Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Forward (+)

843564 .. 851369

Gene Structure 7806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGAGGACATGGACATCGATGATGTGGTTATACCTGACACGCCACCTACCAGACATGGTGTTTGCAGGGAATCTGTTGGTAAAGCCTGTAGTTCACCATTAGCTCACAAGTTGAATAATTCAGACTTTGTTGATGAGAATTCTGGGAATGGGCCAAGGGTCAAGGAGAGATTCTTCTATGAAAATGGTCAAAATAAAAGAATTGTTATTCGCCCTCCGAGAAATCCTAGCAATCTTGCAACTAAGAATGGCTCCTCAGGAACCAATTCATCTGCTTCCCAGAATGCTCACCTCTTTAGAAGACCAGCAGTGGGCAGAAACTCTAGTTGTGAGACCAAACATTCATCTGGGACCGGAAGCTTGGATAAAGGAAAGTCTATAGGCATTAAAGCATCGTCTAAATCTTCTGCTTTCCCAGAAAACATGGAAGTTCTTGATTTAACTGAACAGAATGGTCACTCCCAGTTACACAGAAAGGTTTTCCCACATGGAAAATTAGAAGATGTTGCTCAAGGCACAAAAAACCGGCAGATAATGTCAGTTGGCAGTTCTACAGATTGCTCTGCAAATTACTTGGAGAGATCCAGAAATGCCGACAAGGCTAAGGAAAAAATAGATGACAGTACATATAATGGTGTGGGTTTAGCTGTGCCCCTGGGAAAAAGGATTGATCTGCCTACTGAGCCTCAACATAAAACAGAGCATCAAAAGCCCATGGCTCTTCATTCTTTTACCCTGCCAAGAGTCAGTGGCCAGAAAAGGTTGGTAAGGAATGGTTGTATTTCCCCACATAACATAGCAACAAGGTCTAAACAATTAGATGTAGAGAATAATACAAGTTCCAAGAATATTGAACACAGTCATGCTGTCGACGCGGTTTCCAGTGGTTTACCATATGTCATAGGTACAAGTGATGTGGTCACTGAAGAGAATAAAAGGGAAAGAGCGAAAGGGAAAGGGGTAATGGTTCAACCTTCTACACCAAAGGAGAATAATGAAAGAATTGTTCATACATCAAGCAGTCTTCTGAATGATAATATTGAAGCTAATAGAACCAGACATGTTGGTAAAGATATATCTGGATGCTCTGAACGAATAGGTGGCTGGAGAAGTACACGTAATCGTTCAAGGACATTAGATCCTCTTTTGTCTGATTCAACTGAGCATCTTCCCAGAATAATTAACGGTGCCGGAAACTTTGTAAATCAACATGGAAACAGAGTAGAGAGGGAGGATACTGGGAGGGGAGGAAACTTTGTAAACTTTGCAGACGATCTGAATTCAACTCAAACAGCTTCAACAGTTGTATCTGAGCCAGGCTGGATGGCTGGACAACGTCGTGAAGGAAGGAGAGTTAGTAAAAGGGAGAAGAAACGGGGATTGAATATGGGAAATCATGGTGAATGCTCTACGTTGGATAATGGTGACTCAGACATTATGTTTCTCGGTTCATCTGAGACATCTGAAAGTTCAAAATCATCCAGGATTCACAGACCTCAGTTTCAGGGAATGTTGAGGCCAGTTATTGAAGTTGATGAGTTGTCACCTGCCGCAGGTCCCTCTGACCCCCAAGGTATCAATTCCATGAATGATGATTCAGAGGCTAAGGCAAGGCAACTAGAAGCCGATGAGATGTTGGCACGTGAACTGCAGGAACAATTGTATCATGAGGTTCCTGCTTTTGGTGGTGGCGAGCAGATTGATGAACATCTAGCTTGGGCACTGCAGCGGGAGGAGAATGCTTTTACTAGGTCATCTAGTGGAAGGCACAATATGCCTCATAGTAGAGGCTCCACAATATTGCATTCTCATAGACAGCCCCCGTCACAATCGTCTCAAAATCCTTCAACAAGGAGAGGAGCCCCGGCTCGAGTTCCCAGCCATTCTACAATGGCACAGTTAAGGAGTCGCCTTCGCAATCAGGCTCCTAGAGTATCAAATAGAAGAAGGAATCTGCGAGTTCCTTTTCCTTCAGACATGGATCTAGACATGAGACTTAATATACTTGAAGCTTTAGAGACTGCTGTTGGGGATGTTGGAGATGTGGGATTGAATAATCACATGTTTCGACTTCAGCGGGATTTCAATGCTGATGATTATGAGATGTTATTGGCACTTGATGAGAACAATCATCAACTTGGCGGTGCAACAGCTAATCAAATTAATAATTTGCCTCAATCTACAGTACAGACTGATGCCTCTGAAGAAGCTTGTGCAATCTGTCTTGAAACTCCAACACTTGGAGAAACAGTTCGTCATCTTCCTTGCTTGCACAGATTTCACAAAGATTGTATCGATCCATGGCTCAACAGAAAAACTTCGTGCCCAGTTTGCAAGTGTTCGATCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

