Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g06190 |
| malus_domestica | MD13G1234500.v1.1 MD16G1239300.v1.1 |
| prunus_persica | Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1 |
| pyrus_communis | pycom13g20640 pycom16g20020 |
| rosa_chinensis | RchiOBHm_Chr4g0397771 |
| rosa_laevigata | RLG00000009414 |
| rosa_multiflora | Rmu_sc0004527.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00342570 |
| rosa_rugosa | Rorug04G0004100 Rorug04G0004100 Rorug04G0004200 |
| rosa_samantha | Rh4AG080600 Rh4BG078200 Rh4DG073600 |
| rosa_wichuraiana | Rw4G006600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 523 |
| Acc16I | TGCGCA | 1 cut(s) | 46 |
| Acc36I | ACCTGC | 2 cut(s) | 523, 1024 |
| Acc65I | GGTACC | 1 cut(s) | 968 |
| AccB1I | GGYRCC | 3 cut(s) | 20, 968, 2393 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2417 |
| AccII | CGCG | 1 cut(s) | 374 |
| AclI | AACGTT | 1 cut(s) | 2645 |
| AclWI | GGATC | 3 cut(s) | 989, 2747, 3226 |
| AcoI | YGGCCR | 2 cut(s) | 138, 1447 |
| AcsI | RAATTY | 5 cut(s) | 771, 1300, 1576, 2839, 3203 |
| AcuI | CTGAAG | 8 cut(s) | 308, 960, 1123, 1649, 1814, 2448, 2472, 2969 |
| AcvI | CACGTG | 1 cut(s) | 151 |
| AcyI | GRCGYC | 1 cut(s) | 21 |
| AdeI | CACNNNGTG | 1 cut(s) | 154 |
| AfaI | GTAC | 5 cut(s) | 158, 875, 962, 970, 3014 |
| AhlI | ACTAGT | 1 cut(s) | 1909 |
| AjnI | CCWGG | 9 cut(s) | 533, 1154, 1162, 1261, 1308, 1900, 1920, 2125, 2949 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1201, 1233 |
| AleI | CACNNNNGTG | 1 cut(s) | 3008 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 227, 259 |
| Alw21I | GWGCWC | 1 cut(s) | 2854 |
| Alw26I | GTCTC | 3 cut(s) | 263, 1084, 1779 |
| AlwI | GGATC | 3 cut(s) | 989, 2747, 3226 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1891 |
| Ama87I | CYCGRG | 2 cut(s) | 1600, 1963 |
| ApoI | RAATTY | 5 cut(s) | 771, 1300, 1576, 2839, 3203 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2899, 2931 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2435 |
| Asp718I | GGTACC | 1 cut(s) | 968 |
| AspA2I | CCTAGG | 1 cut(s) | 833 |
| AspLEI | GCGC | 6 cut(s) | 23, 47, 113, 376, 918, 1882 |
| AsuC2I | CCSGG | 5 cut(s) | 92, 115, 142, 2149, 2233 |
| AsuHPI | GGTGA | 7 cut(s) | 136, 265, 662, 1238, 1562, 2085, 2268 |
| AsuII | TTCGAA | 1 cut(s) | 933 |
| AvaI | CYCGRG | 2 cut(s) | 1600, 1963 |
| AvaII | GGWCC | 7 cut(s) | 286, 558, 1246, 1924, 2294, 3036, 3121 |
| AvrII | CCTAGG | 1 cut(s) | 833 |
