Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g06190 |
| malus_domestica | MD13G1234500.v1.1 MD16G1239300.v1.1 |
| prunus_persica | Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1 |
| pyrus_communis | pycom13g20640 pycom16g20020 |
| rosa_chinensis | RchiOBHm_Chr4g0397771 |
| rosa_laevigata | RLG00000009414 |
| rosa_multiflora | Rmu_sc0004527.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00342570 |
| rosa_rugosa | Rorug04G0004100 Rorug04G0004100 Rorug04G0004200 |
| rosa_samantha | Rh4AG080600 Rh4BG078200 Rh4DG073600 |
| rosa_wichuraiana | Rw4G006600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2411 |
| AarI | CACCTGC | 1 cut(s) | 517 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2938 |
| Acc36I | ACCTGC | 2 cut(s) | 517, 1003 |
| AccB1I | GGYRCC | 2 cut(s) | 32, 2992 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2444 |
| AccI | GTMKAC | 2 cut(s) | 1579, 3036 |
| AccIII | TCCGGA | 1 cut(s) | 2923 |
| AclWI | GGATC | 7 cut(s) | 968, 1223, 1236, 1374, 1936, 2774, 3209 |
| AcoI | YGGCCR | 2 cut(s) | 132, 771 |
| AcsI | RAATTY | 6 cut(s) | 213, 845, 1282, 1561, 1783, 2863 |
| AcuI | CTGAAG | 9 cut(s) | 392, 954, 1102, 1631, 1859, 2475, 2499, 2583, 2823 |
| AcvI | CACGTG | 1 cut(s) | 145 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 148 |
| AfaI | GTAC | 7 cut(s) | 152, 327, 869, 941, 949, 1515, 1551 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 558 |
| AhlI | ACTAGT | 1 cut(s) | 3169 |
| AjiI | CACGTC | 1 cut(s) | 701 |
| AjnI | CCWGG | 9 cut(s) | 527, 548, 1141, 1233, 1243, 1553, 1944, 2152, 2706 |
| Alw21I | GWGCWC | 1 cut(s) | 3099 |
| Alw26I | GTCTC | 3 cut(s) | 257, 1980, 3291 |
| AlwI | GGATC | 7 cut(s) | 968, 1223, 1236, 1374, 1936, 2774, 3209 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1912 |
| Ama87I | CYCGRG | 1 cut(s) | 1987 |
| Aor13HI | TCCGGA | 1 cut(s) | 2923 |
| AoxI | GGCC | 9 cut(s) | 99, 110, 132, 163, 771, 1130, 1991, 2356, 2605 |
| ApoI | RAATTY | 6 cut(s) | 213, 845, 1282, 1561, 1783, 2863 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1469, 1501, 1750, 1782 |
| AspA2I | CCTAGG | 2 cut(s) | 827, 1133 |
| AspLEI | GCGC | 4 cut(s) | 35, 107, 912, 1396 |
| AspS9I | GGNCC | 9 cut(s) | 110, 138, 163, 280, 552, 1948, 1992, 2356, 3145 |
| AsuC2I | CCSGG | 5 cut(s) | 86, 109, 136, 2176, 2269 |
| AsuHPI | GGTGA | 6 cut(s) | 130, 259, 656, 1220, 1547, 2295 |
| AsuNHI | GCTAGC | 1 cut(s) | 1295 |
| AvaI | CYCGRG | 1 cut(s) | 1987 |
| AvaII | GGWCC | 5 cut(s) | 138, 280, 552, 1948, 3145 |
| AvrII | CCTAGG | 2 cut(s) | 827, 1133 |
| AxyI | CCTNAGG | 1 cut(s) | 159 |
