Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Reverse (-)

16739426 .. 16746800

Gene Structure 7375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGAAGCAGCCGGCGAACGGAGGTTCGTCCGGCGCCGCCGCACTCAATTCCGGCGAAGGCGGAGAGAACGTGAAGATCATAAACCCGGAGCTGTGGCAGGCCTGCGCCGGGCCGCTGGTGAACTTGCCGCCGGCCGGGACCCACGTGGTGTACTTCCCTCAAGGCCACAGCGAACAGGTTGCTGCTTCTATGAAAAAGGATGTTGATGCTCAAATTCCAAACTATCCAAATCTTCCCTCCAAGCTGCTATGTCTTCTTCACAATGTTACCTTGCATGCGGACCCCGAAACGGACGAAGTTTATGCTCAGATGACACTTCAACCTGTACCCTCATTTGACAAGGACGCATTATTGAGATCAGATCTTGCCCTGAAGTCCAATAAGCCCCAACCGGAGTTTTTCTGTAAAACATTGACTGCCAGTGATACAAGCACTCATGGAGGTTTCTCTGTTCCCCGCCGTGCAGCAGAGAAGATTTTTCCTCCTCTTGATTTCAACATGCAACCACCTGCTCAAGAACTCGCTGCCAGGGATTTGCATGATACTGTTTGGACCTTCCGTCATATCTATCGGGGACAACCAAAACGCCACTTGCTTACGACAGGATGGAGCCTATTTGTTAGTGGGAAGAGGCTTTTTGCTGGTGATGCTGTCTTGTTCATCAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGACGTGCTAACAGGCAACCAACCAACCTATCATCGTCAGTTTTGTCAAGTGACAGTATGCATATTGGGATTTTGGCCGCTGCAGCTCATGCTGCTGCGAACAATAGCCCCTTCACTGTGTTCTATAATCCTAGGGCTAGTCCATCAGAATTTGTTATCCCTTTGGCTAAGTACTACAAGGCAGTTTGTGCGAACCAACTATCATTGGGCATGCGCTTTCGTATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGTACATGGGTACAATTACAGGAATCAGTGATCTTGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTCGGTTGGGACGAGTCAACTGCTGGGGAAAGGCGTAATCGGGTATCAATCTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCATCTGCCCCCCACCATTCTTCAGGTCGAAGCGGCCTAGGCAACCAGGAATGCCAGATGATGAATCCTCTGATCTAGATAACCTTTTTAAAAGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAGGTGCTACCTGGTCTAAGCTTAGTCCAGTGGATGAACATGCAGCAAAATTCTTCTGTGGCTAGCTCCATGCAGCCAAATTATATGCACCCTTCATTTTCTGGTTCTGTTATGCAAAACCTTGCTGGTGTGGATCTTTCTCGGCAGATGGGCTTGTCAGCGCCTCAAATACCTCAGCCAAATAATCTACAGTTCAATGCTCAGAGGTTACCTCAGCAAGTGCAACAGCTTGACCAACTACCTAATATGCAGTCCACTGTGAACCCAATAGCATCCATGGTACAACGACAGCAACAGTTGGGTGATATGACACAAGTACCCAGGCAAAATTTGGTTAATCAAAGTCTACCGTCCAGCCAAGCTCAGTCCCCACTTCTGCAACCTCAGTCCCTTGCCCAAGCTAACAGTATTCTTCAGCAGCAATCATCTACTCAAAATCAACTTCAAAGAAACCTTCCTCAGAACTTGCAGCAGCACCAACAACAACAACAGCAACAACATCAACAGCAGCAGCAGCAGCAGCATCAACAACAAAATGTGGGTCAAAATCAACAGCAAAATTTTATTCAGACTCCACAGCCTGATCAATTGAACCAACAATTACACCATCTTTCTGATAATCCGCTTCAACTTCAACTATTACAGAAGCTTCAGCAGCACCAGCAATCATACCTCGCACAGCAGGCACTGCAACAACAGCCTACTCAACTTCTCCAGCTCCAGGACCAGCAGAGGCATCTGTTAGATGCGTCTCAGAGCTTCCCGAGGCCTTCAACTCCTAGCCAAATGCAAGATATGCCTCTATCAGCACCGACCTCACATCCTCAGTCAAGAGCTATGCCACAGCAGATGACTGTTAATAATATTAGCCAACCTAGTGGTCGGTTCTTGCATCCACAGCCGCAGCCAAAGCTTCAACAGCAGCAACCTGGTATGCTGGCTGAAATGTCCGGGCATATGGGACTTCCTCCAACTGGAACAACCAATCAGCTCTCTAGAGCTGGTAGCGGTATTATGGCAGGAGTTGCAGGAGCAGGGCAGTCCGGGTTAACAGATGAGGTTCCATCATGTTCCACTTCACCCTCCGCAAACAACTGTCCAACCGTAATTCAACCATTGATGAACAACAGGGGCCATCGAAACTCATTAACTGGGGAGGACATAGCTCAGTCTGCCAACATGGTTATAAGCTCAAGTGCCTTGGAAACAATGCCATCTAATGGCAACTTAGTGAAAGGGTTTCAGCATAAGTCTGAAGTCAAGCCTTCAGTGAACATCACTAGGAATCAAAGTCAAGGGATGCTTAACCCACAAACATACCTGAATGGTGCAGCTGCCCAAACAGATTACTTGGACACTTCATCTTCAACAACTTCAGCTGGCCTCTCTCAGAATGATGTCCATTTACAGCACAATAATACCCCGTTGACTTTCAATCCACAGTCAATGTTGTTCAGAGAACCTAGTCAAGAAGTGGAAGTCCAGGTCGATCAGAGAAACAATGTTTCATATGGTTCTAACATTGATAGCCAATTGGGAATACCCTTGAGTTCTGATCCTTTGTTGGAAAAGGGCATGGTGGGGATAGGAAAGGATTTTACAAATAACCTCTCTTCAGGCATGCTTGGCAACTTTGAAAATTCAAAAGATGCTCAGCAGGAGCTTTCTTCTTCAATGGTTTCCCAGTCCTTTGGAGTTCCAGATATGACATTTCAGTCAATTGACTCCACTATAAATGACAGCAGTTTTCTGGACAGTGCCCCATGGGCACCAGCAGCACAATTTCAGCGGATGCGGACATACACCAAGGTATACAAACGTGGAGCTGTTGGGAGATCTATAGATATTACACGCTATTCCGGTTATGATGAGCTCAAACATGATCTGGCTCGTCGGTTTGGCATAGAAGGACAGCTAGAGGACCGAGGGAGAGTAGGTTGGAAACTAGTTTATGTAGATCATGAGAGTGATGTTCTGCTAGTTGGAGATGACCCTTGGGAGGAGTTCGTGAACTGTGTTCGGTGCATCAAGATTCTGTCCCCACAAGAAGTCCAGCAGATGAGCTTGGATGGAGACTTTGGGGGCAACGCAGTGCTTCCAAATCAAGCTTGCAGCAGCTCGGACGGTGGAAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1128

Amino Acids

124.8

Weight (kDa)

6.2

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	134 - 236	1e-19	B3 DNA binding domain
ARF_AD	PF06507	283 - 366	3e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	1014 - 1100	1.3e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2435
AarI	CACCTGC	1 cut(s)	517
AasI	GACNNNNNNGTC	1 cut(s)	2962
Acc36I	ACCTGC	2 cut(s)	517, 1018
AccB1I	GGYRCC	2 cut(s)	32, 3016
AccB7I	CCANNNNNTGG	1 cut(s)	2468
AccI	GTMKAC	2 cut(s)	1594, 3060
AclWI	GGATC	5 cut(s)	983, 1238, 1251, 1389, 2798
AcoI	YGGCCR	2 cut(s)	132, 771
AcsI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1807, 2887
AcuI	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1883, 2499, 2523, 2607, 2847
AcvI	CACGTG	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	7 cut(s)	152, 327, 869, 956, 964, 1530, 1566
AfiI	CCNNNNNNNGG	9 cut(s)	17, 108, 134, 289, 1220, 1969, 2222, 2468, 3247
AhdI	GACNNNNNGTC	1 cut(s)	558
AhlI	ACTAGT	1 cut(s)	3193
AjiI	CACGTC	1 cut(s)	701
AjnI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1968, 2176, 2730
Alw21I	GWGCWC	1 cut(s)	3123
Alw26I	GTCTC	2 cut(s)	2004, 3315
AlwI	GGATC	5 cut(s)	983, 1238, 1251, 1389, 2798
AlwNI	CAGNNNCTG	1 cut(s)	1936
Ama87I	CYCGRG	1 cut(s)	2011
AoxI	GGCC	9 cut(s)	99, 110, 132, 163, 771, 1145, 2015, 2380, 2629
ApoI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1807, 2887
ArsI	GACNNNNNNTTYG	2 cut(s)	1774, 1806
AspA2I	CCTAGG	2 cut(s)	827, 1148
AspLEI	GCGC	4 cut(s)	35, 107, 912, 1411
AspS9I	GGNCC	7 cut(s)	110, 138, 280, 552, 1972, 2380, 3169
AsuC2I	CCSGG	5 cut(s)	86, 109, 136, 2200, 2293
AsuHPI	GGTGA	5 cut(s)	130, 656, 1235, 1562, 2319
AsuNHI	GCTAGC	1 cut(s)	1310
AvaI	CYCGRG	1 cut(s)	2011
AvaII	GGWCC	5 cut(s)	138, 280, 552, 1972, 3169
AvrII	CCTAGG	2 cut(s)	827, 1148
BaeGI	GKGCMC	2 cut(s)	3010, 3019
BaeI	ACNNNNGTAYC	4 cut(s)	946, 979, 1548, 1581
BamHI	GGATCC	1 cut(s)	1243
BanI	GGYRCC	2 cut(s)	32, 3016
BanII	GRGCYC	1 cut(s)	3123
BbrPI	CACGTG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	3123
BbvCI	CCTCAGC	2 cut(s)	1422, 1461
