Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Reverse (-)

23431043 .. 23437729

Gene Structure 6687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1234500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

ATGAAGCCGCCGGCGAACGGCGCCGGAGCTTCCGTCGCCAACTGCGCATCCAATTCATGCCCAGGGGGAGAGAATGTAAAGAGCATAAACCCGGAGCTATGGCAAGCGTGCGCCGGGCCGCTGGTGAACTTGCCGCCGGCGGGGACCCACGTGGTGTACTTCCCTCAAGGCCACAGCGAACAGGTTGCGGCTTCTATGAAAAAGGATGTGGATGGTCAAATACCCAACTACCCGAATCTCCCATCCAAGCTACTATGTCTCCTTCACAATGTCACCTTGCATGTATGGGCGGACCCCGAAACAGACGAAGTTTATGCGCAGATGACACTTCTGCCCGTGTCATCGTTTGACAAGGATGCACTATTGAGATCAGATCTTGCGCTCAAGACAAATAAGCCCCAACCAGAATTTTTCTGCAAAACATTGACAGCAAGTGATACAAGCACTCATGGAGGTTTCTCAGTGCCCCGACGTGCAGCAGAAAAGATTTTCCCTTCTCTCGACTTCTCCATGCAACCACCTGCCCAAGAACTTGTTGCCCGGGATTTGCATGATACTGTTTGGACCTTCCGCCATATCTATCGTGGGCAACCAAAACGCCACTTGCTTACAACAGGATGGAGCCTATTTGTTAGTGGGAAGAGGCTTTTTGCTGGTGATTCCGTCTTGTTCATCAGGGATGAAAAACAGCAGCTTCTTTTGGGAATTAGACGAGCAAATAGGCAACCCACCAACCTATCATCTTCAGTATTGTCAAGTGACAGTATGCATATTGGAATTTTAGCAGCTGCAGCTCATGCTGCCGCTAATAATAGCCCCTTCACAGTATTCTACAATCCAAGGGCTAGTCCATCAGAGTTTGTTATCCCTTTAGCCAAGTACTACAAGGCAGCATGTGGCAACCAACTATCACTAGGCATGCGTTTTCGTATGATGTTCGAAACTGAAGAGTCAGGGACAAGAAGGTACATGGGTACAATTACAGGAATTAGTGATCTTGATCCTGTTAGATGGAAGCACTCACAATGGCGTAATTTGCAGGTTGGTTGGGACGAATCAACTGCTGGGGAAAGGCGTAATCGGGTTTCAATTTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCATCTGCCCTCCACCATTCTTCAGATCAAAGCGTCCCAGGCAACCAGGAATGCCAGATGAGGACTATGATATGGATAATCTTTTCAAGAGAACAATGCCTTGGCTTGGTGATGATATGTCCATGAAGGATCCCCAGGTTCTACCTGGCCTAAGCTTAGTCCAGTGGATGAACATGCAGCAAAATTCTTCCACAGGCAACTCCATGCAGCCAAATTATATGCATTCGTATTCTGGTTCAGCTATCCAAAACCTTGCTGGAGCAGATCTTTCTCGGCAGTTGGGCTTGTCGGCTCCTCAAATACCTCAAATGAACAATTTACAATTCAATGGCCAGAGGCCACCTCAGCAAGTGCTTGATCAGCTCCCAAAGCAGCCATCCTCATTGAGCCCGTTAGCACCCATGATACAACGTCAGCAACAGTTGGGAGATAATTCTCAACCACCCCGGCAAAATTCGGTCAATCAAACTCTGCCCTTGAGCCAAGTTCAGTCCCAGCTTCTGCAACCTCAGACCCTTGCCCAAAATAACAGTGGTGTTCTTCAGCAGCAATCGTCTGCTCAAAACCATCTTCAAAGAAACATACCTCAGAACCTACAACAGCATCAGCAGCAGCAGCATCAACAACAAATTATGGGTCAAAATCAACAGCAGAGTTTTATTCAGTCTCAACCGCCAGATCAAATGAACCAACAGTTACAACATCTTTCGGATAATCAGCTTCAGTTTCAACTGTTACAGAAGCTTCAACAACAACAGCAGTCACTTTTAGCACAGCAGGCACAGCAACATCCCGCCCAGCAAGTCCAACTCCAGGACCAGCAGAGGCAAATGTTTGATATGTCCCAGAGCTTCTCGAGGCCTTCTCCCACCCAAATGTTAGATATGCCTCAAATGGCACCAACCGCGCATCCTCAGTCAAGAACAATGCCACAGCAGATGACAAAGAATAGTCACAGCCAAGCTAATGTTCGGTTTTCTCAACCACCTCAGCAGCCAAAGCTTCAACAGCAGCAATCTGGTATGCTGCCTGAAATGTCCGGGCACATGGGACTCCCGAACACAACCACCAATCAGCTCTCTACAGTGGGTAGCAATATTATGACAGCGGTTGCAGGAGCTGGGCAGTCTGGGATTACAGATGAGGTTCCATCTTGTTCAACTTCACCATCCACAAACAACGGCCCGATTGTAATTCAACCGTTGATGAACAACAGATCACACCGAAACTCATCAATAGGGGAGGACATGGCTCAGTCTGCCACCACAATATTGAGTTCTGGTGCCATAGACAGAATGCCATCTCATGGTAACTTGATGAAAGATTTCCAACATAAGTCTGAAGTTAGGGCGTCAGTGAACATTGCTAGGAATCAAAGTCAAGGAATTCTTACACCGCAAGCATACATGAACAGTGCAGCGGCCCAGACAGATTACTTGGACACATCATCTTCAACAACTTCAGTTGGCCTCTCTCAGAATGATGTCCATTTACAGCAGAATAACGCCCCGTTGCCTTTCCATCCACAATCAATGTTATTCAGAGAAGCCAGTCAAGAAGTGGAAGTTCTGGTAGATCAGAGAAGCAATGTTCCGTATGGTTCTAACATTGATGGTCAAATAGGGATACCTTTGAATCCTGATCCTATGTTGGCCAAAGGCGTGGTGAGGTTAGCAAAGGATTTTTCAAATACTCTCTCTTCGGGTGGCATGCTTGGCAACTATGAAAATTCGAAAGATGCTCAGGTGGAACTTTCAACTTCAATGGTTTCCCAGTCCTTTGGAGTTCCTGATATGACATTCAATTCGATTGACTCAGCGATAAACGATAGCAGCTTTCTGGACAGCGGCCCATGGGCACCTGCTCCGCCATTTCAGCGGATGCGGACATACACCAAGGTGTACAAACGCGGAGCTGTAGGGAGATCCATAGATATGACACGCTATTCAAATTATGACGAGCTTAAACAAGATCTGGCTCGACGGTTTGGTATAGAGGGACAGTTAGAGGACCGAGGGAGGGTAGGCTGGAAACTTGTGTATGTAGATCATGAGAATGATGTTCTGCTAGTTGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTTCGCTGCATCAAGATCCTTTCCCCGCAAGAAGTCCAGCAGATGAGTTTGGATGGAGATTTTGGCGGCAACGCTGTGCTCCCAAACCAAGCTTGCAGCAGCTCGGATGGTGGGAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1117