| BaeGI | GKGCMC | 2 cut(s) | 2986, 2995 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1533, 1566 |
| BamHI | GGATCC | 1 cut(s) | 1228 |
| BanI | GGYRCC | 2 cut(s) | 32, 2992 |
| BanII | GRGCYC | 1 cut(s) | 3099 |
| BbrPI | CACGTG | 1 cut(s) | 145 |
| Bbv12I | GWGCWC | 1 cut(s) | 3099 |
| BbvCI | CCTCAGC | 2 cut(s) | 1407, 1446 |
| BccI | CCATC | 9 cut(s) | 600, 847, 978, 1375, 1839, 2296, 2367, 2446, 3287 |
| BceAI | ACGGC | 1 cut(s) | 444 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 161, 195, 284, 318, 1016, 1050 |
| BciT130I | CCWGG | 9 cut(s) | 529, 550, 1143, 1235, 1245, 1555, 1946, 2154, 2708 |
| BclI | TGATCA | 1 cut(s) | 1807 |
| BcnI | CCSGG | 5 cut(s) | 86, 109, 136, 2176, 2269 |
| BcoDI | GTCTC | 3 cut(s) | 257, 1980, 3291 |
| BcuI | ACTAGT | 1 cut(s) | 3169 |
| BfmI | CTRYAG | 3 cut(s) | 777, 1421, 3063 |
| BfoI | RGCGCY | 2 cut(s) | 36, 1397 |
| BfuAI | ACCTGC | 2 cut(s) | 517, 1003 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2990 |
| BglII | AGATCT | 2 cut(s) | 361, 3059 |
| BlnI | CCTAGG | 2 cut(s) | 827, 1133 |
| BlpI | GCTNAGC | 1 cut(s) | 2877 |
| BmcAI | AGTACT | 1 cut(s) | 869 |
| Bme18I | GGWCC | 5 cut(s) | 138, 280, 552, 1948, 3145 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 558 |
| BmeT110I | CYCGRG | 1 cut(s) | 1987 |
| BmgBI | CACGTC | 1 cut(s) | 701 |
| BmgT120I | GGNCC | 9 cut(s) | 110, 138, 163, 280, 552, 1948, 1992, 2356, 3145 |
| BmiI | GGNNCC | 9 cut(s) | 34, 139, 140, 282, 611, 1230, 2286, 2357, 2994 |
| BmrI | ACTGGG | 2 cut(s) | 2385, 2902 |
| BmtI | GCTAGC | 1 cut(s) | 1299 |
| BmuI | ACTGGG | 2 cut(s) | 2385, 2902 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1429, 1461 |
| BpmI | CTGGAG | 1 cut(s) | 1922 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1407, 1446 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2877 |
| BpuEI | CTTGAG | 3 cut(s) | 498, 2401, 2791 |
| BpuMI | CCSGG | 5 cut(s) | 86, 109, 136, 2176, 2269 |
| BsaAI | YACGTR | 1 cut(s) | 145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaWI | WCCGGW | 3 cut(s) | 391, 2923, 3083 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 54, 84, 3145, 3175 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 130 |
| Bse1I | ACTGG | 5 cut(s) | 420, 1261, 2203, 2380, 2908 |
| Bse21I | CCTNAGG | 1 cut(s) | 159 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseAI | TCCGGA | 1 cut(s) | 2923 |
| BseBI | CCWGG | 9 cut(s) | 529, 550, 1143, 1235, 1245, 1555, 1946, 2154, 2708 |
| BseGI | GGATG | 9 cut(s) | 205, 611, 673, 1272, 1505, 2116, 2529, 3021, 3298 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseNI | ACTGG | 5 cut(s) | 420, 1261, 2203, 2380, 2908 |
