Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3378 bp

ATGAAGCAGCCGGCGAACGGAGGTTCGTCCGGCGCCGCCGCACTCAATTCCGGCGAAGGCGGAGAGAATGTGAAGATCATAAACCCGGAGCTATGGCAGGCCTGCGCCGGGCCGCTGGTGAACTTGCCGCCGGCCGGGACCCACGTGGTGTACTTCCCTCAAGGCCACAGCGAACAGGTTGCTGCTTCTATGAAAAAGGATGTTGATGCTCAAATTCCAAACTATCCAAATCTTCCCTCCAAGCTGCTATGTCTCCTTCACAATGTCACCTTGCATGCGGACCCCGAAACGGACGAAGTTTATGCTCAGATGACACTTCAACCTGTACCCTCATTTGACAAGGACGCATTATTGAGATCAGATCTTGCCCTGAAGTCCAATAAGCCCCAACCGGAGTTTTTCTGTAAAACATTGACTGCCAGTGATACAAGCACTCATGGAGGTTTCTCTGTTCCCCGCCGTGCAGCAGAGAAGATTTTTCCTCCTCTTGATTTCAACATGCAACCACCTGCTCAAGAACTCGCTGCCAGGGATTTGCATGATACTGTTTGGACCTTCCGTCATATCTATCGTGGACAACCAAAACGCCACTTGCTTACGACAGGATGGAGCCTTTTTGTTAGTGGGAAGAGGCTTTTTGCTGGTGATGCTGTCTTGTTCATTAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGACGTGCTAACAGGCAACCAACCAACCTATCATCATCAGTTTTGTCAAGTGACAGTATGCATATTGGGATTTTGGCTGCTGCAGCTCATGCTGCTGCGAACAATAGCCCCTTCACGGTGTTCTACAATCCTAGGGCTAGTCCATCAGAATTTGTTATCCCTTTGGCTAAGTACTACAAGGCAGTTTGTGCGAACCAACTATCATTGGGCATGCGCTTTCGTATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGTACATGGGTACAATTACAGGAATTAGTGATCTTGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTTGGTTGGGACGAGTCAACTGCTGGGGAAAGGCGTAATCGGGTATCAATCTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCATCTGTCCCCCACCATTCTTCAGGTCAAAGCGGCCTAGGCAACCAGGAATGCCAGATGATGAATCCTCTGATCTAGATAACCTTTTTAAAAGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAGGTGCTACCTGGTCTAAGCTTAGTCCAGTGGATGAACATGCAGCAAAATTCTTCTGTGGCTAGCTCCATGCAGCCAAATTATATGCACCCTTCATTTTCTGGTTCTGTTATGCAAAACCTTGCTGGTGTGGATCTTTCTCGGCAGATGGGCTTGTCAGCGCCTCAAATACCTCAGCCGAATAATCTACAGTTCAATGCTCAGAGGTTACCTCAGCAAGTGCAACAGCTTGACCAACAACCAAAGATGCAGTCCACTGTGAACCCATTAGCATCCATGGTACAACGACAGCAACAGTTGGGTGAGATGACACAAGTACCCAGGCAAAATTTGGTTAATCAAAGTATACCGTCCAGCCAAGCTCAGTCCCCGCTTCTGCAACCTCAGTCCCTTGCCCAAGCTAACAGTATTCTTCAGCAGCAATCATCTACTCAAAATCAACTTCAAAGAAACCTTCCTCAGAACTTGCAGCAGCACCAACAACAACAACAGCAACAACATCAACAGCAGCAGCAGCAGCATCAACAACAAAATGTGGGTCAAAATCAACAGCAAAATTTTATTCAGACTCCACAGCCTGATCAATTGAACCAACAGTTGCACCATCTTTCTGATAATCAGCTTCAACTTCAACTATTACAGAAGCTTCAGCAGCACCAGCAATCATACTTCGCACAGCAGGCACTGCAACAACAGCCTACTCAACTTCTCCAGCTCCAGGATCAGCAGAGGCATCTGTTAGATGCGTCTCAGAGCTTCCCGAGGCCCTCAACTCCTAGCCAAATGCAAGATATGCCTCTATCAGCACCAACCTCACATCCTCAGTCAAGAGCTATGCCACAGCAGATGACTGTTAATAATATTAGCCAACCTAATGGTCGGTTCTTGCATCCACAGCCGCAGCCAAAGCTTCAACAGCAGCAACCTGGTACTGAAATGTCCGGGCATATGGGACTTCCTCCAACTGGAACAACCAATCAGCTCTCTAGAGCTGGTAGCGGTATTATGGCAGGAGTTGCAGGAGCAGGGCAGTCCGGGTTAACAGATGAGGTTCCATCATGTTCCACTTCACCCTCCACAAACAACTGTCCAACTGTAATTCAACCATTGACGAACAACAGGGGCCATCGAAACTCATTAACTGGGGAGGACATGGCTCAGTCTGCCAACATGGTTATAAGCTCAAGTGCCTTGGAAACAATGCCATCTAATGGTAACTTAGTGAAAGGGTTTCAGCATAAGTCTGAAGTCAAGCCTTCAGTGAACATCACTACGAATCAAAGTCAAGGGATGCTTAACCCACAAATGTACCTGAATGGTGCAGCTGCCCAAACAGATTACTTGGACACTTCATCTTCAACAACTTCAGCGGGCCTCTCTCAGAATGATGTCCATTTACAGCACAATAATACCCCGTTGACTTTCAATCCACAGTCAATGTTGTTCAGAGAACCTAGTCAAGAAGTGGAAGTCCAGGTCGATCAGAGAAACAATGTTTCATATGGTTCTAACATTGATAGCCAATTGGGAATACCCTTGAGTTCTGATCCCTTGTTGGAAAAGGGCATGGTGGGGATAGGAAAGGATTTTACAAATAATCTCTCTTCAGGCATGCTTGGCAACTTTGAAAATTCAAAAGATGCTCAGCAGGAGCTTTCTTCTTCAATGGTTTCCCAGTCCTTTGGAGTTCCAGATATGACATTTCAGTCAATTGACTCCACTATAAATGACAGCAGTTTTCTGGACGGTGCCCCATGGGCACCAGCAGCACAATTTCAGCGGCTGCGGACATACACCAAGGTATACAAACGTGGAGCTGTTGGGAGATCTATAGATATTACACGCTATTCTGGTTATGATGAGCTCAAACATGATCTGGCTCGTCGGTTTGGCATAGAAGGACAGCTAGAGGACCGAGGGAGAGTAGGTTGGAAACTAGTTTATGTAGATCATGAGAATGATGTTCTGCTAGTTGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTTCGGTGCATCAAGATTCTGTCCCCACAAGAAGTCCAGCAGATGAGCTTGGATGGAGATTTTGGGGGCAACGCAGTGCGTCCAAATCAAGCTTGCAGCAGCTCGGACGGTGGAAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1125

Amino Acids

124.61

Weight (kDa)

6.26

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	134 - 236	1e-19	B3 DNA binding domain
ARF_AD	PF06507	283 - 366	3e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	1014 - 1097	2.3e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2426
AarI	CACCTGC	1 cut(s)	517
AasI	GACNNNNNNGTC	1 cut(s)	2953
Acc36I	ACCTGC	2 cut(s)	517, 1018
AccB1I	GGYRCC	3 cut(s)	32, 2996, 3007
AccB7I	CCANNNNNTGG	1 cut(s)	2459
AccI	GTMKAC	2 cut(s)	1594, 3051
AclWI	GGATC	6 cut(s)	983, 1238, 1251, 1389, 1977, 2789
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2878
AcuI	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1880, 2490, 2514, 2598, 2838
AcvI	CACGTG	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	9 cut(s)	152, 327, 869, 956, 964, 1530, 1566, 2179, 2558
AhdI	GACNNNNNGTC	1 cut(s)	558
AhlI	ACTAGT	1 cut(s)	3184
AjiI	CACGTC	1 cut(s)	701
AjnI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2721
Alw21I	GWGCWC	1 cut(s)	3114
Alw26I	GTCTC	2 cut(s)	257, 2001
AlwI	GGATC	6 cut(s)	983, 1238, 1251, 1389, 1977, 2789
AlwNI	CAGNNNCTG	2 cut(s)	1933, 3031
Ama87I	CYCGRG	1 cut(s)	2008
AoxI	GGCC	8 cut(s)	99, 110, 132, 163, 1145, 2012, 2371, 2620
ApoI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2878
ArsI	GACNNNNNNTTYG	4 cut(s)	1484, 1516, 1771, 1803
AspA2I	CCTAGG	2 cut(s)	827, 1148
AspLEI	GCGC	4 cut(s)	35, 107, 912, 1411
AspS9I	GGNCC	8 cut(s)	110, 138, 280, 552, 2013, 2371, 2620, 3160
AsuC2I	CCSGG	5 cut(s)	86, 109, 136, 2191, 2284
AsuHPI	GGTGA	6 cut(s)	130, 259, 656, 1235, 1562, 2310
AsuNHI	GCTAGC	1 cut(s)	1310
AvaI	CYCGRG	1 cut(s)	2008
AvaII	GGWCC	4 cut(s)	138, 280, 552, 3160
AvrII	CCTAGG	2 cut(s)	827, 1148
BaeGI	GKGCMC	2 cut(s)	3001, 3010
BaeI	ACNNNNGTAYC	6 cut(s)	946, 979, 1548, 1581, 2540, 2573
BamHI	GGATCC	1 cut(s)	1243
BanI	GGYRCC	3 cut(s)	32, 2996, 3007
BanII	GRGCYC	1 cut(s)	3114
BbrPI	CACGTG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	3114
