Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g06190 |
| malus_domestica | MD13G1234500.v1.1 MD16G1239300.v1.1 |
| prunus_persica | Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1 |
| pyrus_communis | pycom13g20640 pycom16g20020 |
| rosa_chinensis | RchiOBHm_Chr4g0397771 |
| rosa_laevigata | RLG00000009414 |
| rosa_multiflora | Rmu_sc0004527.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00342570 |
| rosa_rugosa | Rorug04G0004100 Rorug04G0004100 Rorug04G0004200 |
| rosa_samantha | Rh4AG080600 Rh4BG078200 Rh4DG073600 |
| rosa_wichuraiana | Rw4G006600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2130 |
| AarI | CACCTGC | 1 cut(s) | 517 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2986 |
| Acc16I | TGCGCA | 1 cut(s) | 306 |
| Acc36I | ACCTGC | 2 cut(s) | 517, 1743 |
| AccB1I | GGYRCC | 3 cut(s) | 2077, 3032, 3043 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2489 |
| AccI | GTMKAC | 1 cut(s) | 1594 |
| AccII | CGCG | 1 cut(s) | 41 |
| AciI | CCGC | 8 cut(s) | 39, 113, 128, 134, 457, 1619, 1640, 2277 |
| AclWI | GGATC | 5 cut(s) | 983, 1238, 1251, 1389, 2819 |
| AcsI | RAATTY | 6 cut(s) | 213, 845, 1297, 1576, 1828, 2911 |
| AcuI | CTGAAG | 8 cut(s) | 954, 1117, 1667, 1904, 2520, 2544, 2628, 2868 |
| AcvI | CACGTG | 1 cut(s) | 145 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 148 |
| AfaI | GTAC | 6 cut(s) | 869, 956, 964, 1530, 3077, 3089 |
| AflIII | ACRYGT | 1 cut(s) | 2214 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 558, 2629 |
| AhlI | ACTAGT | 1 cut(s) | 3220 |
| AjiI | CACGTC | 1 cut(s) | 701 |
| AjnI | CCWGG | 6 cut(s) | 1248, 1258, 1568, 1665, 1989, 2197 |
| AleI | CACNNNNGTG | 1 cut(s) | 3083 |
| Alw21I | GWGCWC | 2 cut(s) | 2937, 3372 |
| Alw26I | GTCTC | 4 cut(s) | 257, 1078, 2025, 2029 |
| AlwI | GGATC | 5 cut(s) | 983, 1238, 1251, 1389, 2819 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1735, 1957 |
| Ama87I | CYCGRG | 2 cut(s) | 528, 2032 |
| AoxI | GGCC | 5 cut(s) | 99, 110, 163, 1261, 2650 |
| ApoI | RAATTY | 6 cut(s) | 213, 845, 1297, 1576, 1828, 2911 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1484, 1516, 1795, 1827 |
| AspA2I | CCTAGG | 2 cut(s) | 827, 1148 |
| AspLEI | GCGC | 4 cut(s) | 43, 107, 307, 3066 |
| AspS9I | GGNCC | 6 cut(s) | 110, 138, 552, 1993, 2330, 3196 |
| AsuC2I | CCSGG | 6 cut(s) | 86, 109, 529, 530, 1158, 2422 |
| AsuHPI | GGTGA | 6 cut(s) | 130, 259, 656, 1235, 1787, 2340 |
| AsuNHI | GCTAGC | 1 cut(s) | 1310 |
| AvaI | CYCGRG | 2 cut(s) | 528, 2032 |
| AvaII | GGWCC | 5 cut(s) | 138, 552, 1993, 2330, 3196 |
| AvrII | CCTAGG | 2 cut(s) | 827, 1148 |