783

Amino Acids

86.36

Weight (kDa)

8.15

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	735 - 779	1.8e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	737 - 779	6.1e-12	Ring finger domain
zf-C3HC4_2	PF13923	738 - 778	2.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	738 - 765	4e-08	RING-like zinc finger
zf-C3HC4	PF00097	738 - 778	7.6e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1555
Acc36I	ACCTGC	2 cut(s)	1544, 1555
AccB1I	GGYRCC	1 cut(s)	1187
AccB7I	CCANNNNNTGG	1 cut(s)	2240
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	1 cut(s)	875
AciI	CCGC	5 cut(s)	875, 1551, 1729, 2077, 2142
AclWI	GGATC	4 cut(s)	576, 1133, 1989, 2291
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	2 cut(s)	139, 1279
AcuI	CTGAAG	4 cut(s)	945, 1956, 2057, 2223
AcvI	CACGTG	1 cut(s)	1643
AfaI	GTAC	4 cut(s)	625, 907, 1114, 2187
AfiI	CCNNNNNNNGG	4 cut(s)	311, 1553, 1682, 2240
AflIII	ACRYGT	3 cut(s)	1060, 1115, 2061
AjnI	CCWGG	3 cut(s)	654, 1315, 1481
AloI	GAACNNNNNNTCC	2 cut(s)	2235, 2267
AluBI	AGCT	9 cut(s)	104, 360, 647, 1046, 1295, 1715, 2012, 2153, 2210
AluI	AGCT	9 cut(s)	104, 360, 647, 1046, 1295, 1715, 2012, 2153, 2210
Alw26I	GTCTC	5 cut(s)	326, 1451, 1839, 1987, 2012
AlwI	GGATC	4 cut(s)	576, 1133, 1989, 2291
Ama87I	CYCGRG	1 cut(s)	1869
AoxI	GGCC	3 cut(s)	152, 751, 1517
ApeKI	GCWGC	1 cut(s)	1726
ApoI	RAATTY	2 cut(s)	139, 1279
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AseI	ATTAAT	1 cut(s)	2163
Asp700I	GAANNNNTTC	3 cut(s)	265, 2250, 2317
AspS9I	GGNCC	3 cut(s)	152, 351, 1556
AsuC2I	CCSGG	1 cut(s)	1865
AsuHPI	GGTGA	5 cut(s)	87, 281, 1412, 1436, 1536
AvaI	CYCGRG	1 cut(s)	1869
AvaII	GGWCC	2 cut(s)	351, 1556
AxyI	CCTNAGG	1 cut(s)	256
BaeGI	GKGCMC	3 cut(s)	654, 1723, 2327
BaeI	ACNNNNGTAYC	4 cut(s)	1290, 1323, 1646, 1679
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	1187
BanII	GRGCYC	1 cut(s)	1864
BbrPI	CACGTG	1 cut(s)	1643
BbsI	GAAGAC	2 cut(s)	307, 1016
BbvI	GCAGC	1 cut(s)	1738
BccI	CCATC	1 cut(s)	1318
BciT130I	CCWGG	3 cut(s)	656, 1317, 1483
BciVI	GTATCC	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	1865
BcoDI	GTCTC	5 cut(s)	326, 1451, 1839, 1987, 2012
BfaI	CTAG	8 cut(s)	228, 324, 1619, 1712, 1749, 1758, 1929, 1985
BfmI	CTRYAG	6 cut(s)	88, 378, 552, 1649, 1724, 2181
BfuAI	ACCTGC	2 cut(s)	1544, 1555
BfuI	GTATCC	1 cut(s)	1228
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	2 cut(s)	1551, 1727
BlsI	GCNGC	2 cut(s)	1552, 1728
Bme1390I	CCNGG	4 cut(s)	656, 1317, 1483, 1865
Bme18I	GGWCC	2 cut(s)	351, 1556
BmeT110I	CYCGRG	1 cut(s)	1869
BmgT120I	GGNCC	3 cut(s)	152, 351, 1556
BmiI	GGNNCC	9 cut(s)	253, 262, 352, 1189, 1558, 1674, 1792, 1861, 1926
BmrFI	CCNGG	4 cut(s)	656, 1317, 1483, 1865
BmrI	ACTGGG	3 cut(s)	457, 1248, 2321
BmsI	GCATC	5 cut(s)	401, 712, 1073, 1174, 2185
BmuI	ACTGGG	3 cut(s)	457, 1248, 2321
BpiI	GAAGAC	2 cut(s)	307, 1016
BpmI	CTGGAG	1 cut(s)	1126
Bpu10I	CCTNAGC	2 cut(s)	603, 1605
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	1865
Bsa29I	ATCGAT	2 cut(s)	18, 2295
BsaAI	YACGTR	2 cut(s)	1118, 1643
BsaBI	GATNNNNATC	1 cut(s)	1707
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	7 cut(s)	155, 654, 655, 714, 1570, 1863, 2300
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	1342, 1372, 2235, 2265
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 1553, 1682, 2240
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	5 cut(s)	463, 882, 1243, 1520, 2327
Bse21I	CCTNAGG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	1707
BseBI	CCWGG	3 cut(s)	656, 1317, 1483
BseCI	ATCGAT	2 cut(s)	18, 2295
BseDI	CCNNGG	7 cut(s)	155, 654, 655, 714, 1570, 1863, 2300
BseGI	GGATG	4 cut(s)	1088, 1329, 1478, 2038
BseJI	GATNNNNATC	1 cut(s)	1707
BseLI	CCNNNNNNNGG	4 cut(s)	311, 1553, 1682, 2240
BseMII	CTCAG	7 cut(s)	270, 672, 1152, 1302, 1443, 1446, 1511
BseNI	ACTGG	5 cut(s)	463, 882, 1243, 1520, 2327
BseRI	GAGGAG	3 cut(s)	244, 1748, 1872
BseSI	GKGCMC	3 cut(s)	654, 1723, 2327
BseXI	GCAGC	1 cut(s)	1738
BseYI	CCCAGC	1 cut(s)	1877
Bsh1236I	CGCG	1 cut(s)	875
BshFI	GGCC	3 cut(s)	154, 753, 1519
BshNI	GGYRCC	1 cut(s)	1187
BshVI	ATCGAT	2 cut(s)	18, 2295
BsiHKCI	CYCGRG	1 cut(s)	1869
BsiSI	CCGG	4 cut(s)	354, 526, 1191, 1865
BslFI	GGGAC	2 cut(s)	364, 1542
BslI	CCNNNNNNNGG	4 cut(s)	311, 1553, 1682, 2240
BsmAI	GTCTC	5 cut(s)	326, 1451, 1839, 1987, 2012
BsmBI	CGTCTC	1 cut(s)	1839
BsmFI	GGGAC	2 cut(s)	364, 1542
BsmI	GAATGC	4 cut(s)	289, 1409, 1744, 1804
BsnI	GGCC	3 cut(s)	154, 753, 1519