BccI	CCATC	9 cut(s)	600, 847, 993, 1390, 1863, 2320, 2391, 2470, 3311
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	6 cut(s)	161, 195, 284, 318, 1031, 1065
BciT130I	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1970, 2178, 2732
BclI	TGATCA	1 cut(s)	1831
BcnI	CCSGG	5 cut(s)	86, 109, 136, 2200, 2293
BcoDI	GTCTC	2 cut(s)	2004, 3315
BcuI	ACTAGT	1 cut(s)	3193
BfmI	CTRYAG	3 cut(s)	777, 1436, 3087
BfoI	RGCGCY	2 cut(s)	36, 1412
BfuAI	ACCTGC	2 cut(s)	517, 1018
BglI	GCCNNNNNGGC	1 cut(s)	3014
BglII	AGATCT	2 cut(s)	361, 3083
BlnI	CCTAGG	2 cut(s)	827, 1148
BlpI	GCTNAGC	1 cut(s)	2901
BmcAI	AGTACT	1 cut(s)	869
Bme18I	GGWCC	5 cut(s)	138, 280, 552, 1972, 3169
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	2011
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	7 cut(s)	110, 138, 280, 552, 1972, 2380, 3169
BmiI	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2310, 2381, 3018
BmrI	ACTGGG	2 cut(s)	2409, 2926
BmtI	GCTAGC	1 cut(s)	1314
BmuI	ACTGGG	2 cut(s)	2409, 2926
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
BpmI	CTGGAG	2 cut(s)	1946, 1952
Bpu10I	CCTNAGC	2 cut(s)	1422, 1461
Bpu1102I	GCTNAGC	1 cut(s)	2901
BpuEI	CTTGAG	4 cut(s)	144, 498, 2425, 2815
BpuMI	CCSGG	5 cut(s)	86, 109, 136, 2200, 2293
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	391, 3107
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 3169, 3199
Bsc4I	CCNNNNNNNGG	9 cut(s)	17, 108, 134, 289, 1220, 1969, 2222, 2468, 3247
Bse118I	RCCGGY	2 cut(s)	10, 130
Bse1I	ACTGG	5 cut(s)	420, 1276, 2227, 2404, 2932
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1970, 2178, 2732
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	9 cut(s)	17, 108, 134, 289, 1220, 1969, 2222, 2468, 3247
BseNI	ACTGG	5 cut(s)	420, 1276, 2227, 2404, 2932
BseRI	GAGGAG	2 cut(s)	474, 3263
BseSI	GKGCMC	2 cut(s)	3010, 3019
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	1052
BsgI	GTGCAG	2 cut(s)	483, 2598
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2017, 2382, 2631
BshNI	GGYRCC	2 cut(s)	32, 3016
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	3123
BsiHKCI	CYCGRG	1 cut(s)	2011
BslFI	GGGAC	7 cut(s)	151, 588, 1052, 1600, 1621, 2223, 3271
BslI	CCNNNNNNNGG	9 cut(s)	17, 108, 134, 289, 1220, 1969, 2222, 2468, 3247
BsmAI	GTCTC	2 cut(s)	2004, 3315
BsmBI	CGTCTC	1 cut(s)	2004
BsmFI	GGGAC	7 cut(s)	151, 588, 1052, 1600, 1621, 2223, 3271
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2017, 2382, 2631
BsoBI	CYCGRG	1 cut(s)	2011
Bsp1286I	GDGCHC	3 cut(s)	3010, 3019, 3123
Bsp1720I	GCTNAGC	1 cut(s)	2901
Bsp19I	CCATGG	2 cut(s)	1524, 3011
BspANI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2017, 2382, 2631
BspHI	TCATGA	1 cut(s)	3208
BspLI	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2310, 2381, 3018
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	517, 1018
BspOI	GCTAGC	1 cut(s)	1314
BspPI	GGATC	5 cut(s)	983, 1238, 1251, 1389, 2798