| BaeGI | GKGCMC | 2 cut(s) | 3037, 3046 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 946, 979 |
| BamHI | GGATCC | 1 cut(s) | 1243 |
| BanI | GGYRCC | 3 cut(s) | 2077, 3032, 3043 |
| BanII | GRGCYC | 2 cut(s) | 2404, 2937 |
| BbrPI | CACGTG | 1 cut(s) | 145 |
| BbsI | GAAGAC | 2 cut(s) | 2433, 2625 |
| Bbv12I | GWGCWC | 2 cut(s) | 2937, 3372 |
| BbvCI | CCTCAGC | 1 cut(s) | 1461 |
| BccI | CCATC | 9 cut(s) | 600, 847, 993, 1390, 1540, 2278, 2341, 2491, 3338 |
| BceAI | ACGGC | 1 cut(s) | 444 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 161, 195, 284, 318 |
| BciT130I | CCWGG | 6 cut(s) | 1250, 1260, 1570, 1667, 1991, 2199 |
| BclI | TGATCA | 2 cut(s) | 1852, 2758 |
| BcnI | CCSGG | 6 cut(s) | 86, 109, 529, 530, 1158, 2422 |
| BcoDI | GTCTC | 4 cut(s) | 257, 1078, 2025, 2029 |
| BcuI | ACTAGT | 1 cut(s) | 3220 |
| BfmI | CTRYAG | 5 cut(s) | 465, 777, 1736, 2373, 3114 |
| BfuAI | ACCTGC | 2 cut(s) | 517, 1743 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3041 |
| BglII | AGATCT | 2 cut(s) | 361, 3110 |
| BlnI | CCTAGG | 2 cut(s) | 827, 1148 |
| BlpI | GCTNAGC | 1 cut(s) | 2925 |
| BmcAI | AGTACT | 1 cut(s) | 869 |
| Bme18I | GGWCC | 5 cut(s) | 138, 552, 1993, 2330, 3196 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 558, 2629 |
| BmeT110I | CYCGRG | 2 cut(s) | 528, 2032 |
| BmgBI | CACGTC | 1 cut(s) | 701 |
| BmgT120I | GGNCC | 6 cut(s) | 110, 138, 552, 1993, 2330, 3196 |
| BmiI | GGNNCC | 9 cut(s) | 139, 140, 611, 1245, 2079, 2331, 2555, 3034, 3045 |
| BmrI | ACTGGG | 1 cut(s) | 2950 |
| BmtI | GCTAGC | 1 cut(s) | 1314 |
| BmuI | ACTGGG | 1 cut(s) | 2950 |
| BpiI | GAAGAC | 2 cut(s) | 2433, 2625 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1444, 1476 |
| BpmI | CTGGAG | 3 cut(s) | 1585, 1967, 1973 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1461, 2751 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2925 |
| BpuEI | CTTGAG | 2 cut(s) | 144, 498 |
| BpuMI | CCSGG | 6 cut(s) | 86, 109, 529, 530, 1158, 2422 |
| BsaAI | YACGTR | 1 cut(s) | 145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 987 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaI | GGTCTC | 2 cut(s) | 1078, 2029 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 54, 84, 2545, 2575, 3196, 3226 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 130 |
| Bse1I | ACTGG | 4 cut(s) | 420, 1378, 2248, 2956 |
| Bse8I | GATNNNNATC | 1 cut(s) | 987 |
| BseBI | CCWGG | 6 cut(s) | 1250, 1260, 1570, 1667, 1991, 2199 |
| BseGI | GGATG | 9 cut(s) | 611, 673, 1045, 1287, 1520, 2089, 2574, 3250, 3349 |
| BseJI | GATNNNNATC | 1 cut(s) | 987 |