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	1869
Bsp1286I	GDGCHC	4 cut(s)	654, 1723, 1864, 2327
Bsp143I	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
Bsp19I	CCATGG	2 cut(s)	714, 2300
BspACI	CCGC	5 cut(s)	875, 1551, 1729, 2077, 2142
BspANI	GGCC	3 cut(s)	154, 753, 1519
BspCNI	CTCAG	7 cut(s)	269, 673, 1153, 1303, 1442, 1447, 1510
BspDI	ATCGAT	2 cut(s)	18, 2295
BspFNI	CGCG	1 cut(s)	875
BspHI	TCATGA	1 cut(s)	1666
BspLI	GGNNCC	9 cut(s)	253, 262, 352, 1189, 1558, 1674, 1792, 1861, 1926
BspMAI	CTGCAG	2 cut(s)	1653, 1728
BspMI	ACCTGC	2 cut(s)	1544, 1555
BspPI	GGATC	4 cut(s)	576, 1133, 1989, 2291
BspQI	GCTCTTC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	1187
BspTNI	GGTCTC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	525
BsrI	ACTGG	5 cut(s)	463, 882, 1243, 1520, 2327
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	7 cut(s)	155, 654, 655, 714, 1570, 1863, 2300
BssMI	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
BssT1I	CCWWGG	4 cut(s)	155, 714, 1570, 2300
Bst2UI	CCWGG	3 cut(s)	656, 1317, 1483
Bst4CI	ACNGT	7 cut(s)	623, 860, 1187, 1303, 1899, 2185, 2251
Bst6I	CTCTTC	2 cut(s)	726, 921
BstAPI	GCANNNNNTGC	1 cut(s)	1774
BstBAI	YACGTR	2 cut(s)	1118, 1643
BstC8I	GCNNGC	2 cut(s)	1694, 2270
BstDSI	CCRYGG	2 cut(s)	714, 2300
BstENI	CCTNNNNNAGG	1 cut(s)	1551
BstF5I	GGATG	4 cut(s)	1088, 1329, 1478, 2038
BstFNI	CGCG	1 cut(s)	875
BstKTI	GATC	7 cut(s)	584, 673, 1141, 1276, 1984, 2299, 2346
BstMAI	GTCTC	5 cut(s)	326, 1451, 1839, 1987, 2012
BstMBI	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
BstMWI	GCNNNNNNNGC	6 cut(s)	599, 682, 709, 872, 1774, 2331
BstNI	CCWGG	3 cut(s)	656, 1317, 1483
BstNSI	RCATGY	2 cut(s)	1064, 2065
BstSCI	CCNGG	4 cut(s)	654, 1315, 1481, 1863
BstSFI	CTRYAG	6 cut(s)	88, 378, 552, 1649, 1724, 2181
BstSLI	GKGCMC	3 cut(s)	654, 1723, 2327
BstUI	CGCG	1 cut(s)	875
BstV1I	GCAGC	1 cut(s)	1738
BstV2I	GAAGAC	2 cut(s)	307, 1016
BstX2I	RGATCY	3 cut(s)	581, 1138, 1981
BstYI	RGATCY	3 cut(s)	581, 1138, 1981
Bsu15I	ATCGAT	2 cut(s)	18, 2295
Bsu36I	CCTNAGG	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	1228
BsuRI	GGCC	3 cut(s)	154, 753, 1519
BsuTUI	ATCGAT	2 cut(s)	18, 2295
BtgI	CCRYGG	2 cut(s)	714, 2300
BtsCI	GGATG	4 cut(s)	1088, 1329, 1478, 2038
BtsI	GCAGTG	2 cut(s)	315, 1721
BtsIMutI	CAGTG	5 cut(s)	315, 754, 889, 921, 1721
BveI	ACCTGC	2 cut(s)	1544, 1555
