	CGTCTC	2 cut(s)	249, 764
FaeI	CATG	6 cut(s)	230, 299, 448, 955, 985, 1287
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	733, 1194
FatI	CATG	6 cut(s)	226, 295, 444, 951, 981, 1283
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	1311
Fnu4HI	GCNGC	4 cut(s)	537, 597, 753, 907
FokI	GGATG	4 cut(s)	274, 839, 978, 1241
Fsp4HI	GCNGC	4 cut(s)	537, 597, 753, 907
FspBI	CTAG	5 cut(s)	509, 533, 587, 756, 1077
GluI	GCNGC	4 cut(s)	537, 597, 753, 907
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	3 cut(s)	521, 863, 1258
Hin1II	CATG	6 cut(s)	230, 299, 448, 955, 985, 1287
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	317, 721, 975
HpaII	CCGG	3 cut(s)	521, 863, 1258
HphI	GGTGA	3 cut(s)	555, 1097, 1370
Hpy166II	GTNNAC	5 cut(s)	95, 399, 467, 764, 811
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	4 cut(s)	725, 972, 1151, 1258
Hpy8I	GTNNAC	5 cut(s)	95, 399, 467, 764, 811
HpyAV	CCTTC	5 cut(s)	269, 380, 722, 903, 1326
HpyCH4III	ACNGT	3 cut(s)	775, 1009, 1114
HpyCH4IV	ACGT	1 cut(s)	1021
HpyCH4V	TGCA	9 cut(s)	189, 334, 422, 599, 643, 796, 1160, 1270, 1325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 705
HpyF3I	CTNAG	6 cut(s)	119, 393, 874, 996, 1037, 1134
HpySE526I	ACGT	1 cut(s)	1021
Hsp92II	CATG	6 cut(s)	230, 299, 448, 955, 985, 1287
Kpn2I	TCCGGA	1 cut(s)	1257
KroI	GCCGGC	1 cut(s)	862
KroNI	GCCGGC	1 cut(s)	864
Kzo9I	GATC	3 cut(s)	1087, 1153, 1303
LmnI	GCTCC	2 cut(s)	146, 895
Lsp1109I	GCAGC	4 cut(s)	523, 583, 739, 893
LweI	GCATC	1 cut(s)	1023
MaeI	CTAG	5 cut(s)	509, 533, 587, 756, 1077
MaeII	ACGT	1 cut(s)	1021
MaeIII	GTNAC	6 cut(s)	108, 206, 409, 473, 1003, 1343
MalI	GATC	3 cut(s)	1089, 1155, 1305
MboI	GATC	3 cut(s)	1087, 1153, 1303
MhlI	GDGCHC	3 cut(s)	394, 666, 701
MluCI	AATT	8 cut(s)	18, 673, 703, 885, 1177, 1223, 1332, 1362
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	1 cut(s)	925
MroI	TCCGGA	1 cut(s)	1257
MroNI	GCCGGC	1 cut(s)	862
MroXI	GAANNNNTTC	2 cut(s)	528, 843
MseI	TTAA	4 cut(s)	573, 650, 1116, 1275
MslI	CAYNNNNRTG	3 cut(s)	339, 825, 956
MspI	CCGG	3 cut(s)	521, 863, 1258
MspR9I	CCNGG	3 cut(s)	159, 638, 1213
MvaI	CCWGG	3 cut(s)	159, 638, 1213
MwoI	GCNNNNNNNGC	2 cut(s)	195, 705
NaeI	GCCGGC	1 cut(s)	864
NdeI	CATATG	1 cut(s)	1311
NdeII	GATC	3 cut(s)	1087, 1153, 1303
NgoMIV	GCCGGC	1 cut(s)	862
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	6 cut(s)	230, 299, 448, 955, 985, 1287
NlaIV	GGNNCC	4 cut(s)	285, 846, 1149, 1210
NmuCI	GTSAC	3 cut(s)	108, 206, 473
OliI	CACNNNNGTG	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	590
PasI	CCCWGGG	1 cut(s)	1212
PceI	AGGCCT	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	864
PdmI	GAANNNNTTC	2 cut(s)	528, 843
PfeI	GAWTC	2 cut(s)	317, 975
PkrI	GCNGC	4 cut(s)	538, 598, 754, 908
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	1148
Psp5II	RGGWCCY	1 cut(s)	1148
Psp6I	CCWGG	3 cut(s)	157, 636, 1211
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	157, 636, 1211
PspN4I	GGNNCC	4 cut(s)	285, 846, 1149, 1210
PspPI	GGNCC	2 cut(s)	1148, 1208
PspPPI	RGGWCCY	1 cut(s)	1148
PstI	CTGCAG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	3 cut(s)	339, 825, 956
SaqAI	TTAA	4 cut(s)	573, 650, 1116, 1275
SatI	GCNGC	4 cut(s)	537, 597, 753, 907
Sau3AI	GATC	3 cut(s)	1087, 1153, 1303
Sau96I	GGNCC	2 cut(s)	1148, 1208
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	3 cut(s)	159, 638, 1213
SduI	GDGCHC	3 cut(s)	394, 666, 701
SfaNI	GCATC	1 cut(s)	1023
SfcI	CTRYAG	3 cut(s)	288, 597, 657
SinI	GGWCC	2 cut(s)	1148, 1208
SmiMI	CAYNNNNRTG	3 cut(s)	339, 825, 956
SpeI	ACTAGT	1 cut(s)	1076
Sse9I	AATT	8 cut(s)	18, 673, 703, 885, 1177, 1223, 1332, 1362
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	3 cut(s)	198, 932, 1380
SspI	AATATT	1 cut(s)	968
SspMI	CTAG	5 cut(s)	509, 533, 587, 756, 1077
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	3 cut(s)	157, 636, 1211
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	3 cut(s)	775, 1009, 1114
TaiI	ACGT	1 cut(s)	1024
TaqI	TCGA	2 cut(s)	1231, 1306
TasI	AATT	8 cut(s)	18, 673, 703, 885, 1177, 1223, 1332, 1362
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	317, 975
Tru1I	TTAA	4 cut(s)	573, 650, 1116, 1275
Tru9I	TTAA	4 cut(s)	573, 650, 1116, 1275
TscAI	CASTG	2 cut(s)	117, 401
TseFI	GTSAC	3 cut(s)	108, 206, 473
TseI	GCWGC	4 cut(s)	536, 596, 752, 906
Tsp45I	GTSAC	3 cut(s)	108, 206, 473
TspRI	CASTG	2 cut(s)	117, 401
VpaK11BI	GGWCC	2 cut(s)	1148, 1208
XagI	CCTNNNNNAGG	2 cut(s)	384, 590
XapI	RAATTY	2 cut(s)	673, 1223
XmnI	GAANNNNTTC	2 cut(s)	528, 843
XspI	CTAG	5 cut(s)	509, 533, 587, 756, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.