| BseNI | ACTGG | 4 cut(s) | 420, 1378, 2248, 2956 |
| BseRI | GAGGAG | 2 cut(s) | 1401, 3290 |
| BseSI | GKGCMC | 2 cut(s) | 3037, 3046 |
| BseYI | CCCAGC | 1 cut(s) | 1052 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BshFI | GGCC | 5 cut(s) | 101, 112, 165, 1263, 2652 |
| BshNI | GGYRCC | 3 cut(s) | 2077, 3032, 3043 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2937, 3372 |
| BsiHKCI | CYCGRG | 2 cut(s) | 528, 2032 |
| BsiSI | CCGG | 8 cut(s) | 11, 86, 108, 131, 392, 529, 1157, 2421 |
| BslFI | GGGAC | 8 cut(s) | 20, 151, 1104, 1600, 1621, 1642, 2244, 3298 |
| BsmAI | GTCTC | 4 cut(s) | 257, 1078, 2025, 2029 |
| BsmFI | GGGAC | 8 cut(s) | 20, 151, 1104, 1600, 1621, 1642, 2244, 3298 |
| BsmI | GAATGC | 1 cut(s) | 1167 |
| BsnI | GGCC | 5 cut(s) | 101, 112, 165, 1263, 2652 |
| Bso31I | GGTCTC | 2 cut(s) | 1078, 2029 |
| BsoBI | CYCGRG | 2 cut(s) | 528, 2032 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2404, 2937, 3037, 3046, 3372 |
| Bsp1407I | TGTACA | 1 cut(s) | 3087 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2925 |
| Bsp19I | CCATGG | 2 cut(s) | 1524, 3038 |
| BspACI | CCGC | 8 cut(s) | 39, 113, 128, 134, 457, 1619, 1640, 2277 |
| BspANI | GGCC | 5 cut(s) | 101, 112, 165, 1263, 2652 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspHI | TCATGA | 1 cut(s) | 3235 |
| BspLI | GGNNCC | 9 cut(s) | 139, 140, 611, 1245, 2079, 2331, 2555, 3034, 3045 |
| BspMAI | CTGCAG | 3 cut(s) | 469, 781, 1740 |
| BspMI | ACCTGC | 2 cut(s) | 517, 1743 |
| BspOI | GCTAGC | 1 cut(s) | 1314 |
| BspPI | GGATC | 5 cut(s) | 983, 1238, 1251, 1389, 2819 |
| BspT107I | GGYRCC | 3 cut(s) | 2077, 3032, 3043 |
| BspTNI | GGTCTC | 2 cut(s) | 1078, 2029 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 130 |
| BsrGI | TGTACA | 1 cut(s) | 3087 |
| BsrI | ACTGG | 4 cut(s) | 420, 1378, 2248, 2956 |
| BssAI | RCCGGY | 2 cut(s) | 10, 130 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 8 cut(s) | 827, 1148, 1214, 1524, 2469, 3038, 3081, 3269 |
| Bst2UI | CCWGG | 6 cut(s) | 1250, 1260, 1570, 1667, 1991, 2199 |
| Bst6I | CTCTTC | 2 cut(s) | 623, 930 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 785, 884, 1957, 2065, 2294 |
| BstAUI | TGTACA | 1 cut(s) | 3087 |
| BstBAI | YACGTR | 1 cut(s) | 145 |
| BstDSI | CCRYGG | 2 cut(s) | 1524, 3038 |
| BstEII | GGTNACC | 1 cut(s) | 1455 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1664 |
| BstF5I | GGATG | 9 cut(s) | 611, 673, 1045, 1287, 1520, 2089, 2574, 3250, 3349 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstHHI | GCGC | 4 cut(s) | 43, 107, 307, 3066 |