Cac8I	GCNNGC	2 cut(s)	1694, 2270
CciI	TCATGA	1 cut(s)	1666
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	3 cut(s)	152, 351, 1556
ClaI	ATCGAT	2 cut(s)	18, 2295
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	4 cut(s)	624, 906, 1113, 2186
CspCI	CAANNNNNGTGG	2 cut(s)	897, 932
CviQI	GTAC	4 cut(s)	624, 906, 1113, 2186
DpnI	GATC	7 cut(s)	583, 672, 1140, 1275, 1983, 2298, 2345
DpnII	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	726, 921
EarI	CTCTTC	2 cut(s)	726, 921
Eco130I	CCWWGG	4 cut(s)	155, 714, 1570, 2300
Eco24I	GRGCYC	1 cut(s)	1864
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	351, 1556
Eco57I	CTGAAG	4 cut(s)	945, 1956, 2057, 2223
Eco72I	CACGTG	1 cut(s)	1643
Eco81I	CCTNAGG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	1869
EcoNI	CCTNNNNNAGG	1 cut(s)	1551
EcoO109I	RGGNCCY	1 cut(s)	1556
EcoRI	GAATTC	2 cut(s)	139, 1279
EcoRII	CCWGG	3 cut(s)	654, 1315, 1481
EcoT14I	CCWWGG	4 cut(s)	155, 714, 1570, 2300
EcoT38I	GRGCYC	1 cut(s)	1864
ErhI	CCWWGG	4 cut(s)	155, 714, 1570, 2300
Esp3I	CGTCTC	1 cut(s)	1839
FaqI	GGGAC	2 cut(s)	364, 1542
FauI	CCCGC	2 cut(s)	1722, 2070
FauNDI	CATATG	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	2 cut(s)	1551, 1727
FokI	GGATG	4 cut(s)	1095, 1336, 1465, 2045
FriOI	GRGCYC	1 cut(s)	1864
Fsp4HI	GCNGC	2 cut(s)	1551, 1727
FspBI	CTAG	8 cut(s)	228, 324, 1619, 1712, 1749, 1758, 1929, 1985
GluI	GCNGC	2 cut(s)	1551, 1727
GsaI	CCCAGC	1 cut(s)	1881
GsuI	CTGGAG	1 cut(s)	1126
HaeIII	GGCC	3 cut(s)	154, 753, 1519
HapII	CCGG	4 cut(s)	354, 526, 1191, 1865
HgaI	GACGC	1 cut(s)	881
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	3 cut(s)	358, 2010, 2208
HinfI	GANTC	9 cut(s)	71, 171, 744, 1154, 1427, 1486, 1595, 1906, 1951
HpaII	CCGG	4 cut(s)	354, 526, 1191, 1865
HphI	GGTGA	5 cut(s)	87, 281, 1412, 1436, 1536
Hpy166II	GTNNAC	6 cut(s)	95, 871, 890, 1115, 1261, 1646
Hpy188III	TCNNGA	8 cut(s)	258, 434, 585, 1080, 1340, 1667, 1985, 2225
Hpy8I	GTNNAC	6 cut(s)	95, 871, 890, 1115, 1261, 1646
Hpy99I	CGWCG	2 cut(s)	875, 1341
HpyAV	CCTTC	8 cut(s)	984, 1337, 1341, 1758, 1854, 1922, 1941, 1980
HpyCH4III	ACNGT	7 cut(s)	623, 860, 1187, 1303, 1899, 2185, 2251
HpyCH4IV	ACGT	4 cut(s)	1117, 1336, 1412, 1642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	599, 682, 709, 872, 1774, 2331
HpySE526I	ACGT	4 cut(s)	1117, 1336, 1412, 1642