BspT107I	GGYRCC	2 cut(s)	32, 3016
BsrFI	RCCGGY	2 cut(s)	10, 130
BsrI	ACTGG	5 cut(s)	420, 1276, 2227, 2404, 2932
BssAI	RCCGGY	2 cut(s)	10, 130
BssNAI	GTATAC	1 cut(s)	3061
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2448, 3011, 3054, 3242
Bst1107I	GTATAC	1 cut(s)	3061
Bst2UI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1970, 2178, 2732
Bst6I	CTCTTC	3 cut(s)	623, 930, 2866
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	5 cut(s)	785, 884, 1936, 2044, 2273
BstBAI	YACGTR	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	1524, 3011
BstEII	GGTNACC	1 cut(s)	1455
BstH2I	RGCGCY	2 cut(s)	36, 1412
BstHHI	GCGC	4 cut(s)	35, 107, 912, 1411
BstMAI	GTCTC	2 cut(s)	2004, 3315
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1970, 2178, 2732
BstNSI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2872
BstPI	GGTNACC	1 cut(s)	1455
BstSFI	CTRYAG	3 cut(s)	777, 1436, 3087
BstSLI	GKGCMC	2 cut(s)	3010, 3019
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	4 cut(s)	361, 1243, 1381, 3083
BstXI	CCANNNNNNTGG	2 cut(s)	2126, 2939
BstYI	RGATCY	4 cut(s)	361, 1243, 1381, 3083
BstZ17I	GTATAC	1 cut(s)	3061
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2017, 2382, 2631
BtgI	CCRYGG	2 cut(s)	1524, 3011
BtrI	CACGTC	1 cut(s)	701
BtsI	GCAGTG	2 cut(s)	1934, 3345
BtsIMutI	CAGTG	9 cut(s)	427, 810, 985, 1283, 1503, 1934, 2523, 3010, 3345
BveI	ACCTGC	2 cut(s)	517, 1018
CaiI	CAGNNNCTG	1 cut(s)	1936
CciI	TCATGA	1 cut(s)	3208
CfoI	GCGC	4 cut(s)	35, 107, 912, 1411
Cfr10I	RCCGGY	2 cut(s)	10, 130
Cfr13I	GGNCC	7 cut(s)	110, 138, 280, 552, 1972, 2380, 3169
CseI	GACGC	2 cut(s)	353, 1986
CsiI	ACCWGGT	2 cut(s)	1258, 2176
Csp6I	GTAC	7 cut(s)	151, 326, 868, 955, 963, 1529, 1565
CviQI	GTAC	7 cut(s)	151, 326, 868, 955, 963, 1529, 1565
DinI	GGCGCC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	1201
DraIII	CACNNNGTG	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	2962
DriI	GACNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	2962
EaeI	YGGCCR	2 cut(s)	132, 771
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	623, 930, 2866
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	3 cut(s)	623, 930, 2866
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	3121
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2448, 3011, 3054, 3242
Eco147I	AGGCCT	2 cut(s)	101, 2017
Eco24I	GRGCYC	1 cut(s)	3123
Eco47I	GGWCC	5 cut(s)	138, 280, 552, 1972, 3169
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	3121
Eco57I	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1883, 2499, 2523, 2607, 2847
Eco72I	CACGTG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	2011
Eco91I	GGTNACC	1 cut(s)	1455
EcoICRI	GAGCTC	1 cut(s)	3121
EcoO109I	RGGNCCY	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	1455
EcoRII	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1968, 2176, 2730
EcoT14I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2448, 3011, 3054, 3242