BbvCI	CCTCAGC	2 cut(s)	1422, 1461
BccI	CCATC	9 cut(s)	600, 847, 993, 1390, 1860, 2311, 2382, 2461, 3302
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	6 cut(s)	161, 195, 284, 318, 1031, 1065
BciT130I	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2723
BclI	TGATCA	1 cut(s)	1828
BcnI	CCSGG	5 cut(s)	86, 109, 136, 2191, 2284
BcoDI	GTCTC	2 cut(s)	257, 2001
BcuI	ACTAGT	1 cut(s)	3184
BfmI	CTRYAG	3 cut(s)	777, 1436, 3078
BfoI	RGCGCY	2 cut(s)	36, 1412
BfuAI	ACCTGC	2 cut(s)	517, 1018
BglI	GCCNNNNNGGC	1 cut(s)	3005
BglII	AGATCT	2 cut(s)	361, 3074
BlnI	CCTAGG	2 cut(s)	827, 1148
BlpI	GCTNAGC	1 cut(s)	2892
BmcAI	AGTACT	1 cut(s)	869
Bme18I	GGWCC	4 cut(s)	138, 280, 552, 3160
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	2008
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	8 cut(s)	110, 138, 280, 552, 2013, 2371, 2620, 3160
BmrI	ACTGGG	2 cut(s)	2400, 2917
BmtI	GCTAGC	1 cut(s)	1314
BmuI	ACTGGG	2 cut(s)	2400, 2917
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
BpmI	CTGGAG	2 cut(s)	1943, 1949
Bpu10I	CCTNAGC	2 cut(s)	1422, 1461
Bpu1102I	GCTNAGC	1 cut(s)	2892
BpuEI	CTTGAG	4 cut(s)	144, 498, 2416, 2806
BpuMI	CCSGG	5 cut(s)	86, 109, 136, 2191, 2284
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 3160, 3190
Bse118I	RCCGGY	2 cut(s)	10, 130
Bse1I	ACTGG	5 cut(s)	420, 1276, 2218, 2395, 2923
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2723
BseGI	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2544, 3313
BseJI	GATNNNNATC	1 cut(s)	987
BseNI	ACTGG	5 cut(s)	420, 1276, 2218, 2395, 2923
BseRI	GAGGAG	2 cut(s)	474, 3254
BseSI	GKGCMC	2 cut(s)	3001, 3010
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	1052
BsgI	GTGCAG	2 cut(s)	483, 2589
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	8 cut(s)	101, 112, 134, 165, 1147, 2014, 2373, 2622
BshNI	GGYRCC	3 cut(s)	32, 2996, 3007
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	3114
BsiHKCI	CYCGRG	1 cut(s)	2008
BslFI	GGGAC	7 cut(s)	151, 1052, 1104, 1600, 1621, 2214, 3262
BsmAI	GTCTC	2 cut(s)	257, 2001
BsmBI	CGTCTC	1 cut(s)	2001
BsmFI	GGGAC	7 cut(s)	151, 1052, 1104, 1600, 1621, 2214, 3262
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	8 cut(s)	101, 112, 134, 165, 1147, 2014, 2373, 2622
BsoBI	CYCGRG	1 cut(s)	2008
Bsp1286I	GDGCHC	3 cut(s)	3001, 3010, 3114
Bsp1720I	GCTNAGC	1 cut(s)	2892
Bsp19I	CCATGG	2 cut(s)	1524, 3002
BspANI	GGCC	8 cut(s)	101, 112, 134, 165, 1147, 2014, 2373, 2622
BspHI	TCATGA	1 cut(s)	3199
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	517, 1018
BspOI	GCTAGC	1 cut(s)	1314
BspPI	GGATC	6 cut(s)	983, 1238, 1251, 1389, 1977, 2789
BspT107I	GGYRCC	3 cut(s)	32, 2996, 3007
BsrFI	RCCGGY	2 cut(s)	10, 130
BsrI	ACTGG	5 cut(s)	420, 1276, 2218, 2395, 2923
BssAI	RCCGGY	2 cut(s)	10, 130