| AxyI | CCTNAGG | 1 cut(s) | 1251 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 952, 952, 985, 985 |
| BalI | TGGCCA | 1 cut(s) | 1449 |
| BanI | GGYRCC | 3 cut(s) | 20, 968, 2393 |
| BanII | GRGCYC | 2 cut(s) | 1514, 2971 |
| BbrPI | CACGTG | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 2854 |
| BbvCI | CCTCAGC | 2 cut(s) | 1461, 2097 |
| BceAI | ACGGC | 2 cut(s) | 34, 450 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 167, 201, 290, 324, 1995, 2029 |
| BciT130I | CCWGG | 9 cut(s) | 535, 1156, 1164, 1263, 1310, 1902, 1922, 2127, 2951 |
| BciVI | GTATCC | 1 cut(s) | 2730 |
| BclI | TGATCA | 2 cut(s) | 1480, 1786 |
| BcnI | CCSGG | 5 cut(s) | 92, 115, 142, 2149, 2233 |
| BcoDI | GTCTC | 3 cut(s) | 263, 1084, 1779 |
| BcuI | ACTAGT | 1 cut(s) | 1909 |
| BfaI | CTAG | 9 cut(s) | 776, 834, 840, 908, 1680, 1910, 1988, 2298, 3179 |
| BfmI | CTRYAG | 2 cut(s) | 783, 2193 |
| BfoI | RGCGCY | 1 cut(s) | 24 |
| BfuAI | ACCTGC | 2 cut(s) | 523, 1024 |
| BfuI | GTATCC | 1 cut(s) | 2730 |
| BglII | AGATCT | 3 cut(s) | 367, 1381, 3082 |
| BlnI | CCTAGG | 1 cut(s) | 833 |
| BlpI | GCTNAGC | 1 cut(s) | 2853 |
| BmcAI | AGTACT | 1 cut(s) | 875 |
| Bme18I | GGWCC | 7 cut(s) | 286, 558, 1246, 1924, 2294, 3036, 3121 |
| BmeT110I | CYCGRG | 2 cut(s) | 1600, 1963 |
| BmrI | ACTGGG | 1 cut(s) | 2878 |
| BmuI | ACTGGG | 1 cut(s) | 2878 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1640 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1444, 1476, 1957, 1989 |
| BpmI | CTGGAG | 2 cut(s) | 1904, 2238 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1268, 1461, 2097 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2853 |
| Bpu14I | TTCGAA | 1 cut(s) | 933 |
| BpuEI | CTTGAG | 3 cut(s) | 150, 362, 504 |
| BpuMI | CCSGG | 5 cut(s) | 92, 115, 142, 2149, 2233 |
| BsaAI | YACGTR | 1 cut(s) | 151 |
| BsaBI | GATNNNNATC | 1 cut(s) | 993 |
| BsaHI | GRCGYC | 1 cut(s) | 21 |
| BsaI | GGTCTC | 1 cut(s) | 1084 |
| BsaWI | WCCGGW | 1 cut(s) | 2390 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 136 |
| Bse1I | ACTGG | 4 cut(s) | 1279, 2221, 2661, 2884 |
| Bse21I | CCTNAGG | 1 cut(s) | 1251 |
| Bse3DI | GCAATG | 5 cut(s) | 1025, 1538, 2472, 2621, 3292 |
| Bse8I | GATNNNNATC | 1 cut(s) | 993 |
| BseBI | CCWGG | 9 cut(s) | 535, 1156, 1164, 1263, 1310, 1902, 1922, 2127, 2951 |
| BseJI | GATNNNNATC | 1 cut(s) | 993 |
| BseMI | GCAATG | 5 cut(s) | 1025, 1538, 2472, 2621, 3292 |
| BseNI | ACTGG | 4 cut(s) | 1279, 2221, 2661, 2884 |
| BseRI | GAGGAG | 3 cut(s) | 480, 1401, 3036 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseX3I | CGGCCG | 1 cut(s) | 138 |
