Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g06190 |
| malus_domestica | MD13G1234500.v1.1 MD16G1239300.v1.1 |
| prunus_persica | Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1 |
| pyrus_communis | pycom13g20640 pycom16g20020 |
| rosa_chinensis | RchiOBHm_Chr4g0397771 |
| rosa_laevigata | RLG00000009414 |
| rosa_multiflora | Rmu_sc0004527.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00342570 |
| rosa_rugosa | Rorug04G0004100 Rorug04G0004100 Rorug04G0004200 |
| rosa_samantha | Rh4AG080600 Rh4BG078200 Rh4DG073600 |
| rosa_wichuraiana | Rw4G006600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2540 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3067 |
| Acc36I | ACCTGC | 1 cut(s) | 1126 |
| AccB1I | GGYRCC | 2 cut(s) | 32, 3121 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2573 |
| AccBSI | CCGCTC | 1 cut(s) | 620 |
| AccI | GTMKAC | 2 cut(s) | 1702, 3165 |
| AclWI | GGATC | 5 cut(s) | 1091, 1346, 1359, 1497, 2903 |
| AcoI | YGGCCR | 2 cut(s) | 240, 879 |
| AcsI | RAATTY | 8 cut(s) | 68, 110, 321, 953, 1405, 1684, 1912, 2992 |
| AcuI | CTGAAG | 9 cut(s) | 500, 1062, 1225, 1754, 1988, 2604, 2628, 2712, 2952 |
| AcvI | CACGTG | 2 cut(s) | 159, 253 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 256 |
| AfaI | GTAC | 7 cut(s) | 260, 435, 977, 1064, 1072, 1638, 1674 |
| AflIII | ACRYGT | 2 cut(s) | 156, 158 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 666 |
| AjiI | CACGTC | 1 cut(s) | 809 |
| AjnI | CCWGG | 8 cut(s) | 635, 1264, 1356, 1366, 1676, 2073, 2281, 2835 |
| Alw21I | GWGCWC | 1 cut(s) | 3228 |
| Alw26I | GTCTC | 3 cut(s) | 365, 2109, 3420 |
| AlwI | GGATC | 5 cut(s) | 1091, 1346, 1359, 1497, 2903 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2041 |
| Ama87I | CYCGRG | 2 cut(s) | 92, 2116 |
| AoxI | GGCC | 9 cut(s) | 207, 218, 240, 271, 879, 1253, 2120, 2485, 2734 |
| ApoI | RAATTY | 8 cut(s) | 68, 110, 321, 953, 1405, 1684, 1912, 2992 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1592, 1624, 1879, 1911 |
| AspA2I | CCTAGG | 2 cut(s) | 935, 1256 |
| AspLEI | GCGC | 3 cut(s) | 35, 215, 1020 |
| AspS9I | GGNCC | 8 cut(s) | 218, 246, 388, 660, 2077, 2121, 2485, 3274 |
| AsuC2I | CCSGG | 8 cut(s) | 93, 94, 116, 194, 217, 244, 2305, 2398 |
| AsuHPI | GGTGA | 6 cut(s) | 238, 367, 764, 1343, 1670, 2424 |
| AsuNHI | GCTAGC | 1 cut(s) | 1418 |
| AvaI | CYCGRG | 2 cut(s) | 92, 2116 |
| AvaII | GGWCC | 5 cut(s) | 246, 388, 660, 2077, 3274 |
| AvrII | CCTAGG | 2 cut(s) | 935, 1256 |