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	3123
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2448, 3011, 3054, 3242
Esp3I	CGTCTC	1 cut(s)	2004
FalI	AAGNNNNNCTT	2 cut(s)	2535, 2567
FaqI	GGGAC	7 cut(s)	151, 588, 1052, 1600, 1621, 2223, 3271
FauI	CCCGC	1 cut(s)	464
FauNDI	CATATG	2 cut(s)	2205, 2758
FbaI	TGATCA	1 cut(s)	1831
FblI	GTMKAC	2 cut(s)	1594, 3060
FriOI	GRGCYC	1 cut(s)	3123
GlaI	GCGC	4 cut(s)	34, 106, 911, 1410
GsaI	CCCAGC	1 cut(s)	1056
GsuI	CTGGAG	2 cut(s)	1946, 1952
HaeII	RGCGCY	2 cut(s)	36, 1412
HaeIII	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2017, 2382, 2631
HgaI	GACGC	2 cut(s)	353, 1986
HhaI	GCGC	4 cut(s)	35, 107, 912, 1411
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	4 cut(s)	33, 105, 910, 1409
HinP1I	GCGC	4 cut(s)	33, 105, 910, 1409
HincII	GTYRAC	3 cut(s)	1047, 2298, 2676
HindII	GTYRAC	3 cut(s)	1047, 2298, 2676
HindIII	AAGCTT	4 cut(s)	1267, 1895, 2159, 3354
HinfI	GANTC	8 cut(s)	938, 975, 1043, 1175, 1819, 2533, 2972, 3280
HpaI	GTTAAC	1 cut(s)	2298
HphI	GGTGA	5 cut(s)	130, 656, 1235, 1562, 2319
Hpy99I	CGWCG	1 cut(s)	3144
HpyCH4IV	ACGT	4 cut(s)	69, 144, 700, 3067
HpySE526I	ACGT	4 cut(s)	69, 144, 700, 3067
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	4 cut(s)	33, 105, 910, 1409
KasI	GGCGCC	1 cut(s)	32
KflI	GGGWCCC	1 cut(s)	138
KroI	GCCGGC	2 cut(s)	10, 130
KroNI	GCCGGC	2 cut(s)	12, 132
Ksp22I	TGATCA	1 cut(s)	1831
KspAI	GTTAAC	1 cut(s)	2298
LmnI	GCTCC	8 cut(s)	88, 609, 1108, 1319, 1971, 2279, 2908, 3071
MabI	ACCWGGT	2 cut(s)	1258, 2176
MaeII	ACGT	4 cut(s)	69, 144, 700, 3067
MaeIII	GTNAC	4 cut(s)	265, 746, 1096, 1455
MfeI	CAATTG	3 cut(s)	1835, 2780, 2967
MflI	RGATCY	4 cut(s)	361, 1243, 1381, 3083
MhlI	GDGCHC	3 cut(s)	3010, 3019, 3123
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	4 cut(s)	947, 1052, 1813, 2966
MmeI	TCCRAC	5 cut(s)	2243, 2372, 2793, 3167, 3211
Mph1103I	ATGCAT	1 cut(s)	759
MroNI	GCCGGC	2 cut(s)	10, 130
MseI	TTAA	6 cut(s)	1200, 1584, 2106, 2297, 2396, 2553
MslI	CAYNNNNRTG	1 cut(s)	3213
MspA1I	CMGCKG	5 cut(s)	115, 776, 2582, 2627, 3037
MunI	CAATTG	3 cut(s)	1835, 2780, 2967
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1970, 2178, 2732
NaeI	GCCGGC	2 cut(s)	12, 132
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	5 cut(s)	86, 109, 136, 2200, 2293
NcoI	CCATGG	2 cut(s)	1524, 3011
NdeI	CATATG	2 cut(s)	2205, 2758
NgoMIV	GCCGGC	2 cut(s)	10, 130
NheI	GCTAGC	1 cut(s)	1310
NlaIV	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2310, 2381, 3018
NmeAIII	GCCGAG	1 cut(s)	1369
NmuCI	GTSAC	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	759
NspI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2872
PaeI	GCATGC	3 cut(s)	278, 910, 2872
PagI	TCATGA	1 cut(s)	3208
PaqCI	CACCTGC	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	101, 2017
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PctI	GAATGC	1 cut(s)	1167