| BseYI | CCCAGC | 2 cut(s) | 1058, 1617 |
| BsgI | GTGCAG | 2 cut(s) | 489, 2547 |
| Bsh1236I | CGCG | 1 cut(s) | 374 |
| Bsh1285I | CGRYCG | 1 cut(s) | 141 |
| BshNI | GGYRCC | 3 cut(s) | 20, 968, 2393 |
| BsiEI | CGRYCG | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2854 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1600, 1963 |
| BslFI | GGGAC | 8 cut(s) | 157, 964, 1137, 1291, 1600, 1936, 2172, 3123 |
| BsmAI | GTCTC | 3 cut(s) | 263, 1084, 1779 |
| BsmFI | GGGAC | 8 cut(s) | 157, 964, 1137, 1291, 1600, 1936, 2172, 3123 |
| BsmI | GAATGC | 2 cut(s) | 1173, 1339 |
| Bso31I | GGTCTC | 1 cut(s) | 1084 |
| BsoBI | CYCGRG | 2 cut(s) | 1600, 1963 |
| Bsp119I | TTCGAA | 1 cut(s) | 933 |
| Bsp1286I | GDGCHC | 4 cut(s) | 462, 1514, 2854, 2971 |
| Bsp1407I | TGTACA | 1 cut(s) | 3012 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2853 |
| Bsp19I | CCATGG | 2 cut(s) | 2411, 2963 |
| BspFNI | CGCG | 1 cut(s) | 374 |
| BspHI | TCATGA | 1 cut(s) | 3160 |
| BspMAI | CTGCAG | 1 cut(s) | 787 |
| BspMI | ACCTGC | 2 cut(s) | 523, 1024 |
| BspPI | GGATC | 3 cut(s) | 989, 2747, 3226 |
| BspT104I | TTCGAA | 1 cut(s) | 933 |
| BspT107I | GGYRCC | 3 cut(s) | 20, 968, 2393 |
| BspTNI | GGTCTC | 1 cut(s) | 1084 |
| BsrDI | GCAATG | 5 cut(s) | 1025, 1538, 2472, 2621, 3292 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 136 |
| BsrGI | TGTACA | 1 cut(s) | 3012 |
| BsrI | ACTGG | 4 cut(s) | 1279, 2221, 2661, 2884 |
| BssAI | RCCGGY | 2 cut(s) | 10, 136 |
| BssNI | GRCGYC | 1 cut(s) | 21 |
| BssT1I | CCWWGG | 7 cut(s) | 61, 833, 1217, 2411, 2963, 3006, 3194 |
| Bst2UI | CCWGG | 9 cut(s) | 535, 1156, 1164, 1263, 1310, 1902, 1922, 2127, 2951 |
| Bst6I | CTCTTC | 3 cut(s) | 629, 936, 2815 |
| BstACI | GRCGYC | 1 cut(s) | 21 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 791, 1891 |
| BstAUI | TGTACA | 1 cut(s) | 3012 |
| BstBAI | YACGTR | 1 cut(s) | 151 |
| BstBI | TTCGAA | 1 cut(s) | 933 |
| BstDSI | CCRYGG | 3 cut(s) | 2411, 2963, 3124 |
| BstFNI | CGCG | 1 cut(s) | 374 |
| BstH2I | RGCGCY | 1 cut(s) | 24 |
| BstHHI | GCGC | 6 cut(s) | 23, 47, 113, 376, 918, 1882 |
| BstMAI | GTCTC | 3 cut(s) | 263, 1084, 1779 |
| BstMCI | CGRYCG | 1 cut(s) | 141 |
| BstNI | CCWGG | 9 cut(s) | 535, 1156, 1164, 1263, 1310, 1902, 1922, 2127, 2951 |
| BstNSI | RCATGY | 3 cut(s) | 284, 891, 916 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1640 |