| BaeGI | GKGCMC | 2 cut(s) | 3115, 3124 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1054, 1087, 1656, 1689 |
| BamHI | GGATCC | 1 cut(s) | 1351 |
| BanI | GGYRCC | 2 cut(s) | 32, 3121 |
| BanII | GRGCYC | 1 cut(s) | 3228 |
| BbrPI | CACGTG | 2 cut(s) | 159, 253 |
| Bbv12I | GWGCWC | 1 cut(s) | 3228 |
| BbvCI | CCTCAGC | 2 cut(s) | 1530, 1569 |
| BceAI | ACGGC | 1 cut(s) | 552 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 269, 303, 392, 426, 1139, 1173 |
| BciT130I | CCWGG | 8 cut(s) | 637, 1266, 1358, 1368, 1678, 2075, 2283, 2837 |
| BclI | TGATCA | 1 cut(s) | 1936 |
| BcnI | CCSGG | 8 cut(s) | 93, 94, 116, 194, 217, 244, 2305, 2398 |
| BcoDI | GTCTC | 3 cut(s) | 365, 2109, 3420 |
| BfmI | CTRYAG | 4 cut(s) | 885, 1544, 2255, 3192 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuAI | ACCTGC | 1 cut(s) | 1126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3119 |
| BglII | AGATCT | 2 cut(s) | 469, 3188 |
| BlnI | CCTAGG | 2 cut(s) | 935, 1256 |
| BlpI | GCTNAGC | 1 cut(s) | 3006 |
| BmcAI | AGTACT | 1 cut(s) | 977 |
| Bme18I | GGWCC | 5 cut(s) | 246, 388, 660, 2077, 3274 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 666 |
| BmeT110I | CYCGRG | 2 cut(s) | 92, 2116 |
| BmgBI | CACGTC | 1 cut(s) | 809 |
| BmgT120I | GGNCC | 8 cut(s) | 218, 246, 388, 660, 2077, 2121, 2485, 3274 |
| BmiI | GGNNCC | 9 cut(s) | 34, 247, 248, 390, 719, 1353, 2415, 2486, 3123 |
| BmrI | ACTGGG | 2 cut(s) | 2514, 3031 |
| BmtI | GCTAGC | 1 cut(s) | 1422 |
| BmuI | ACTGGG | 2 cut(s) | 2514, 3031 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1552, 1584 |
| BpmI | CTGGAG | 2 cut(s) | 2051, 2057 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1530, 1569 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3006 |
| BpuEI | CTTGAG | 4 cut(s) | 252, 606, 2530, 2920 |
| BpuMI | CCSGG | 8 cut(s) | 93, 94, 116, 194, 217, 244, 2305, 2398 |
| BsaAI | YACGTR | 2 cut(s) | 159, 253 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1095 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaWI | WCCGGW | 2 cut(s) | 499, 3212 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 162, 192, 3274, 3304 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 238 |
| Bse1I | ACTGG | 5 cut(s) | 528, 1384, 2332, 2509, 3037 |
| Bse3DI | GCAATG | 1 cut(s) | 3445 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1095 |
| BseBI | CCWGG | 8 cut(s) | 637, 1266, 1358, 1368, 1678, 2075, 2283, 2837 |
| BseJI | GATNNNNATC | 1 cut(s) | 1095 |
| BseMI | GCAATG | 1 cut(s) | 3445 |
| BseNI | ACTGG | 5 cut(s) | 528, 1384, 2332, 2509, 3037 |