| BseRI | GAGGAG | 2 cut(s) | 474, 3239 |
| BseSI | GKGCMC | 2 cut(s) | 2986, 2995 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseYI | CCCAGC | 1 cut(s) | 1037 |
| BsgI | GTGCAG | 2 cut(s) | 483, 2574 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshFI | GGCC | 9 cut(s) | 101, 112, 134, 165, 773, 1132, 1993, 2358, 2607 |
| BshNI | GGYRCC | 2 cut(s) | 32, 2992 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3099 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1987 |
| BslFI | GGGAC | 8 cut(s) | 151, 588, 1037, 1089, 1585, 1606, 2199, 3247 |
| BsmAI | GTCTC | 3 cut(s) | 257, 1980, 3291 |
| BsmBI | CGTCTC | 1 cut(s) | 1980 |
| BsmFI | GGGAC | 8 cut(s) | 151, 588, 1037, 1089, 1585, 1606, 2199, 3247 |
| BsmI | GAATGC | 1 cut(s) | 1152 |
| BsnI | GGCC | 9 cut(s) | 101, 112, 134, 165, 773, 1132, 1993, 2358, 2607 |
| BsoBI | CYCGRG | 1 cut(s) | 1987 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2986, 2995, 3099 |
| Bsp13I | TCCGGA | 1 cut(s) | 2923 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2877 |
| Bsp19I | CCATGG | 2 cut(s) | 1509, 2987 |
| BspANI | GGCC | 9 cut(s) | 101, 112, 134, 165, 773, 1132, 1993, 2358, 2607 |
| BspEI | TCCGGA | 1 cut(s) | 2923 |
| BspHI | TCATGA | 1 cut(s) | 3184 |
| BspLI | GGNNCC | 9 cut(s) | 34, 139, 140, 282, 611, 1230, 2286, 2357, 2994 |
| BspMAI | CTGCAG | 1 cut(s) | 781 |
| BspMI | ACCTGC | 2 cut(s) | 517, 1003 |
| BspOI | GCTAGC | 1 cut(s) | 1299 |
| BspPI | GGATC | 7 cut(s) | 968, 1223, 1236, 1374, 1936, 2774, 3209 |
| BspT107I | GGYRCC | 2 cut(s) | 32, 2992 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 130 |
| BsrI | ACTGG | 5 cut(s) | 420, 1261, 2203, 2380, 2908 |
| BssAI | RCCGGY | 2 cut(s) | 10, 130 |
| BssNAI | GTATAC | 1 cut(s) | 3037 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 8 cut(s) | 827, 1133, 1199, 1509, 2424, 2987, 3030, 3218 |
| Bst1107I | GTATAC | 1 cut(s) | 3037 |
| Bst2UI | CCWGG | 9 cut(s) | 529, 550, 1143, 1235, 1245, 1555, 1946, 2154, 2708 |
| Bst6I | CTCTTC | 3 cut(s) | 623, 930, 2842 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 785, 884, 1912, 2020 |
| BstBAI | YACGTR | 1 cut(s) | 145 |
| BstDSI | CCRYGG | 2 cut(s) | 1509, 2987 |
| BstEII | GGTNACC | 1 cut(s) | 1440 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1449 |
| BstF5I | GGATG | 9 cut(s) | 205, 611, 673, 1272, 1505, 2116, 2529, 3021, 3298 |
| BstH2I | RGCGCY | 2 cut(s) | 36, 1397 |
| BstHHI | GCGC | 4 cut(s) | 35, 107, 912, 1396 |
| BstMAI | GTCTC | 3 cut(s) | 257, 1980, 3291 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstNI | CCWGG | 9 cut(s) | 529, 550, 1143, 1235, 1245, 1555, 1946, 2154, 2708 |