| BstSFI | CTRYAG | 2 cut(s) | 783, 2193 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstUI | CGCG | 1 cut(s) | 374 |
| BstX2I | RGATCY | 4 cut(s) | 367, 1381, 3082, 3231 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2891 |
| BstYI | RGATCY | 4 cut(s) | 367, 1381, 3082, 3231 |
| BstZI | CGGCCG | 1 cut(s) | 138 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1251 |
| BsuI | GTATCC | 1 cut(s) | 2730 |
| BtgI | CCRYGG | 3 cut(s) | 2411, 2963, 3124 |
| BtsI | GCAGTG | 1 cut(s) | 1889 |
| BtsIMutI | CAGTG | 4 cut(s) | 462, 1286, 1889, 2472 |
| BveI | ACCTGC | 2 cut(s) | 523, 1024 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1891 |
| CciI | TCATGA | 1 cut(s) | 3160 |
| CfoI | GCGC | 6 cut(s) | 23, 47, 113, 376, 918, 1882 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 136 |
| CseI | GACGC | 2 cut(s) | 154, 328 |
| CsiI | ACCWGGT | 1 cut(s) | 2125 |
| Csp6I | GTAC | 5 cut(s) | 157, 874, 961, 969, 3013 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2754, 2789 |
| CviQI | GTAC | 5 cut(s) | 157, 874, 961, 969, 3013 |
| DinI | GGCGCC | 1 cut(s) | 22 |
| DraIII | CACNNNGTG | 1 cut(s) | 154 |
| EaeI | YGGCCR | 2 cut(s) | 138, 1447 |
| EagI | CGGCCG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 3 cut(s) | 629, 936, 2815 |
| EarI | CTCTTC | 3 cut(s) | 629, 936, 2815 |
| EciI | GGCGGA | 2 cut(s) | 554, 2967 |
| EclXI | CGGCCG | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 7 cut(s) | 61, 833, 1217, 2411, 2963, 3006, 3194 |
| Eco147I | AGGCCT | 2 cut(s) | 1969, 3335 |
| Eco24I | GRGCYC | 2 cut(s) | 1514, 2971 |
| Eco31I | GGTCTC | 1 cut(s) | 1084 |
| Eco47I | GGWCC | 7 cut(s) | 286, 558, 1246, 1924, 2294, 3036, 3121 |
| Eco52I | CGGCCG | 1 cut(s) | 138 |
| Eco57I | CTGAAG | 8 cut(s) | 308, 960, 1123, 1649, 1814, 2448, 2472, 2969 |
| Eco72I | CACGTG | 1 cut(s) | 151 |
| Eco81I | CCTNAGG | 1 cut(s) | 1251 |
| Eco88I | CYCGRG | 2 cut(s) | 1600, 1963 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1246 |
| EcoRI | GAATTC | 1 cut(s) | 771 |
| EcoRII | CCWGG | 9 cut(s) | 533, 1154, 1162, 1261, 1308, 1900, 1920, 2125, 2949 |
| EcoT14I | CCWWGG | 7 cut(s) | 61, 833, 1217, 2411, 2963, 3006, 3194 |
| EcoT22I | ATGCAT | 2 cut(s) | 355, 765 |
| EcoT38I | GRGCYC | 2 cut(s) | 1514, 2971 |
| EgeI | GGCGCC | 1 cut(s) | 22 |
| EheI | GGCGCC | 1 cut(s) | 22 |
| ErhI | CCWWGG | 7 cut(s) | 61, 833, 1217, 2411, 2963, 3006, 3194 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2484, 2516 |
| FaqI | GGGAC | 8 cut(s) | 157, 964, 1137, 1291, 1600, 1936, 2172, 3123 |
| FauI | CCCGC | 4 cut(s) | 470, 2514, 3249, 3320 |