| BseRI | GAGGAG | 2 cut(s) | 582, 3368 |
| BseSI | GKGCMC | 2 cut(s) | 3115, 3124 |
| BseX3I | CGGCCG | 1 cut(s) | 240 |
| BseYI | CCCAGC | 1 cut(s) | 1160 |
| BsgI | GTGCAG | 3 cut(s) | 183, 591, 2703 |
| Bsh1285I | CGRYCG | 1 cut(s) | 243 |
| BshFI | GGCC | 9 cut(s) | 209, 220, 242, 273, 881, 1255, 2122, 2487, 2736 |
| BshNI | GGYRCC | 2 cut(s) | 32, 3121 |
| BsiEI | CGRYCG | 1 cut(s) | 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3228 |
| BsiHKCI | CYCGRG | 2 cut(s) | 92, 2116 |
| BslFI | GGGAC | 8 cut(s) | 259, 696, 1160, 1212, 1708, 1729, 2328, 3376 |
| BsmAI | GTCTC | 3 cut(s) | 365, 2109, 3420 |
| BsmBI | CGTCTC | 1 cut(s) | 2109 |
| BsmFI | GGGAC | 8 cut(s) | 259, 696, 1160, 1212, 1708, 1729, 2328, 3376 |
| BsmI | GAATGC | 1 cut(s) | 1275 |
| BsnI | GGCC | 9 cut(s) | 209, 220, 242, 273, 881, 1255, 2122, 2487, 2736 |
| BsoBI | CYCGRG | 2 cut(s) | 92, 2116 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3115, 3124, 3228 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3006 |
| Bsp19I | CCATGG | 2 cut(s) | 1632, 3116 |
| BspANI | GGCC | 9 cut(s) | 209, 220, 242, 273, 881, 1255, 2122, 2487, 2736 |
| BspHI | TCATGA | 1 cut(s) | 3313 |
| BspLI | GGNNCC | 9 cut(s) | 34, 247, 248, 390, 719, 1353, 2415, 2486, 3123 |
| BspMAI | CTGCAG | 2 cut(s) | 889, 2259 |
| BspMI | ACCTGC | 1 cut(s) | 1126 |
| BspOI | GCTAGC | 1 cut(s) | 1422 |
| BspPI | GGATC | 5 cut(s) | 1091, 1346, 1359, 1497, 2903 |
| BspT107I | GGYRCC | 2 cut(s) | 32, 3121 |
| BsrBI | CCGCTC | 1 cut(s) | 620 |
| BsrDI | GCAATG | 1 cut(s) | 3445 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 238 |
| BsrI | ACTGG | 5 cut(s) | 528, 1384, 2332, 2509, 3037 |
| BssAI | RCCGGY | 2 cut(s) | 10, 238 |
| BssNAI | GTATAC | 1 cut(s) | 3166 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 8 cut(s) | 935, 1256, 1322, 1632, 2553, 3116, 3159, 3347 |
| Bst1107I | GTATAC | 1 cut(s) | 3166 |
| Bst2UI | CCWGG | 8 cut(s) | 637, 1266, 1358, 1368, 1678, 2075, 2283, 2837 |
| Bst6I | CTCTTC | 3 cut(s) | 731, 1038, 2971 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 893, 992, 2041, 2149, 2378 |
| BstBAI | YACGTR | 2 cut(s) | 159, 253 |
| BstDSI | CCRYGG | 2 cut(s) | 1632, 3116 |
| BstEII | GGTNACC | 1 cut(s) | 1563 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 3 cut(s) | 35, 215, 1020 |
| BstMAI | GTCTC | 3 cut(s) | 365, 2109, 3420 |
| BstMCI | CGRYCG | 1 cut(s) | 243 |
| BstNI | CCWGG | 8 cut(s) | 637, 1266, 1358, 1368, 1678, 2075, 2283, 2837 |
| BstNSI | RCATGY | 6 cut(s) | 386, 610, 865, 1018, 1399, 2977 |