| BstNSI | RCATGY | 5 cut(s) | 278, 502, 910, 1276, 2848 |
| BstPI | GGTNACC | 1 cut(s) | 1440 |
| BstSFI | CTRYAG | 3 cut(s) | 777, 1421, 3063 |
| BstSLI | GKGCMC | 2 cut(s) | 2986, 2995 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1228, 1366, 1941, 3059 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2102, 2915 |
| BstYI | RGATCY | 5 cut(s) | 361, 1228, 1366, 1941, 3059 |
| BstZ17I | GTATAC | 1 cut(s) | 3037 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| Bsu36I | CCTNAGG | 1 cut(s) | 159 |
| BsuRI | GGCC | 9 cut(s) | 101, 112, 134, 165, 773, 1132, 1993, 2358, 2607 |
| BtgI | CCRYGG | 2 cut(s) | 1509, 2987 |
| BtrI | CACGTC | 1 cut(s) | 701 |
| BtsCI | GGATG | 9 cut(s) | 205, 611, 673, 1272, 1505, 2116, 2529, 3021, 3298 |
| BtsI | GCAGTG | 2 cut(s) | 1910, 3321 |
| BtsIMutI | CAGTG | 9 cut(s) | 268, 427, 970, 1268, 1488, 1910, 2499, 2986, 3321 |
| BveI | ACCTGC | 2 cut(s) | 517, 1003 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1912 |
| CciI | TCATGA | 1 cut(s) | 3184 |
| CfoI | GCGC | 4 cut(s) | 35, 107, 912, 1396 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 130 |
| Cfr13I | GGNCC | 9 cut(s) | 110, 138, 163, 280, 552, 1948, 1992, 2356, 3145 |
| CseI | GACGC | 2 cut(s) | 353, 1962 |
| CsiI | ACCWGGT | 2 cut(s) | 1243, 2152 |
| Csp6I | GTAC | 7 cut(s) | 151, 326, 868, 940, 948, 1514, 1550 |
| CviQI | GTAC | 7 cut(s) | 151, 326, 868, 940, 948, 1514, 1550 |
| DinI | GGCGCC | 1 cut(s) | 34 |
| DraI | TTTAAA | 1 cut(s) | 1186 |
| DraIII | CACNNNGTG | 1 cut(s) | 148 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2938 |
| DriI | GACNNNNNGTC | 1 cut(s) | 558 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2938 |
| EaeI | YGGCCR | 2 cut(s) | 132, 771 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 3 cut(s) | 623, 930, 2842 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 558 |
| EarI | CTCTTC | 3 cut(s) | 623, 930, 2842 |
| EciI | GGCGGA | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 3097 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 8 cut(s) | 827, 1133, 1199, 1509, 2424, 2987, 3030, 3218 |
| Eco147I | AGGCCT | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 1 cut(s) | 3099 |
| Eco47I | GGWCC | 5 cut(s) | 138, 280, 552, 1948, 3145 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 3097 |
| Eco57I | CTGAAG | 9 cut(s) | 392, 954, 1102, 1631, 1859, 2475, 2499, 2583, 2823 |
| Eco72I | CACGTG | 1 cut(s) | 145 |
| Eco81I | CCTNAGG | 1 cut(s) | 159 |
| Eco88I | CYCGRG | 1 cut(s) | 1987 |
| Eco91I | GGTNACC | 1 cut(s) | 1440 |