Kzo9I	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	4 cut(s)	257, 1796, 1859, 1930
Lsp1109I	GCAGC	1 cut(s)	1738
LweI	GCATC	5 cut(s)	401, 712, 1073, 1174, 2185
MaeI	CTAG	8 cut(s)	228, 324, 1619, 1712, 1749, 1758, 1929, 1985
MaeII	ACGT	4 cut(s)	1117, 1336, 1412, 1642
MaeIII	GTNAC	6 cut(s)	455, 465, 919, 1424, 1542, 1824
MalI	GATC	7 cut(s)	583, 672, 1140, 1275, 1983, 2298, 2345
MboI	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
MfeI	CAATTG	1 cut(s)	1658
MflI	RGATCY	3 cut(s)	581, 1138, 1981
MhlI	GDGCHC	4 cut(s)	654, 1723, 1864, 2327
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	3 cut(s)	753, 1421, 1915
MmeI	TCCRAC	3 cut(s)	1395, 2017, 2258
Mox20I	TGGCCA	1 cut(s)	753
MroXI	GAANNNNTTC	3 cut(s)	265, 2250, 2317
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	6 cut(s)	387, 440, 1182, 1901, 1998, 2163
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	1729, 2077
MspI	CCGG	4 cut(s)	354, 526, 1191, 1865
MspR9I	CCNGG	4 cut(s)	656, 1317, 1483, 1865
MunI	CAATTG	1 cut(s)	1658
Mva1269I	GAATGC	4 cut(s)	289, 1409, 1744, 1804
MvaI	CCWGG	3 cut(s)	656, 1317, 1483
MvnI	CGCG	1 cut(s)	875
MwoI	GCNNNNNNNGC	6 cut(s)	599, 682, 709, 872, 1774, 2331
NciI	CCSGG	1 cut(s)	1865
NcoI	CCATGG	2 cut(s)	714, 2300
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
NlaIV	GGNNCC	9 cut(s)	253, 262, 352, 1189, 1558, 1674, 1792, 1861, 1926
NmuCI	GTSAC	5 cut(s)	455, 919, 1424, 1542, 1824
NspI	RCATGY	2 cut(s)	1064, 2065
PaeR7I	CTCGAG	1 cut(s)	1869
PagI	TCATGA	1 cut(s)	1666
PaqCI	CACCTGC	1 cut(s)	1555
PasI	CCCWGGG	1 cut(s)	655
PciI	ACATGT	2 cut(s)	1060, 2061
PciSI	GCTCTTC	1 cut(s)	726
PctI	GAATGC	4 cut(s)	289, 1409, 1744, 1804
PdmI	GAANNNNTTC	3 cut(s)	265, 2250, 2317
PfeI	GAWTC	6 cut(s)	71, 171, 1154, 1486, 1595, 1951
PflFI	GACNNNGTC	1 cut(s)	1335
PflMI	CCANNNNNTGG	1 cut(s)	2240
PfoI	TCCNGGA	1 cut(s)	1481
PkrI	GCNGC	2 cut(s)	1552, 1728
PleI	GAGTC	3 cut(s)	752, 1421, 1914
PmaCI	CACGTG	1 cut(s)	1643
PmlI	CACGTG	1 cut(s)	1643
PpsI	GAGTC	3 cut(s)	752, 1421, 1914
Ppu21I	YACGTR	2 cut(s)	1118, 1643
PpuMI	RGGWCCY	1 cut(s)	1556
PscI	ACATGT	2 cut(s)	1060, 2061
PshBI	ATTAAT	1 cut(s)	2163
Psp5II	RGGWCCY	1 cut(s)	1556
Psp6I	CCWGG	3 cut(s)	654, 1315, 1481
PspCI	CACGTG	1 cut(s)	1643
PspFI	CCCAGC	1 cut(s)	1877
PspGI	CCWGG	3 cut(s)	654, 1315, 1481
PspN4I	GGNNCC	9 cut(s)	253, 262, 352, 1189, 1558, 1674, 1792, 1861, 1926