| BstPI | GGTNACC | 1 cut(s) | 1563 |
| BstSFI | CTRYAG | 4 cut(s) | 885, 1544, 2255, 3192 |
| BstSLI | GKGCMC | 2 cut(s) | 3115, 3124 |
| BstX2I | RGATCY | 4 cut(s) | 469, 1351, 1489, 3188 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2231, 3044 |
| BstYI | RGATCY | 4 cut(s) | 469, 1351, 1489, 3188 |
| BstZ17I | GTATAC | 1 cut(s) | 3166 |
| BstZI | CGGCCG | 1 cut(s) | 240 |
| BsuRI | GGCC | 9 cut(s) | 209, 220, 242, 273, 881, 1255, 2122, 2487, 2736 |
| BtgI | CCRYGG | 2 cut(s) | 1632, 3116 |
| BtrI | CACGTC | 1 cut(s) | 809 |
| BtsI | GCAGTG | 2 cut(s) | 2039, 3450 |
| BtsIMutI | CAGTG | 9 cut(s) | 535, 1093, 1391, 1611, 2039, 2628, 2805, 3115, 3450 |
| BveI | ACCTGC | 1 cut(s) | 1126 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2041 |
| CciI | TCATGA | 1 cut(s) | 3313 |
| CfoI | GCGC | 3 cut(s) | 35, 215, 1020 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 238 |
| Cfr13I | GGNCC | 8 cut(s) | 218, 246, 388, 660, 2077, 2121, 2485, 3274 |
| Cfr9I | CCCGGG | 1 cut(s) | 92 |
| CseI | GACGC | 2 cut(s) | 461, 2091 |
| CsiI | ACCWGGT | 1 cut(s) | 2281 |
| Csp6I | GTAC | 7 cut(s) | 259, 434, 976, 1063, 1071, 1637, 1673 |
| CviQI | GTAC | 7 cut(s) | 259, 434, 976, 1063, 1071, 1637, 1673 |
| DinI | GGCGCC | 1 cut(s) | 34 |
| DraI | TTTAAA | 1 cut(s) | 1309 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3067 |
| DriI | GACNNNNNGTC | 1 cut(s) | 666 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3067 |
| EaeI | YGGCCR | 2 cut(s) | 240, 879 |
| EagI | CGGCCG | 1 cut(s) | 240 |
| Eam1104I | CTCTTC | 3 cut(s) | 731, 1038, 2971 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 666 |
| EarI | CTCTTC | 3 cut(s) | 731, 1038, 2971 |
| EciI | GGCGGA | 1 cut(s) | 183 |
| Ecl136II | GAGCTC | 1 cut(s) | 3226 |
| EclXI | CGGCCG | 1 cut(s) | 240 |
| Eco130I | CCWWGG | 8 cut(s) | 935, 1256, 1322, 1632, 2553, 3116, 3159, 3347 |
| Eco147I | AGGCCT | 1 cut(s) | 209 |
| Eco24I | GRGCYC | 1 cut(s) | 3228 |
| Eco47I | GGWCC | 5 cut(s) | 246, 388, 660, 2077, 3274 |
| Eco52I | CGGCCG | 1 cut(s) | 240 |
| Eco53kI | GAGCTC | 1 cut(s) | 3226 |
| Eco57I | CTGAAG | 9 cut(s) | 500, 1062, 1225, 1754, 1988, 2604, 2628, 2712, 2952 |
| Eco72I | CACGTG | 2 cut(s) | 159, 253 |
| Eco88I | CYCGRG | 2 cut(s) | 92, 2116 |
| Eco91I | GGTNACC | 1 cut(s) | 1563 |
| EcoICRI | GAGCTC | 1 cut(s) | 3226 |
| EcoO109I | RGGNCCY | 2 cut(s) | 246, 2121 |
| EcoO65I | GGTNACC | 1 cut(s) | 1563 |
| EcoRII | CCWGG | 8 cut(s) | 635, 1264, 1356, 1366, 1676, 2073, 2281, 2835 |