| EcoICRI | GAGCTC | 1 cut(s) | 3097 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1449 |
| EcoO109I | RGGNCCY | 2 cut(s) | 138, 1992 |
| EcoO65I | GGTNACC | 1 cut(s) | 1440 |
| EcoRII | CCWGG | 9 cut(s) | 527, 548, 1141, 1233, 1243, 1553, 1944, 2152, 2706 |
| EcoT14I | CCWWGG | 8 cut(s) | 827, 1133, 1199, 1509, 2424, 2987, 3030, 3218 |
| EcoT22I | ATGCAT | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 1 cut(s) | 3099 |
| EgeI | GGCGCC | 1 cut(s) | 34 |
| EheI | GGCGCC | 1 cut(s) | 34 |
| ErhI | CCWWGG | 8 cut(s) | 827, 1133, 1199, 1509, 2424, 2987, 3030, 3218 |
| Esp3I | CGTCTC | 1 cut(s) | 1980 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2511, 2543 |
| FaqI | GGGAC | 8 cut(s) | 151, 588, 1037, 1089, 1585, 1606, 2199, 3247 |
| FauI | CCCGC | 2 cut(s) | 464, 1611 |
| FauNDI | CATATG | 2 cut(s) | 2181, 2734 |
| FbaI | TGATCA | 1 cut(s) | 1807 |
| FblI | GTMKAC | 2 cut(s) | 1579, 3036 |
| FokI | GGATG | 9 cut(s) | 212, 618, 680, 1279, 1492, 2103, 2536, 3028, 3305 |
| FriOI | GRGCYC | 1 cut(s) | 3099 |
| GlaI | GCGC | 4 cut(s) | 34, 106, 911, 1395 |
| GsaI | CCCAGC | 1 cut(s) | 1041 |
| GsuI | CTGGAG | 1 cut(s) | 1922 |
| HaeII | RGCGCY | 2 cut(s) | 36, 1397 |
| HaeIII | GGCC | 9 cut(s) | 101, 112, 134, 165, 773, 1132, 1993, 2358, 2607 |
| HgaI | GACGC | 2 cut(s) | 353, 1962 |
| HhaI | GCGC | 4 cut(s) | 35, 107, 912, 1396 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin6I | GCGC | 4 cut(s) | 33, 105, 910, 1394 |
| HinP1I | GCGC | 4 cut(s) | 33, 105, 910, 1394 |
| HincII | GTYRAC | 3 cut(s) | 1032, 2274, 2652 |
| HindII | GTYRAC | 3 cut(s) | 1032, 2274, 2652 |
| HindIII | AAGCTT | 4 cut(s) | 1252, 1871, 2135, 3330 |
| HinfI | GANTC | 8 cut(s) | 960, 1028, 1160, 1795, 2247, 2509, 2948, 3256 |
| HpaI | GTTAAC | 1 cut(s) | 2274 |
| HphI | GGTGA | 6 cut(s) | 130, 259, 656, 1220, 1547, 2295 |
| Hpy99I | CGWCG | 1 cut(s) | 3120 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 700, 3043 |
| HpySE526I | ACGT | 3 cut(s) | 144, 700, 3043 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| HspAI | GCGC | 4 cut(s) | 33, 105, 910, 1394 |
| KasI | GGCGCC | 1 cut(s) | 32 |
| KflI | GGGWCCC | 1 cut(s) | 138 |
| Kpn2I | TCCGGA | 1 cut(s) | 2923 |
| KroI | GCCGGC | 2 cut(s) | 10, 130 |
| KroNI | GCCGGC | 2 cut(s) | 12, 132 |
| Ksp22I | TGATCA | 1 cut(s) | 1807 |
| KspAI | GTTAAC | 1 cut(s) | 2274 |
| LmnI | GCTCC | 7 cut(s) | 88, 609, 1093, 1304, 2255, 2884, 3047 |
| MabI | ACCWGGT | 2 cut(s) | 1243, 2152 |
| MaeII | ACGT | 3 cut(s) | 144, 700, 3043 |
| MaeIII | GTNAC | 6 cut(s) | 265, 746, 1081, 1440, 1824, 2447 |