| BstMAI | GTCTC | 4 cut(s) | 257, 1078, 2025, 2029 |
| BstNI | CCWGG | 6 cut(s) | 1250, 1260, 1570, 1667, 1991, 2199 |
| BstNSI | RCATGY | 4 cut(s) | 278, 502, 1291, 2218 |
| BstPI | GGTNACC | 1 cut(s) | 1455 |
| BstSFI | CTRYAG | 5 cut(s) | 465, 777, 1736, 2373, 3114 |
| BstSLI | GKGCMC | 2 cut(s) | 3037, 3046 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV2I | GAAGAC | 2 cut(s) | 2433, 2625 |
| BstX2I | RGATCY | 4 cut(s) | 361, 1243, 1381, 3110 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2147, 2963 |
| BstYI | RGATCY | 4 cut(s) | 361, 1243, 1381, 3110 |
| BsuRI | GGCC | 5 cut(s) | 101, 112, 165, 1263, 2652 |
| BtgI | CCRYGG | 2 cut(s) | 1524, 3038 |
| BtrI | CACGTC | 1 cut(s) | 701 |
| BtsCI | GGATG | 9 cut(s) | 611, 673, 1045, 1287, 1520, 2089, 2574, 3250, 3349 |
| BtsI | GCAGTG | 2 cut(s) | 1844, 1955 |
| BtsIMutI | CAGTG | 9 cut(s) | 268, 427, 819, 985, 1283, 1844, 1955, 2544, 3372 |
| BveI | ACCTGC | 2 cut(s) | 517, 1743 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1735, 1957 |
| CciI | TCATGA | 1 cut(s) | 3235 |
| CfoI | GCGC | 4 cut(s) | 43, 107, 307, 3066 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 130 |
| Cfr13I | GGNCC | 6 cut(s) | 110, 138, 552, 1993, 2330, 3196 |
| Cfr9I | CCCGGG | 1 cut(s) | 528 |
| CseI | GACGC | 3 cut(s) | 22, 174, 1133 |
| CsiI | ACCWGGT | 1 cut(s) | 2197 |
| Csp6I | GTAC | 6 cut(s) | 868, 955, 963, 1529, 3076, 3088 |
| CviQI | GTAC | 6 cut(s) | 868, 955, 963, 1529, 3076, 3088 |
| DraIII | CACNNNGTG | 1 cut(s) | 148 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2986 |
| DriI | GACNNNNNGTC | 2 cut(s) | 558, 2629 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2986 |
| Eam1104I | CTCTTC | 2 cut(s) | 623, 930 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 558, 2629 |
| EarI | CTCTTC | 2 cut(s) | 623, 930 |
| Ecl136II | GAGCTC | 1 cut(s) | 2935 |
| Eco130I | CCWWGG | 8 cut(s) | 827, 1148, 1214, 1524, 2469, 3038, 3081, 3269 |
| Eco147I | AGGCCT | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 2 cut(s) | 2404, 2937 |
| Eco31I | GGTCTC | 2 cut(s) | 1078, 2029 |
| Eco47I | GGWCC | 5 cut(s) | 138, 552, 1993, 2330, 3196 |
| Eco53kI | GAGCTC | 1 cut(s) | 2935 |
| Eco57I | CTGAAG | 8 cut(s) | 954, 1117, 1667, 1904, 2520, 2544, 2628, 2868 |
| Eco72I | CACGTG | 1 cut(s) | 145 |
| Eco88I | CYCGRG | 2 cut(s) | 528, 2032 |
| Eco91I | GGTNACC | 1 cut(s) | 1455 |
| EcoICRI | GAGCTC | 1 cut(s) | 2935 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1664 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoO65I | GGTNACC | 1 cut(s) | 1455 |
| EcoRII | CCWGG | 6 cut(s) | 1248, 1258, 1568, 1665, 1989, 2197 |