| EcoT14I | CCWWGG | 8 cut(s) | 935, 1256, 1322, 1632, 2553, 3116, 3159, 3347 |
| EcoT22I | ATGCAT | 1 cut(s) | 867 |
| EcoT38I | GRGCYC | 1 cut(s) | 3228 |
| EgeI | GGCGCC | 1 cut(s) | 34 |
| EheI | GGCGCC | 1 cut(s) | 34 |
| ErhI | CCWWGG | 8 cut(s) | 935, 1256, 1322, 1632, 2553, 3116, 3159, 3347 |
| Esp3I | CGTCTC | 1 cut(s) | 2109 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2640, 2672 |
| FaqI | GGGAC | 8 cut(s) | 259, 696, 1160, 1212, 1708, 1729, 2328, 3376 |
| FauI | CCCGC | 3 cut(s) | 572, 625, 1734 |
| FauNDI | CATATG | 2 cut(s) | 2310, 2863 |
| FbaI | TGATCA | 1 cut(s) | 1936 |
| FblI | GTMKAC | 2 cut(s) | 1702, 3165 |
| FriOI | GRGCYC | 1 cut(s) | 3228 |
| GlaI | GCGC | 3 cut(s) | 34, 214, 1019 |
| GsaI | CCCAGC | 1 cut(s) | 1164 |
| GsuI | CTGGAG | 2 cut(s) | 2051, 2057 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 9 cut(s) | 209, 220, 242, 273, 881, 1255, 2122, 2487, 2736 |
| HgaI | GACGC | 2 cut(s) | 461, 2091 |
| HhaI | GCGC | 3 cut(s) | 35, 215, 1020 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin6I | GCGC | 3 cut(s) | 33, 213, 1018 |
| HinP1I | GCGC | 3 cut(s) | 33, 213, 1018 |
| HincII | GTYRAC | 4 cut(s) | 154, 1155, 2403, 2781 |
| HindII | GTYRAC | 4 cut(s) | 154, 1155, 2403, 2781 |
| HindIII | AAGCTT | 4 cut(s) | 1375, 2000, 2264, 3459 |
| HinfI | GANTC | 9 cut(s) | 59, 1046, 1083, 1151, 1283, 1924, 2638, 3077, 3385 |
| HpaI | GTTAAC | 1 cut(s) | 2403 |
| HphI | GGTGA | 6 cut(s) | 238, 367, 764, 1343, 1670, 2424 |
| Hpy99I | CGWCG | 1 cut(s) | 3249 |
| HpyAV | CCTTC | 9 cut(s) | 374, 673, 925, 1053, 1342, 1458, 1820, 2628, 3254 |
| HpyCH4IV | ACGT | 4 cut(s) | 158, 252, 808, 3172 |
| HpySE526I | ACGT | 4 cut(s) | 158, 252, 808, 3172 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| HspAI | GCGC | 3 cut(s) | 33, 213, 1018 |
| KasI | GGCGCC | 1 cut(s) | 32 |
| KflI | GGGWCCC | 1 cut(s) | 246 |
| KroI | GCCGGC | 2 cut(s) | 10, 238 |
| KroNI | GCCGGC | 2 cut(s) | 12, 240 |
| Ksp22I | TGATCA | 1 cut(s) | 1936 |
| KspAI | GTTAAC | 1 cut(s) | 2403 |
| LmnI | GCTCC | 8 cut(s) | 196, 717, 1216, 1427, 2076, 2384, 3013, 3176 |
| MabI | ACCWGGT | 1 cut(s) | 2281 |
| MaeII | ACGT | 4 cut(s) | 158, 252, 808, 3172 |
| MaeIII | GTNAC | 7 cut(s) | 137, 373, 854, 1204, 1563, 2576, 3058 |
| MbiI | CCGCTC | 1 cut(s) | 620 |
| MfeI | CAATTG | 3 cut(s) | 1940, 2885, 3072 |
| MflI | RGATCY | 4 cut(s) | 469, 1351, 1489, 3188 |
| MhlI | GDGCHC | 3 cut(s) | 3115, 3124, 3228 |
| Mly113I | GGCGCC | 1 cut(s) | 33 |
| MlyI | GAGTC | 4 cut(s) | 1055, 1160, 1918, 3071 |