BssNAI	GTATAC	2 cut(s)	1595, 3052
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2439, 3002, 3045, 3233
Bst1107I	GTATAC	2 cut(s)	1595, 3052
Bst2UI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2723
Bst6I	CTCTTC	3 cut(s)	623, 930, 2857
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	5 cut(s)	785, 884, 1933, 2041, 2264
BstBAI	YACGTR	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	1524, 3002
BstEII	GGTNACC	1 cut(s)	1455
BstF5I	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2544, 3313
BstH2I	RGCGCY	2 cut(s)	36, 1412
BstHHI	GCGC	4 cut(s)	35, 107, 912, 1411
BstMAI	GTCTC	2 cut(s)	257, 2001
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2723
BstNSI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2863
BstPI	GGTNACC	1 cut(s)	1455
BstSFI	CTRYAG	3 cut(s)	777, 1436, 3078
BstSLI	GKGCMC	2 cut(s)	3001, 3010
BstX2I	RGATCY	4 cut(s)	361, 1243, 1381, 3074
BstXI	CCANNNNNNTGG	2 cut(s)	2123, 2930
BstYI	RGATCY	4 cut(s)	361, 1243, 1381, 3074
BstZ17I	GTATAC	2 cut(s)	1595, 3052
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	8 cut(s)	101, 112, 134, 165, 1147, 2014, 2373, 2622
BtgI	CCRYGG	2 cut(s)	1524, 3002
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2544, 3313
BtsI	GCAGTG	2 cut(s)	1931, 3336
BtsIMutI	CAGTG	6 cut(s)	427, 1283, 1503, 1931, 2514, 3336
BveI	ACCTGC	2 cut(s)	517, 1018
CaiI	CAGNNNCTG	2 cut(s)	1933, 3031
CciI	TCATGA	1 cut(s)	3199
CfoI	GCGC	4 cut(s)	35, 107, 912, 1411
Cfr10I	RCCGGY	2 cut(s)	10, 130
Cfr13I	GGNCC	8 cut(s)	110, 138, 280, 552, 2013, 2371, 2620, 3160
CseI	GACGC	3 cut(s)	353, 1983, 3323
CsiI	ACCWGGT	2 cut(s)	1258, 2173
Csp6I	GTAC	9 cut(s)	151, 326, 868, 955, 963, 1529, 1565, 2178, 2557
CviQI	GTAC	9 cut(s)	151, 326, 868, 955, 963, 1529, 1565, 2178, 2557
DinI	GGCGCC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	1201
DraIII	CACNNNGTG	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	2953
DriI	GACNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	2953
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	623, 930, 2857
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	3 cut(s)	623, 930, 2857
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	3112
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2439, 3002, 3045, 3233
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	3114
Eco47I	GGWCC	4 cut(s)	138, 280, 552, 3160
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	3112
Eco57I	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1880, 2490, 2514, 2598, 2838
Eco72I	CACGTG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	2008
Eco91I	GGTNACC	1 cut(s)	1455
EcoICRI	GAGCTC	1 cut(s)	3112
EcoO109I	RGGNCCY	2 cut(s)	138, 2013
EcoO65I	GGTNACC	1 cut(s)	1455
EcoRII	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2721