| EcoT14I | CCWWGG | 8 cut(s) | 827, 1148, 1214, 1524, 2469, 3038, 3081, 3269 |
| EcoT22I | ATGCAT | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 2 cut(s) | 2404, 2937 |
| ErhI | CCWWGG | 8 cut(s) | 827, 1148, 1214, 1524, 2469, 3038, 3081, 3269 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2556, 2588 |
| FaqI | GGGAC | 8 cut(s) | 20, 151, 1104, 1600, 1621, 1642, 2244, 3298 |
| FauI | CCCGC | 5 cut(s) | 46, 127, 464, 1626, 1647 |
| FauNDI | CATATG | 2 cut(s) | 2226, 2779 |
| FbaI | TGATCA | 2 cut(s) | 1852, 2758 |
| FblI | GTMKAC | 1 cut(s) | 1594 |
| FokI | GGATG | 9 cut(s) | 618, 680, 1052, 1294, 1507, 2076, 2581, 3257, 3356 |
| FriOI | GRGCYC | 2 cut(s) | 2404, 2937 |
| FspI | TGCGCA | 1 cut(s) | 306 |
| GlaI | GCGC | 4 cut(s) | 42, 106, 306, 3065 |
| GsaI | CCCAGC | 1 cut(s) | 1056 |
| GsuI | CTGGAG | 3 cut(s) | 1585, 1967, 1973 |
| HaeIII | GGCC | 5 cut(s) | 101, 112, 165, 1263, 2652 |
| HapII | CCGG | 8 cut(s) | 11, 86, 108, 131, 392, 529, 1157, 2421 |
| HgaI | GACGC | 3 cut(s) | 22, 174, 1133 |
| HhaI | GCGC | 4 cut(s) | 43, 107, 307, 3066 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin6I | GCGC | 4 cut(s) | 41, 105, 305, 3064 |
| HinP1I | GCGC | 4 cut(s) | 41, 105, 305, 3064 |
| HincII | GTYRAC | 2 cut(s) | 1047, 2319 |
| HindII | GTYRAC | 2 cut(s) | 1047, 2319 |
| HindIII | AAGCTT | 4 cut(s) | 345, 1916, 2180, 3381 |
| HinfI | GANTC | 8 cut(s) | 938, 975, 1043, 1175, 1816, 1840, 2996, 3307 |
| HpaI | GTTAAC | 1 cut(s) | 2319 |
| HpaII | CCGG | 8 cut(s) | 11, 86, 108, 131, 392, 529, 1157, 2421 |
| HphI | GGTGA | 6 cut(s) | 130, 259, 656, 1235, 1787, 2340 |
| Hpy166II | GTNNAC | 9 cut(s) | 121, 1047, 1503, 1595, 2319, 2542, 3078, 3088, 3286 |
| Hpy8I | GTNNAC | 9 cut(s) | 121, 1047, 1503, 1595, 2319, 2542, 3078, 3088, 3286 |
| Hpy99I | CGWCG | 1 cut(s) | 3171 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 201, 700, 3074, 3094 |
| HpySE526I | ACGT | 5 cut(s) | 144, 201, 700, 3074, 3094 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| HspAI | GCGC | 4 cut(s) | 41, 105, 305, 3064 |
| KflI | GGGWCCC | 1 cut(s) | 138 |
| KroI | GCCGGC | 2 cut(s) | 10, 130 |
| KroNI | GCCGGC | 2 cut(s) | 12, 132 |
| Ksp22I | TGATCA | 2 cut(s) | 1852, 2758 |
| KspAI | GTTAAC | 1 cut(s) | 2319 |
| MabI | ACCWGGT | 1 cut(s) | 2197 |
| MaeII | ACGT | 5 cut(s) | 144, 201, 700, 3074, 3094 |
| MaeIII | GTNAC | 6 cut(s) | 265, 325, 746, 1096, 1455, 2492 |
| MfeI | CAATTG | 3 cut(s) | 2006, 2801, 2991 |
| MflI | RGATCY | 4 cut(s) | 361, 1243, 1381, 3110 |
| MhlI | GDGCHC | 5 cut(s) | 2404, 2937, 3037, 3046, 3372 |