| MmeI | TCCRAC | 6 cut(s) | 2348, 2477, 2898, 3272, 3316, 3430 |
| Mph1103I | ATGCAT | 1 cut(s) | 867 |
| MroNI | GCCGGC | 2 cut(s) | 10, 238 |
| MseI | TTAA | 7 cut(s) | 1308, 1692, 1955, 2211, 2402, 2501, 2658 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3318 |
| MspA1I | CMGCKG | 6 cut(s) | 223, 884, 2254, 2687, 2732, 3142 |
| MunI | CAATTG | 3 cut(s) | 1940, 2885, 3072 |
| Mva1269I | GAATGC | 1 cut(s) | 1275 |
| MvaI | CCWGG | 8 cut(s) | 637, 1266, 1358, 1368, 1678, 2075, 2283, 2837 |
| NaeI | GCCGGC | 2 cut(s) | 12, 240 |
| NarI | GGCGCC | 1 cut(s) | 33 |
| NciI | CCSGG | 8 cut(s) | 93, 94, 116, 194, 217, 244, 2305, 2398 |
| NcoI | CCATGG | 2 cut(s) | 1632, 3116 |
| NdeI | CATATG | 2 cut(s) | 2310, 2863 |
| NgoMIV | GCCGGC | 2 cut(s) | 10, 238 |
| NheI | GCTAGC | 1 cut(s) | 1418 |
| NlaIV | GGNNCC | 9 cut(s) | 34, 247, 248, 390, 719, 1353, 2415, 2486, 3123 |
| NmeAIII | GCCGAG | 1 cut(s) | 1477 |
| NmuCI | GTSAC | 4 cut(s) | 137, 373, 854, 3058 |
| NsiI | ATGCAT | 1 cut(s) | 867 |
| NspI | RCATGY | 6 cut(s) | 386, 610, 865, 1018, 1399, 2977 |
| PaeI | GCATGC | 4 cut(s) | 386, 865, 1018, 2977 |
| PagI | TCATGA | 1 cut(s) | 3313 |
| PceI | AGGCCT | 1 cut(s) | 209 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1146 |
| PctI | GAATGC | 1 cut(s) | 1275 |
| PdiI | GCCGGC | 2 cut(s) | 12, 240 |
| PfeI | GAWTC | 5 cut(s) | 59, 1083, 1283, 2638, 3385 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2573 |
| PfoI | TCCNGGA | 2 cut(s) | 114, 2073 |
| PleI | GAGTC | 4 cut(s) | 1054, 1159, 1918, 3071 |
| PluTI | GGCGCC | 1 cut(s) | 36 |
| PmaCI | CACGTG | 2 cut(s) | 159, 253 |
| PmlI | CACGTG | 2 cut(s) | 159, 253 |
| PpsI | GAGTC | 4 cut(s) | 1054, 1159, 1918, 3071 |
| Ppu21I | YACGTR | 2 cut(s) | 159, 253 |
| PpuMI | RGGWCCY | 1 cut(s) | 246 |
| PsiI | TTATAA | 1 cut(s) | 2540 |
| Psp124BI | GAGCTC | 1 cut(s) | 3228 |
| Psp5II | RGGWCCY | 1 cut(s) | 246 |
| Psp6I | CCWGG | 8 cut(s) | 635, 1264, 1356, 1366, 1676, 2073, 2281, 2835 |
| PspCI | CACGTG | 2 cut(s) | 159, 253 |
| PspEI | GGTNACC | 1 cut(s) | 1563 |
| PspFI | CCCAGC | 1 cut(s) | 1160 |
| PspGI | CCWGG | 8 cut(s) | 635, 1264, 1356, 1366, 1676, 2073, 2281, 2835 |
| PspN4I | GGNNCC | 9 cut(s) | 34, 247, 248, 390, 719, 1353, 2415, 2486, 3123 |
| PspPI | GGNCC | 8 cut(s) | 218, 246, 388, 660, 2077, 2121, 2485, 3274 |
| PspPPI | RGGWCCY | 1 cut(s) | 246 |
| PstI | CTGCAG | 2 cut(s) | 889, 2259 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2041 |
| PsuI | RGATCY | 4 cut(s) | 469, 1351, 1489, 3188 |
| PvuII | CAGCTG | 3 cut(s) | 2254, 2687, 2732 |