| FauNDI | CATATG | 1 cut(s) | 2154 |
| FbaI | TGATCA | 2 cut(s) | 1480, 1786 |
| FriOI | GRGCYC | 2 cut(s) | 1514, 2971 |
| FspBI | CTAG | 9 cut(s) | 776, 834, 840, 908, 1680, 1910, 1988, 2298, 3179 |
| FspI | TGCGCA | 1 cut(s) | 46 |
| GlaI | GCGC | 6 cut(s) | 22, 46, 112, 375, 917, 1881 |
| GsaI | CCCAGC | 2 cut(s) | 1062, 1621 |
| GsuI | CTGGAG | 2 cut(s) | 1904, 2238 |
| HaeII | RGCGCY | 1 cut(s) | 24 |
| HgaI | GACGC | 2 cut(s) | 154, 328 |
| HhaI | GCGC | 6 cut(s) | 23, 47, 113, 376, 918, 1882 |
| Hin1I | GRCGYC | 1 cut(s) | 21 |
| Hin6I | GCGC | 6 cut(s) | 21, 45, 111, 374, 916, 1880 |
| HinP1I | GCGC | 6 cut(s) | 21, 45, 111, 374, 916, 1880 |
| HincII | GTYRAC | 2 cut(s) | 1053, 1907 |
| HindII | GTYRAC | 2 cut(s) | 1053, 1907 |
| HindIII | AAGCTT | 3 cut(s) | 1850, 2108, 3306 |
| HinfI | GANTC | 9 cut(s) | 653, 944, 1049, 1147, 1181, 2482, 2496, 2746, 2924 |
| HphI | GGTGA | 7 cut(s) | 136, 265, 662, 1238, 1562, 2085, 2268 |
| Hpy166II | GTNNAC | 8 cut(s) | 127, 157, 1053, 1127, 1907, 2470, 3013, 3211 |
| Hpy8I | GTNNAC | 8 cut(s) | 127, 157, 1053, 1127, 1907, 2470, 3013, 3211 |
| Hpy99I | CGWCG | 1 cut(s) | 3096 |
| HpyAV | CCTTC | 9 cut(s) | 248, 272, 571, 823, 951, 1237, 1980, 2472, 3325 |
| HpyCH4IV | ACGT | 3 cut(s) | 150, 592, 2645 |
| HpySE526I | ACGT | 3 cut(s) | 150, 592, 2645 |
| Hsp92I | GRCGYC | 1 cut(s) | 21 |
| HspAI | GCGC | 6 cut(s) | 21, 45, 111, 374, 916, 1880 |
| KasI | GGCGCC | 1 cut(s) | 20 |
| KpnI | GGTACC | 1 cut(s) | 972 |
| KroI | GCCGGC | 2 cut(s) | 10, 136 |
| KroNI | GCCGGC | 2 cut(s) | 12, 138 |
| Ksp22I | TGATCA | 2 cut(s) | 1480, 1786 |
| MabI | ACCWGGT | 1 cut(s) | 2125 |
| MaeI | CTAG | 9 cut(s) | 776, 834, 840, 908, 1680, 1910, 1988, 2298, 3179 |
| MaeII | ACGT | 3 cut(s) | 150, 592, 2645 |
| MaeIII | GTNAC | 6 cut(s) | 271, 593, 752, 1102, 1869, 2420 |
| MfeI | CAATTG | 1 cut(s) | 2729 |
| MflI | RGATCY | 4 cut(s) | 367, 1381, 3082, 3231 |
| MhlI | GDGCHC | 4 cut(s) | 462, 1514, 2854, 2971 |
| MlsI | TGGCCA | 1 cut(s) | 1449 |
| MluNI | TGGCCA | 1 cut(s) | 1449 |
| Mly113I | GGCGCC | 1 cut(s) | 21 |
| MlyI | GAGTC | 4 cut(s) | 953, 1058, 1175, 2918 |
| MmeI | TCCRAC | 5 cut(s) | 1658, 1939, 2464, 2739, 3163 |
| Mox20I | TGGCCA | 1 cut(s) | 1449 |
| Mph1103I | ATGCAT | 2 cut(s) | 355, 765 |
| MreI | CGCCGGCG | 1 cut(s) | 10 |
| MroNI | GCCGGC | 2 cut(s) | 10, 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2435 |
| MscI | TGGCCA | 1 cut(s) | 1449 |