| MlyI | GAGTC | 4 cut(s) | 947, 1052, 1834, 2990 |
| MmeI | TCCRAC | 5 cut(s) | 2264, 2393, 2814, 3194, 3238 |
| Mph1103I | ATGCAT | 1 cut(s) | 759 |
| MreI | CGCCGGCG | 1 cut(s) | 130 |
| MroNI | GCCGGC | 2 cut(s) | 10, 130 |
| MseI | TTAA | 6 cut(s) | 45, 1200, 1584, 2318, 2417, 2574 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2453, 3083 |
| MspA1I | CMGCKG | 3 cut(s) | 115, 776, 2648 |
| MspI | CCGG | 8 cut(s) | 11, 86, 108, 131, 392, 529, 1157, 2421 |
| MunI | CAATTG | 3 cut(s) | 2006, 2801, 2991 |
| Mva1269I | GAATGC | 1 cut(s) | 1167 |
| MvaI | CCWGG | 6 cut(s) | 1250, 1260, 1570, 1667, 1991, 2199 |
| MvnI | CGCG | 1 cut(s) | 41 |
| NaeI | GCCGGC | 2 cut(s) | 12, 132 |
| NciI | CCSGG | 6 cut(s) | 86, 109, 529, 530, 1158, 2422 |
| NcoI | CCATGG | 2 cut(s) | 1524, 3038 |
| NdeI | CATATG | 2 cut(s) | 2226, 2779 |
| NgoMIV | GCCGGC | 2 cut(s) | 10, 130 |
| NheI | GCTAGC | 1 cut(s) | 1310 |
| NlaIV | GGNNCC | 9 cut(s) | 139, 140, 611, 1245, 2079, 2331, 2555, 3034, 3045 |
| NmeAIII | GCCGAG | 2 cut(s) | 5, 1369 |
| NmuCI | GTSAC | 2 cut(s) | 265, 746 |
| NsbI | TGCGCA | 1 cut(s) | 306 |
| NsiI | ATGCAT | 1 cut(s) | 759 |
| NspI | RCATGY | 4 cut(s) | 278, 502, 1291, 2218 |
| OliI | CACNNNNGTG | 1 cut(s) | 3083 |
| PaeI | GCATGC | 1 cut(s) | 278 |
| PagI | TCATGA | 1 cut(s) | 3235 |
| PaqCI | CACCTGC | 1 cut(s) | 517 |
| PceI | AGGCCT | 1 cut(s) | 101 |
| PciI | ACATGT | 1 cut(s) | 2214 |
| PctI | GAATGC | 1 cut(s) | 1167 |
| PdiI | GCCGGC | 2 cut(s) | 12, 132 |
| PfeI | GAWTC | 4 cut(s) | 975, 1175, 1816, 3307 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2489 |
| PfoI | TCCNGGA | 1 cut(s) | 1989 |
| PleI | GAGTC | 4 cut(s) | 946, 1051, 1834, 2990 |
| PmaCI | CACGTG | 1 cut(s) | 145 |
| PmlI | CACGTG | 1 cut(s) | 145 |
| PpsI | GAGTC | 4 cut(s) | 946, 1051, 1834, 2990 |
| Ppu21I | YACGTR | 1 cut(s) | 145 |
| PpuMI | RGGWCCY | 1 cut(s) | 138 |
| PscI | ACATGT | 1 cut(s) | 2214 |
| PsiI | TTATAA | 1 cut(s) | 2130 |
| Psp124BI | GAGCTC | 1 cut(s) | 2937 |
| Psp5II | RGGWCCY | 1 cut(s) | 138 |
| Psp6I | CCWGG | 6 cut(s) | 1248, 1258, 1568, 1665, 1989, 2197 |
| PspCI | CACGTG | 1 cut(s) | 145 |
| PspEI | GGTNACC | 1 cut(s) | 1455 |
| PspFI | CCCAGC | 1 cut(s) | 1052 |
| PspGI | CCWGG | 6 cut(s) | 1248, 1258, 1568, 1665, 1989, 2197 |
| PspN4I | GGNNCC | 9 cut(s) | 139, 140, 611, 1245, 2079, 2331, 2555, 3034, 3045 |
| PspPI | GGNCC | 6 cut(s) | 110, 138, 552, 1993, 2330, 3196 |
| PspPPI | RGGWCCY | 1 cut(s) | 138 |
| PstI | CTGCAG | 3 cut(s) | 469, 781, 1740 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1735, 1957 |