| MfeI | CAATTG | 3 cut(s) | 1811, 2756, 2943 |
| MflI | RGATCY | 5 cut(s) | 361, 1228, 1366, 1941, 3059 |
| MhlI | GDGCHC | 3 cut(s) | 2986, 2995, 3099 |
| Mly113I | GGCGCC | 1 cut(s) | 33 |
| MlyI | GAGTC | 3 cut(s) | 1037, 1789, 2256 |
| MmeI | TCCRAC | 5 cut(s) | 2219, 2348, 2769, 3143, 3187 |
| Mph1103I | ATGCAT | 1 cut(s) | 759 |
| MroI | TCCGGA | 1 cut(s) | 2923 |
| MroNI | GCCGGC | 2 cut(s) | 10, 130 |
| MseI | TTAA | 6 cut(s) | 1185, 1569, 2082, 2273, 2372, 2529 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3189 |
| MspA1I | CMGCKG | 5 cut(s) | 115, 776, 2558, 2603, 3013 |
| MunI | CAATTG | 3 cut(s) | 1811, 2756, 2943 |
| Mva1269I | GAATGC | 1 cut(s) | 1152 |
| MvaI | CCWGG | 9 cut(s) | 529, 550, 1143, 1235, 1245, 1555, 1946, 2154, 2708 |
| NaeI | GCCGGC | 2 cut(s) | 12, 132 |
| NarI | GGCGCC | 1 cut(s) | 33 |
| NciI | CCSGG | 5 cut(s) | 86, 109, 136, 2176, 2269 |
| NcoI | CCATGG | 2 cut(s) | 1509, 2987 |
| NdeI | CATATG | 2 cut(s) | 2181, 2734 |
| NgoMIV | GCCGGC | 2 cut(s) | 10, 130 |
| NheI | GCTAGC | 1 cut(s) | 1295 |
| NlaIV | GGNNCC | 9 cut(s) | 34, 139, 140, 282, 611, 1230, 2286, 2357, 2994 |
| NmeAIII | GCCGAG | 1 cut(s) | 1354 |
| NmuCI | GTSAC | 2 cut(s) | 265, 746 |
| NsiI | ATGCAT | 1 cut(s) | 759 |
| NspI | RCATGY | 5 cut(s) | 278, 502, 910, 1276, 2848 |
| PaeI | GCATGC | 3 cut(s) | 278, 910, 2848 |
| PagI | TCATGA | 1 cut(s) | 3184 |
| PaqCI | CACCTGC | 1 cut(s) | 517 |
| PceI | AGGCCT | 1 cut(s) | 101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1023 |
| PctI | GAATGC | 1 cut(s) | 1152 |
| PdiI | GCCGGC | 2 cut(s) | 12, 132 |
| PfeI | GAWTC | 5 cut(s) | 960, 1160, 2509, 2948, 3256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2444 |
| PfoI | TCCNGGA | 1 cut(s) | 1944 |
| PleI | GAGTC | 3 cut(s) | 1036, 1789, 2255 |
| PluTI | GGCGCC | 1 cut(s) | 36 |
| PmaCI | CACGTG | 1 cut(s) | 145 |
| PmlI | CACGTG | 1 cut(s) | 145 |
| PpsI | GAGTC | 3 cut(s) | 1036, 1789, 2255 |
| Ppu21I | YACGTR | 1 cut(s) | 145 |
| PpuMI | RGGWCCY | 1 cut(s) | 138 |
| PsiI | TTATAA | 1 cut(s) | 2411 |
| Psp124BI | GAGCTC | 1 cut(s) | 3099 |
| Psp5II | RGGWCCY | 1 cut(s) | 138 |
| Psp6I | CCWGG | 9 cut(s) | 527, 548, 1141, 1233, 1243, 1553, 1944, 2152, 2706 |
| PspCI | CACGTG | 1 cut(s) | 145 |
| PspEI | GGTNACC | 1 cut(s) | 1440 |
| PspFI | CCCAGC | 1 cut(s) | 1037 |
| PspGI | CCWGG | 9 cut(s) | 527, 548, 1141, 1233, 1243, 1553, 1944, 2152, 2706 |
| PspN4I | GGNNCC | 9 cut(s) | 34, 139, 140, 282, 611, 1230, 2286, 2357, 2994 |
| PspPI | GGNCC | 9 cut(s) | 110, 138, 163, 280, 552, 1948, 1992, 2356, 3145 |
| PspPPI | RGGWCCY | 1 cut(s) | 138 |