| RsaI | GTAC | 7 cut(s) | 260, 435, 977, 1064, 1072, 1638, 1674 |
| RsaNI | GTAC | 7 cut(s) | 259, 434, 976, 1063, 1071, 1637, 1673 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3318 |
| SacI | GAGCTC | 1 cut(s) | 3228 |
| SaqAI | TTAA | 7 cut(s) | 1308, 1692, 1955, 2211, 2402, 2501, 2658 |
| Sau96I | GGNCC | 8 cut(s) | 218, 246, 388, 660, 2077, 2121, 2485, 3274 |
| ScaI | AGTACT | 1 cut(s) | 977 |
| SchI | GAGTC | 4 cut(s) | 1055, 1160, 1918, 3071 |
| SduI | GDGCHC | 3 cut(s) | 3115, 3124, 3228 |
| SexAI | ACCWGGT | 1 cut(s) | 2281 |
| SfcI | CTRYAG | 4 cut(s) | 885, 1544, 2255, 3192 |
| SfoI | GGCGCC | 1 cut(s) | 34 |
| SinI | GGWCC | 5 cut(s) | 246, 388, 660, 2077, 3274 |
| SmaI | CCCGGG | 1 cut(s) | 94 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3318 |
| SmlI | CTYRAG | 4 cut(s) | 267, 621, 2545, 2899 |
| SmoI | CTYRAG | 4 cut(s) | 267, 621, 2545, 2899 |
| SphI | GCATGC | 4 cut(s) | 386, 865, 1018, 2977 |
| SseBI | AGGCCT | 1 cut(s) | 209 |
| SspDI | GGCGCC | 1 cut(s) | 32 |
| SspI | AATATT | 1 cut(s) | 2218 |
| SstI | GAGCTC | 1 cut(s) | 3228 |
| StuI | AGGCCT | 1 cut(s) | 209 |
| StyI | CCWWGG | 8 cut(s) | 935, 1256, 1322, 1632, 2553, 3116, 3159, 3347 |
| TaiI | ACGT | 4 cut(s) | 161, 255, 811, 3175 |
| TaqI | TCGA | 2 cut(s) | 2491, 2841 |
| TaqII | GACCGA | 1 cut(s) | 3291 |
| TatI | WGTACW | 2 cut(s) | 258, 975 |
| TauI | GCSGC | 6 cut(s) | 38, 41, 223, 238, 884, 1255 |
| TfiI | GAWTC | 5 cut(s) | 59, 1083, 1283, 2638, 3385 |
| Tru1I | TTAA | 7 cut(s) | 1308, 1692, 1955, 2211, 2402, 2501, 2658 |
| Tru9I | TTAA | 7 cut(s) | 1308, 1692, 1955, 2211, 2402, 2501, 2658 |
| TscAI | CASTG | 9 cut(s) | 535, 1093, 1391, 1618, 2046, 2628, 2805, 3115, 3450 |
| TseFI | GTSAC | 4 cut(s) | 137, 373, 854, 3058 |
| Tsp45I | GTSAC | 4 cut(s) | 137, 373, 854, 3058 |
| TspGWI | ACGGA | 3 cut(s) | 33, 74, 656 |
| TspMI | CCCGGG | 1 cut(s) | 92 |
| TspRI | CASTG | 9 cut(s) | 535, 1093, 1391, 1618, 2046, 2628, 2805, 3115, 3450 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2573 |
| VpaK11BI | GGWCC | 5 cut(s) | 246, 388, 660, 2077, 3274 |
| XapI | RAATTY | 8 cut(s) | 68, 110, 321, 953, 1405, 1684, 1912, 2992 |
| XbaI | TCTAGA | 2 cut(s) | 1294, 2348 |
| XceI | RCATGY | 6 cut(s) | 386, 610, 865, 1018, 1399, 2977 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1364, 1684 |
| XmaI | CCCGGG | 1 cut(s) | 92 |
| XmaJI | CCTAGG | 2 cut(s) | 935, 1256 |
| XmiI | GTMKAC | 2 cut(s) | 1702, 3165 |
| ZrmI | AGTACT | 1 cut(s) | 977 |
| Zsp2I | ATGCAT | 1 cut(s) | 867 |