EcoT14I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2439, 3002, 3045, 3233
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	3114
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2439, 3002, 3045, 3233
Esp3I	CGTCTC	1 cut(s)	2001
FalI	AAGNNNNNCTT	2 cut(s)	2526, 2558
FaqI	GGGAC	7 cut(s)	151, 1052, 1104, 1600, 1621, 2214, 3262
FauI	CCCGC	3 cut(s)	464, 1626, 2611
FauNDI	CATATG	2 cut(s)	2196, 2749
FbaI	TGATCA	1 cut(s)	1828
FblI	GTMKAC	2 cut(s)	1594, 3051
FokI	GGATG	9 cut(s)	212, 618, 680, 1294, 1507, 2052, 2124, 2551, 3320
FriOI	GRGCYC	1 cut(s)	3114
GlaI	GCGC	4 cut(s)	34, 106, 911, 1410
GsaI	CCCAGC	1 cut(s)	1056
GsuI	CTGGAG	2 cut(s)	1943, 1949
HaeII	RGCGCY	2 cut(s)	36, 1412
HaeIII	GGCC	8 cut(s)	101, 112, 134, 165, 1147, 2014, 2373, 2622
HgaI	GACGC	3 cut(s)	353, 1983, 3323
HhaI	GCGC	4 cut(s)	35, 107, 912, 1411
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	4 cut(s)	33, 105, 910, 1409
HinP1I	GCGC	4 cut(s)	33, 105, 910, 1409
HincII	GTYRAC	3 cut(s)	1047, 2289, 2667
HindII	GTYRAC	3 cut(s)	1047, 2289, 2667
HindIII	AAGCTT	4 cut(s)	1267, 1892, 2156, 3345
HinfI	GANTC	7 cut(s)	938, 1043, 1175, 1816, 2524, 2963, 3271
HpaI	GTTAAC	1 cut(s)	2289
HphI	GGTGA	6 cut(s)	130, 259, 656, 1235, 1562, 2310
Hpy99I	CGWCG	1 cut(s)	3135
HpyCH4IV	ACGT	3 cut(s)	144, 700, 3058
HpySE526I	ACGT	3 cut(s)	144, 700, 3058
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	4 cut(s)	33, 105, 910, 1409
KasI	GGCGCC	1 cut(s)	32
KflI	GGGWCCC	1 cut(s)	138
KroI	GCCGGC	2 cut(s)	10, 130
KroNI	GCCGGC	2 cut(s)	12, 132
Ksp22I	TGATCA	1 cut(s)	1828
KspAI	GTTAAC	1 cut(s)	2289
LmnI	GCTCC	8 cut(s)	88, 609, 1108, 1319, 1968, 2270, 2899, 3062
MabI	ACCWGGT	2 cut(s)	1258, 2173
MaeII	ACGT	3 cut(s)	144, 700, 3058
MaeIII	GTNAC	5 cut(s)	265, 746, 1096, 1455, 2462
MfeI	CAATTG	3 cut(s)	1832, 2771, 2958
MflI	RGATCY	4 cut(s)	361, 1243, 1381, 3074
MhlI	GDGCHC	3 cut(s)	3001, 3010, 3114
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	4 cut(s)	947, 1052, 1810, 2957
MmeI	TCCRAC	5 cut(s)	2234, 2363, 2784, 3158, 3202
Mph1103I	ATGCAT	1 cut(s)	759
MroNI	GCCGGC	2 cut(s)	10, 130
MseI	TTAA	6 cut(s)	1200, 1584, 2103, 2288, 2387, 2544
MslI	CAYNNNNRTG	1 cut(s)	3204
MspA1I	CMGCKG	4 cut(s)	115, 2573, 2618, 3028
MunI	CAATTG	3 cut(s)	1832, 2771, 2958
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2723
NaeI	GCCGGC	2 cut(s)	12, 132
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	5 cut(s)	86, 109, 136, 2191, 2284
NcoI	CCATGG	2 cut(s)	1524, 3002
NdeI	CATATG	2 cut(s)	2196, 2749
NgoMIV	GCCGGC	2 cut(s)	10, 130
NheI	GCTAGC	1 cut(s)	1310
NmeAIII	GCCGAG	1 cut(s)	1369
NmuCI	GTSAC	2 cut(s)	265, 746
NsiI	ATGCAT	1 cut(s)	759
NspI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2863
PaeI	GCATGC	3 cut(s)	278, 910, 2863
PagI	TCATGA	1 cut(s)	3199
PaqCI	CACCTGC	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1167