| PstI | CTGCAG | 1 cut(s) | 781 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1912 |
| PsuI | RGATCY | 5 cut(s) | 361, 1228, 1366, 1941, 3059 |
| PvuII | CAGCTG | 2 cut(s) | 2558, 2603 |
| RsaI | GTAC | 7 cut(s) | 152, 327, 869, 941, 949, 1515, 1551 |
| RsaNI | GTAC | 7 cut(s) | 151, 326, 868, 940, 948, 1514, 1550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3189 |
| SacI | GAGCTC | 1 cut(s) | 3099 |
| SaqAI | TTAA | 6 cut(s) | 1185, 1569, 2082, 2273, 2372, 2529 |
| Sau96I | GGNCC | 9 cut(s) | 110, 138, 163, 280, 552, 1948, 1992, 2356, 3145 |
| ScaI | AGTACT | 1 cut(s) | 869 |
| SchI | GAGTC | 3 cut(s) | 1037, 1789, 2256 |
| SduI | GDGCHC | 3 cut(s) | 2986, 2995, 3099 |
| SexAI | ACCWGGT | 2 cut(s) | 1243, 2152 |
| SfcI | CTRYAG | 3 cut(s) | 777, 1421, 3063 |
| SfoI | GGCGCC | 1 cut(s) | 34 |
| SinI | GGWCC | 5 cut(s) | 138, 280, 552, 1948, 3145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3189 |
| SmlI | CTYRAG | 3 cut(s) | 513, 2416, 2770 |
| SmoI | CTYRAG | 3 cut(s) | 513, 2416, 2770 |
| SpeI | ACTAGT | 1 cut(s) | 3169 |
| SphI | GCATGC | 3 cut(s) | 278, 910, 2848 |
| SseBI | AGGCCT | 1 cut(s) | 101 |
| SspDI | GGCGCC | 1 cut(s) | 32 |
| SspI | AATATT | 1 cut(s) | 2089 |
| SstI | GAGCTC | 1 cut(s) | 3099 |
| StuI | AGGCCT | 1 cut(s) | 101 |
| StyI | CCWWGG | 8 cut(s) | 827, 1133, 1199, 1509, 2424, 2987, 3030, 3218 |
| TaiI | ACGT | 3 cut(s) | 147, 703, 3046 |
| TaqI | TCGA | 3 cut(s) | 1124, 2362, 2712 |
| TaqII | GACCGA | 1 cut(s) | 3162 |
| TatI | WGTACW | 3 cut(s) | 150, 867, 939 |
| TauI | GCSGC | 7 cut(s) | 38, 41, 115, 130, 776, 1132, 2128 |
| TfiI | GAWTC | 5 cut(s) | 960, 1160, 2509, 2948, 3256 |
| Tru1I | TTAA | 6 cut(s) | 1185, 1569, 2082, 2273, 2372, 2529 |
| Tru9I | TTAA | 6 cut(s) | 1185, 1569, 2082, 2273, 2372, 2529 |
| TscAI | CASTG | 9 cut(s) | 268, 427, 970, 1268, 1495, 1917, 2499, 2986, 3321 |
| TseFI | GTSAC | 2 cut(s) | 265, 746 |
| Tsp45I | GTSAC | 2 cut(s) | 265, 746 |
| TspGWI | ACGGA | 3 cut(s) | 33, 305, 548 |
| TspRI | CASTG | 9 cut(s) | 268, 427, 970, 1268, 1495, 1917, 2499, 2986, 3321 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2444 |
| VpaK11BI | GGWCC | 5 cut(s) | 138, 280, 552, 1948, 3145 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1449 |
| XapI | RAATTY | 6 cut(s) | 213, 845, 1282, 1561, 1783, 2863 |
| XbaI | TCTAGA | 2 cut(s) | 1171, 2219 |
| XceI | RCATGY | 5 cut(s) | 278, 502, 910, 1276, 2848 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1241 |
| XmaJI | CCTAGG | 2 cut(s) | 827, 1133 |
| XmiI | GTMKAC | 2 cut(s) | 1579, 3036 |
| ZrmI | AGTACT | 1 cut(s) | 869 |
| Zsp2I | ATGCAT | 1 cut(s) | 759 |