| MseI | TTAA | 7 cut(s) | 1371, 1443, 1584, 2384, 2426, 2457, 3075 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1982, 3008, 3044 |
| Msp20I | TGGCCA | 1 cut(s) | 1449 |
| MspA1I | CMGCKG | 8 cut(s) | 42, 121, 473, 782, 2198, 2531, 2958, 2989 |
| MunI | CAATTG | 1 cut(s) | 2729 |
| Mva1269I | GAATGC | 2 cut(s) | 1173, 1339 |
| MvaI | CCWGG | 9 cut(s) | 535, 1156, 1164, 1263, 1310, 1902, 1922, 2127, 2951 |
| MvnI | CGCG | 1 cut(s) | 374 |
| NaeI | GCCGGC | 2 cut(s) | 12, 138 |
| NarI | GGCGCC | 1 cut(s) | 21 |
| NciI | CCSGG | 5 cut(s) | 92, 115, 142, 2149, 2233 |
| NcoI | CCATGG | 2 cut(s) | 2411, 2963 |
| NdeI | CATATG | 1 cut(s) | 2154 |
| NgoMIV | GCCGGC | 2 cut(s) | 10, 136 |
| NmuCI | GTSAC | 4 cut(s) | 271, 593, 752, 1869 |
| NsbI | TGCGCA | 1 cut(s) | 46 |
| NsiI | ATGCAT | 2 cut(s) | 355, 765 |
| NspI | RCATGY | 3 cut(s) | 284, 891, 916 |
| NspV | TTCGAA | 1 cut(s) | 933 |
| OliI | CACNNNNGTG | 1 cut(s) | 3008 |
| PaeI | GCATGC | 2 cut(s) | 284, 916 |
| PaeR7I | CTCGAG | 2 cut(s) | 1600, 1963 |
| PagI | TCATGA | 1 cut(s) | 3160 |
| PaqCI | CACCTGC | 1 cut(s) | 523 |
| PasI | CCCWGGG | 1 cut(s) | 1309 |
| PceI | AGGCCT | 2 cut(s) | 1969, 3335 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2298 |
| PctI | GAATGC | 2 cut(s) | 1173, 1339 |
| PdiI | GCCGGC | 2 cut(s) | 12, 138 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2435 |
| PfeI | GAWTC | 5 cut(s) | 653, 1147, 2482, 2496, 2746 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2417 |
| PfoI | TCCNGGA | 2 cut(s) | 1920, 2949 |
| PleI | GAGTC | 4 cut(s) | 952, 1057, 1175, 2918 |
| PluTI | GGCGCC | 1 cut(s) | 24 |
| PmaCI | CACGTG | 1 cut(s) | 151 |
| PmlI | CACGTG | 1 cut(s) | 151 |
| PpsI | GAGTC | 4 cut(s) | 952, 1057, 1175, 2918 |
| Ppu21I | YACGTR | 1 cut(s) | 151 |
| PpuMI | RGGWCCY | 1 cut(s) | 1246 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1640 |
| Psp1406I | AACGTT | 1 cut(s) | 2645 |
| Psp5II | RGGWCCY | 1 cut(s) | 1246 |
| Psp6I | CCWGG | 9 cut(s) | 533, 1154, 1162, 1261, 1308, 1900, 1920, 2125, 2949 |
| PspCI | CACGTG | 1 cut(s) | 151 |
| PspFI | CCCAGC | 2 cut(s) | 1058, 1617 |
| PspGI | CCWGG | 9 cut(s) | 533, 1154, 1162, 1261, 1308, 1900, 1920, 2125, 2949 |
| PspPPI | RGGWCCY | 1 cut(s) | 1246 |
| PspXI | VCTCGAGB | 1 cut(s) | 1600 |
| PstI | CTGCAG | 1 cut(s) | 787 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1891 |
| PsuI | RGATCY | 4 cut(s) | 367, 1381, 3082, 3231 |
| PvuII | CAGCTG | 4 cut(s) | 42, 782, 2198, 2531 |
| RsaI | GTAC | 5 cut(s) | 158, 875, 962, 970, 3014 |