| PsuI | RGATCY | 4 cut(s) | 361, 1243, 1381, 3110 |
| PvuII | CAGCTG | 2 cut(s) | 776, 2648 |
| RsaI | GTAC | 6 cut(s) | 869, 956, 964, 1530, 3077, 3089 |
| RsaNI | GTAC | 6 cut(s) | 868, 955, 963, 1529, 3076, 3088 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2453, 3083 |
| SacI | GAGCTC | 1 cut(s) | 2937 |
| SaqAI | TTAA | 6 cut(s) | 45, 1200, 1584, 2318, 2417, 2574 |
| Sau96I | GGNCC | 6 cut(s) | 110, 138, 552, 1993, 2330, 3196 |
| ScaI | AGTACT | 1 cut(s) | 869 |
| SchI | GAGTC | 4 cut(s) | 947, 1052, 1834, 2990 |
| SduI | GDGCHC | 5 cut(s) | 2404, 2937, 3037, 3046, 3372 |
| SexAI | ACCWGGT | 1 cut(s) | 2197 |
| SfcI | CTRYAG | 5 cut(s) | 465, 777, 1736, 2373, 3114 |
| SgrAI | CRCCGGYG | 1 cut(s) | 130 |
| SinI | GGWCC | 5 cut(s) | 138, 552, 1993, 2330, 3196 |
| SmaI | CCCGGG | 1 cut(s) | 530 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2453, 3083 |
| SmlI | CTYRAG | 2 cut(s) | 159, 513 |
| SmoI | CTYRAG | 2 cut(s) | 159, 513 |
| SpeI | ACTAGT | 1 cut(s) | 3220 |
| SphI | GCATGC | 1 cut(s) | 278 |
| SseBI | AGGCCT | 1 cut(s) | 101 |
| SsiI | CCGC | 8 cut(s) | 39, 113, 128, 134, 457, 1619, 1640, 2277 |
| SspI | AATATT | 1 cut(s) | 2878 |
| SstI | GAGCTC | 1 cut(s) | 2937 |
| StuI | AGGCCT | 1 cut(s) | 101 |
| StyI | CCWWGG | 8 cut(s) | 827, 1148, 1214, 1524, 2469, 3038, 3081, 3269 |
| TaiI | ACGT | 5 cut(s) | 147, 204, 703, 3077, 3097 |
| TaqI | TCGA | 2 cut(s) | 336, 2407 |
| TaqII | GACCGA | 1 cut(s) | 3213 |
| TatI | WGTACW | 2 cut(s) | 867, 3087 |
| TauI | GCSGC | 2 cut(s) | 115, 130 |
| TfiI | GAWTC | 4 cut(s) | 975, 1175, 1816, 3307 |
| Tru1I | TTAA | 6 cut(s) | 45, 1200, 1584, 2318, 2417, 2574 |
| Tru9I | TTAA | 6 cut(s) | 45, 1200, 1584, 2318, 2417, 2574 |
| TscAI | CASTG | 9 cut(s) | 268, 427, 819, 985, 1283, 1851, 1962, 2544, 3372 |
| TseFI | GTSAC | 2 cut(s) | 265, 746 |
| Tsp45I | GTSAC | 2 cut(s) | 265, 746 |
| TspGWI | ACGGA | 2 cut(s) | 33, 305 |
| TspMI | CCCGGG | 1 cut(s) | 528 |
| TspRI | CASTG | 9 cut(s) | 268, 427, 819, 985, 1283, 1851, 1962, 2544, 3372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2489 |
| VpaK11BI | GGWCC | 5 cut(s) | 138, 552, 1993, 2330, 3196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1664 |
| XapI | RAATTY | 6 cut(s) | 213, 845, 1297, 1576, 1828, 2911 |
| XbaI | TCTAGA | 1 cut(s) | 2264 |
| XceI | RCATGY | 4 cut(s) | 278, 502, 1291, 2218 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1256, 1576 |
| XmaI | CCCGGG | 1 cut(s) | 528 |
| XmaJI | CCTAGG | 2 cut(s) | 827, 1148 |
| XmiI | GTMKAC | 1 cut(s) | 1594 |
| ZrmI | AGTACT | 1 cut(s) | 869 |
| Zsp2I | ATGCAT | 1 cut(s) | 759 |