PdiI	GCCGGC	2 cut(s)	12, 132
PfeI	GAWTC	4 cut(s)	975, 1175, 2533, 3280
PflMI	CCANNNNNTGG	1 cut(s)	2468
PfoI	TCCNGGA	1 cut(s)	1968
PleI	GAGTC	4 cut(s)	946, 1051, 1813, 2966
PluTI	GGCGCC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	4 cut(s)	946, 1051, 1813, 2966
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	2435
Psp124BI	GAGCTC	1 cut(s)	3123
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1968, 2176, 2730
PspCI	CACGTG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	1455
PspFI	CCCAGC	1 cut(s)	1052
PspGI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1968, 2176, 2730
PspN4I	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2310, 2381, 3018
PspPI	GGNCC	7 cut(s)	110, 138, 280, 552, 1972, 2380, 3169
PspPPI	RGGWCCY	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	1936
PsuI	RGATCY	4 cut(s)	361, 1243, 1381, 3083
PvuII	CAGCTG	2 cut(s)	2582, 2627
RsaI	GTAC	7 cut(s)	152, 327, 869, 956, 964, 1530, 1566
RsaNI	GTAC	7 cut(s)	151, 326, 868, 955, 963, 1529, 1565
RseI	CAYNNNNRTG	1 cut(s)	3213
SacI	GAGCTC	1 cut(s)	3123
SaqAI	TTAA	6 cut(s)	1200, 1584, 2106, 2297, 2396, 2553
Sau96I	GGNCC	7 cut(s)	110, 138, 280, 552, 1972, 2380, 3169
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	4 cut(s)	947, 1052, 1813, 2966
SduI	GDGCHC	3 cut(s)	3010, 3019, 3123
SexAI	ACCWGGT	2 cut(s)	1258, 2176
SfcI	CTRYAG	3 cut(s)	777, 1436, 3087
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	5 cut(s)	138, 280, 552, 1972, 3169
SmiMI	CAYNNNNRTG	1 cut(s)	3213
SmlI	CTYRAG	4 cut(s)	159, 513, 2440, 2794
SmoI	CTYRAG	4 cut(s)	159, 513, 2440, 2794
SpeI	ACTAGT	1 cut(s)	3193
SphI	GCATGC	3 cut(s)	278, 910, 2872
SseBI	AGGCCT	2 cut(s)	101, 2017
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	2113
SstI	GAGCTC	1 cut(s)	3123
StuI	AGGCCT	2 cut(s)	101, 2017
StyI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2448, 3011, 3054, 3242
TaiI	ACGT	4 cut(s)	72, 147, 703, 3070
TaqI	TCGA	3 cut(s)	1139, 2386, 2736
TaqII	GACCGA	1 cut(s)	3186
TatI	WGTACW	2 cut(s)	150, 867
TauI	GCSGC	7 cut(s)	38, 41, 115, 130, 776, 1147, 2152
TfiI	GAWTC	4 cut(s)	975, 1175, 2533, 3280
Tru1I	TTAA	6 cut(s)	1200, 1584, 2106, 2297, 2396, 2553
Tru9I	TTAA	6 cut(s)	1200, 1584, 2106, 2297, 2396, 2553
TscAI	CASTG	9 cut(s)	427, 817, 985, 1283, 1510, 1941, 2523, 3010, 3345
TseFI	GTSAC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	746
TspGWI	ACGGA	3 cut(s)	33, 305, 548
TspRI	CASTG	9 cut(s)	427, 817, 985, 1283, 1510, 1941, 2523, 3010, 3345
Van91I	CCANNNNNTGG	1 cut(s)	2468
VpaK11BI	GGWCC	5 cut(s)	138, 280, 552, 1972, 3169
XapI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1807, 2887
XbaI	TCTAGA	2 cut(s)	1186, 2243
XceI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1256, 1576
XmaJI	CCTAGG	2 cut(s)	827, 1148
XmiI	GTMKAC	2 cut(s)	1594, 3060
ZrmI	AGTACT	1 cut(s)	869
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.