PspPI	GGNCC	3 cut(s)	152, 351, 1556
PspPPI	RGGWCCY	1 cut(s)	1556
PspXI	VCTCGAGB	1 cut(s)	1869
PstI	CTGCAG	2 cut(s)	1653, 1728
PsuI	RGATCY	3 cut(s)	581, 1138, 1981
PsyI	GACNNNGTC	1 cut(s)	1335
RsaI	GTAC	4 cut(s)	625, 907, 1114, 2187
RsaNI	GTAC	4 cut(s)	624, 906, 1113, 2186
RseI	CAYNNNNRTG	1 cut(s)	861
SalI	GTCGAC	1 cut(s)	869
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	6 cut(s)	387, 440, 1182, 1901, 1998, 2163
SatI	GCNGC	2 cut(s)	1551, 1727
Sau3AI	GATC	7 cut(s)	581, 670, 1138, 1273, 1981, 2296, 2343
Sau96I	GGNCC	3 cut(s)	152, 351, 1556
SchI	GAGTC	3 cut(s)	753, 1421, 1915
ScrFI	CCNGG	4 cut(s)	656, 1317, 1483, 1865
SduI	GDGCHC	4 cut(s)	654, 1723, 1864, 2327
SfaNI	GCATC	5 cut(s)	401, 712, 1073, 1174, 2185
SfcI	CTRYAG	6 cut(s)	88, 378, 552, 1649, 1724, 2181
Sfr274I	CTCGAG	1 cut(s)	1869
SinI	GGWCC	2 cut(s)	351, 1556
SlaI	CTCGAG	1 cut(s)	1869
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	2 cut(s)	510, 1869
SmoI	CTYRAG	2 cut(s)	510, 1869
SsiI	CCGC	5 cut(s)	875, 1551, 1729, 2077, 2142
SspI	AATATT	3 cut(s)	850, 1039, 1800
SspMI	CTAG	8 cut(s)	228, 324, 1619, 1712, 1749, 1758, 1929, 1985
StyD4I	CCNGG	4 cut(s)	654, 1315, 1481, 1863
StyI	CCWWGG	4 cut(s)	155, 714, 1570, 2300
TaaI	ACNGT	7 cut(s)	623, 860, 1187, 1303, 1899, 2185, 2251
TaiI	ACGT	4 cut(s)	1120, 1339, 1415, 1645
TaqI	TCGA	6 cut(s)	18, 870, 1870, 2068, 2295, 2342
TatI	WGTACW	3 cut(s)	623, 1112, 2185
TauI	GCSGC	1 cut(s)	1553
TfiI	GAWTC	6 cut(s)	71, 171, 1154, 1486, 1595, 1951
Tru1I	TTAA	6 cut(s)	387, 440, 1182, 1901, 1998, 2163
Tru9I	TTAA	6 cut(s)	387, 440, 1182, 1901, 1998, 2163
TscAI	CASTG	5 cut(s)	315, 754, 889, 928, 1728
TseFI	GTSAC	5 cut(s)	455, 919, 1424, 1542, 1824
TseI	GCWGC	1 cut(s)	1726
Tsp45I	GTSAC	5 cut(s)	455, 919, 1424, 1542, 1824
TspDTI	ATGAA	9 cut(s)	195, 258, 333, 713, 998, 1011, 1440, 1601, 1719
TspRI	CASTG	5 cut(s)	315, 754, 889, 928, 1728
Tth111I	GACNNNGTC	1 cut(s)	1335
Van91I	CCANNNNNTGG	1 cut(s)	2240
VpaK11BI	GGWCC	2 cut(s)	351, 1556
VspI	ATTAAT	1 cut(s)	2163
XagI	CCTNNNNNAGG	1 cut(s)	1551
XapI	RAATTY	2 cut(s)	139, 1279
XbaI	TCTAGA	1 cut(s)	1984
XceI	RCATGY	2 cut(s)	1064, 2065
XhoI	CTCGAG	1 cut(s)	1869
XmiI	GTMKAC	1 cut(s)	870
XmnI	GAANNNNTTC	3 cut(s)	265, 2250, 2317
XspI	CTAG	8 cut(s)	228, 324, 1619, 1712, 1749, 1758, 1929, 1985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.