PdiI	GCCGGC	2 cut(s)	12, 132
PfeI	GAWTC	3 cut(s)	1175, 2524, 3271
PflMI	CCANNNNNTGG	1 cut(s)	2459
PfoI	TCCNGGA	1 cut(s)	1965
PleI	GAGTC	4 cut(s)	946, 1051, 1810, 2957
PluTI	GGCGCC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	4 cut(s)	946, 1051, 1810, 2957
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	2426
Psp124BI	GAGCTC	1 cut(s)	3114
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2721
PspCI	CACGTG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	1455
PspFI	CCCAGC	1 cut(s)	1052
PspGI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2721
PspPI	GGNCC	8 cut(s)	110, 138, 280, 552, 2013, 2371, 2620, 3160
PspPPI	RGGWCCY	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	1933, 3031
PsuI	RGATCY	4 cut(s)	361, 1243, 1381, 3074
PvuII	CAGCTG	1 cut(s)	2573
RsaI	GTAC	9 cut(s)	152, 327, 869, 956, 964, 1530, 1566, 2179, 2558
RsaNI	GTAC	9 cut(s)	151, 326, 868, 955, 963, 1529, 1565, 2178, 2557
RseI	CAYNNNNRTG	1 cut(s)	3204
SacI	GAGCTC	1 cut(s)	3114
SaqAI	TTAA	6 cut(s)	1200, 1584, 2103, 2288, 2387, 2544
Sau96I	GGNCC	8 cut(s)	110, 138, 280, 552, 2013, 2371, 2620, 3160
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	4 cut(s)	947, 1052, 1810, 2957
SduI	GDGCHC	3 cut(s)	3001, 3010, 3114
SexAI	ACCWGGT	2 cut(s)	1258, 2173
SfcI	CTRYAG	3 cut(s)	777, 1436, 3078
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	4 cut(s)	138, 280, 552, 3160
SmiMI	CAYNNNNRTG	1 cut(s)	3204
SmlI	CTYRAG	4 cut(s)	159, 513, 2431, 2785
SmoI	CTYRAG	4 cut(s)	159, 513, 2431, 2785
SpeI	ACTAGT	1 cut(s)	3184
SphI	GCATGC	3 cut(s)	278, 910, 2863
SseBI	AGGCCT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	2110
SstI	GAGCTC	1 cut(s)	3114
StuI	AGGCCT	1 cut(s)	101
StyI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2439, 3002, 3045, 3233
TaiI	ACGT	3 cut(s)	147, 703, 3061
TaqI	TCGA	2 cut(s)	2377, 2727
TaqII	GACCGA	1 cut(s)	3177
TatI	WGTACW	2 cut(s)	150, 867
TauI	GCSGC	7 cut(s)	38, 41, 115, 130, 1147, 2149, 3031
TfiI	GAWTC	3 cut(s)	1175, 2524, 3271
Tru1I	TTAA	6 cut(s)	1200, 1584, 2103, 2288, 2387, 2544
Tru9I	TTAA	6 cut(s)	1200, 1584, 2103, 2288, 2387, 2544
TscAI	CASTG	6 cut(s)	427, 1283, 1510, 1938, 2514, 3336
TseFI	GTSAC	2 cut(s)	265, 746
Tsp45I	GTSAC	2 cut(s)	265, 746
TspGWI	ACGGA	3 cut(s)	33, 305, 548
TspRI	CASTG	6 cut(s)	427, 1283, 1510, 1938, 2514, 3336
Van91I	CCANNNNNTGG	1 cut(s)	2459
VpaK11BI	GGWCC	4 cut(s)	138, 280, 552, 3160
XapI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2878
XbaI	TCTAGA	2 cut(s)	1186, 2234
XceI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2863
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1256, 1576
XmaJI	CCTAGG	2 cut(s)	827, 1148
XmiI	GTMKAC	2 cut(s)	1594, 3051
ZrmI	AGTACT	1 cut(s)	869
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.