| RsaNI | GTAC | 5 cut(s) | 157, 874, 961, 969, 3013 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1982, 3008, 3044 |
| SaqAI | TTAA | 7 cut(s) | 1371, 1443, 1584, 2384, 2426, 2457, 3075 |
| ScaI | AGTACT | 1 cut(s) | 875 |
| SchI | GAGTC | 4 cut(s) | 953, 1058, 1175, 2918 |
| SduI | GDGCHC | 4 cut(s) | 462, 1514, 2854, 2971 |
| SexAI | ACCWGGT | 1 cut(s) | 2125 |
| SfcI | CTRYAG | 2 cut(s) | 783, 2193 |
| SfoI | GGCGCC | 1 cut(s) | 22 |
| Sfr274I | CTCGAG | 2 cut(s) | 1600, 1963 |
| SfuI | TTCGAA | 1 cut(s) | 933 |
| SgrAI | CRCCGGYG | 1 cut(s) | 10 |
| SinI | GGWCC | 7 cut(s) | 286, 558, 1246, 1924, 2294, 3036, 3121 |
| SlaI | CTCGAG | 2 cut(s) | 1600, 1963 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1982, 3008, 3044 |
| SmlI | CTYRAG | 5 cut(s) | 165, 377, 519, 1600, 1963 |
| SmoI | CTYRAG | 5 cut(s) | 165, 377, 519, 1600, 1963 |
| SpeI | ACTAGT | 1 cut(s) | 1909 |
| SphI | GCATGC | 2 cut(s) | 284, 916 |
| SseBI | AGGCCT | 2 cut(s) | 1969, 3335 |
| SspDI | GGCGCC | 1 cut(s) | 20 |
| SspI | AATATT | 1 cut(s) | 2382 |
| SspMI | CTAG | 9 cut(s) | 776, 834, 840, 908, 1680, 1910, 1988, 2298, 3179 |
| StuI | AGGCCT | 2 cut(s) | 1969, 3335 |
| StyI | CCWWGG | 7 cut(s) | 61, 833, 1217, 2411, 2963, 3006, 3194 |
| TaiI | ACGT | 3 cut(s) | 153, 595, 2648 |
| TaqI | TCGA | 9 cut(s) | 495, 577, 933, 1095, 1145, 1601, 1964, 2918, 3091 |
| TatI | WGTACW | 3 cut(s) | 156, 873, 3012 |
| TauI | GCSGC | 7 cut(s) | 10, 121, 136, 191, 1745, 2946, 2961 |
| TfiI | GAWTC | 5 cut(s) | 653, 1147, 2482, 2496, 2746 |
| Tru1I | TTAA | 7 cut(s) | 1371, 1443, 1584, 2384, 2426, 2457, 3075 |
| Tru9I | TTAA | 7 cut(s) | 1371, 1443, 1584, 2384, 2426, 2457, 3075 |
| TscAI | CASTG | 4 cut(s) | 462, 1286, 1896, 2472 |
| TseFI | GTSAC | 4 cut(s) | 271, 593, 752, 1869 |
| Tsp45I | GTSAC | 4 cut(s) | 271, 593, 752, 1869 |
| TspGWI | ACGGA | 1 cut(s) | 2307 |
| TspRI | CASTG | 4 cut(s) | 462, 1286, 1896, 2472 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2417 |
| VpaK11BI | GGWCC | 7 cut(s) | 286, 558, 1246, 1924, 2294, 3036, 3121 |
| XapI | RAATTY | 5 cut(s) | 771, 1300, 1576, 2839, 3203 |
| XceI | RCATGY | 3 cut(s) | 284, 891, 916 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1652, 2668 |
| XhoI | CTCGAG | 2 cut(s) | 1600, 1963 |
| XmaJI | CCTAGG | 1 cut(s) | 833 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2435 |
| XspI | CTAG | 9 cut(s) | 776, 834, 840, 908, 1680, 1910, 1988, 2298, 3179 |
| ZrmI | AGTACT | 1 cut(s) | 875 |
| Zsp2I | ATGCAT | 2 cut(s) | 355, 765 |