Amino Acids

123.65

Weight (kDa)

6.44

Isoelectric Point (pI)

65.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	138 - 240	1.7e-20	B3 DNA binding domain
ARF_AD	PF06507	287 - 370	1.4e-33	Auxin response factor ancillary domain
AUX_IAA	PF02309	1051 - 1088	6.8e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	529, 2992
Acc16I	TGCGCA	2 cut(s)	46, 318
Acc36I	ACCTGC	3 cut(s)	529, 1030, 2992
AccB1I	GGYRCC	4 cut(s)	20, 2020, 2405, 2980
AccB7I	CCANNNNNTGG	1 cut(s)	2429
AccII	CGCG	2 cut(s)	2030, 3033
AclWI	GGATC	6 cut(s)	995, 1247, 1260, 2759, 3042, 3238
AcoI	YGGCCR	2 cut(s)	1453, 2775
AcsI	RAATTY	6 cut(s)	407, 777, 1306, 1576, 2508, 2851
AcuI	CTGAAG	7 cut(s)	729, 966, 1129, 1649, 1829, 2484, 2568
AcvI	CACGTG	1 cut(s)	151
AcyI	GRCGYC	2 cut(s)	21, 2474
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	5 cut(s)	158, 881, 968, 976, 3026
AfiI	CCNNNNNNNGG	7 cut(s)	17, 140, 1229, 1936, 2429, 3142, 3211
AjiI	CACGTC	1 cut(s)	473
AjnI	CCWGG	6 cut(s)	61, 1160, 1168, 1257, 1267, 1935
AjuI	GAANNNNNNNTTGG	4 cut(s)	1207, 1239, 2076, 2108
AleI	CACNNNNGTG	1 cut(s)	3020
Alw21I	GWGCWC	1 cut(s)	3309
Alw26I	GTCTC	2 cut(s)	263, 1794
AlwI	GGATC	6 cut(s)	995, 1247, 1260, 2759, 3042, 3238
AlwNI	CAGNNNCTG	2 cut(s)	1624, 2243
Ama87I	CYCGRG	2 cut(s)	540, 1978
ApoI	RAATTY	6 cut(s)	407, 777, 1306, 1576, 2508, 2851
ArsI	GACNNNNNNTTYG	4 cut(s)	1744, 1776, 2911, 2943
Asp700I	GAANNNNTTC	1 cut(s)	2447
AspLEI	GCGC	6 cut(s)	23, 47, 113, 319, 382, 2032
AspS9I	GGNCC	9 cut(s)	116, 144, 292, 564, 1939, 2306, 2545, 2972, 3133
AsuC2I	CCSGG	6 cut(s)	92, 115, 541, 542, 1570, 2164
AsuHPI	GGTGA	6 cut(s)	136, 265, 668, 1244, 2280, 2800
AsuII	TTCGAA	2 cut(s)	939, 2855
AvaI	CYCGRG	2 cut(s)	540, 1978
AvaII	GGWCC	5 cut(s)	144, 292, 564, 1939, 3133
BaeGI	GKGCMC	3 cut(s)	468, 2169, 2983
BaeI	ACNNNNGTAYC	2 cut(s)	958, 991
BalI	TGGCCA	2 cut(s)	1455, 2777
BamHI	GGATCC	1 cut(s)	1252
BanI	GGYRCC	4 cut(s)	20, 2020, 2405, 2980
BanII	GRGCYC	1 cut(s)	1514
BbrPI	CACGTG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	3309
BbvCI	CCTCAGC	2 cut(s)	1467, 2112
BceAI	ACGGC	2 cut(s)	34, 2320
BcgI	CGANNNNNNTGC	6 cut(s)	167, 201, 296, 330, 1043, 1077
BciT130I	CCWGG	6 cut(s)	63, 1162, 1170, 1259, 1269, 1937
BciVI	GTATCC	1 cut(s)	2742
BclI	TGATCA	1 cut(s)	1480
BcnI	CCSGG	6 cut(s)	92, 115, 541, 542, 1570, 2164
BcoDI	GTCTC	2 cut(s)	263, 1794
BfaI	CTAG	4 cut(s)	846, 914, 2490, 3191
BfmI	CTRYAG	3 cut(s)	789, 2205, 3039
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	3 cut(s)	529, 1030, 2992
BfuI	GTATCC	1 cut(s)	2742
BglII	AGATCT	3 cut(s)	373, 1387, 3094
BmcAI	AGTACT	1 cut(s)	881
Bme18I	GGWCC	5 cut(s)	144, 292, 564, 1939, 3133
BmeT110I	CYCGRG	2 cut(s)	540, 1978
BmgBI	CACGTC	1 cut(s)	473
BmgT120I	GGNCC	9 cut(s)	116, 144, 292, 564, 1939, 2306, 2545, 2972, 3133
BmrI	ACTGGG	1 cut(s)	2890
BmsI	GCATC	8 cut(s)	56, 346, 1735, 1750, 2041, 2851, 2994, 3246
BmuI	ACTGGG	1 cut(s)	2890
BplI	GAGNNNNNCTC	4 cut(s)	1450, 1482, 1972, 2004
BpmI	CTGGAG	2 cut(s)	1401, 1919
Bpu10I	CCTNAGC	4 cut(s)	1274, 1467, 2112, 2865
Bpu14I	TTCGAA	2 cut(s)	939, 2855
BpuEI	CTTGAG	3 cut(s)	150, 368, 1621
BpuMI	CCSGG	6 cut(s)	92, 115, 541, 542, 1570, 2164
BsaAI	YACGTR	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	999
BsaHI	GRCGYC	2 cut(s)	21, 2474
BsaXI	ACNNNNNCTCC	6 cut(s)	18, 48, 60, 90, 243, 273
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 140, 1229, 1936, 2429, 3142, 3211
Bse118I	RCCGGY	2 cut(s)	10, 136
Bse1I	ACTGG	3 cut(s)	1285, 2673, 2896
Bse3DI	GCAATG	2 cut(s)	2484, 2716
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	6 cut(s)	63, 1162, 1170, 1259, 1269, 1937
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	7 cut(s)	17, 140, 1229, 1936, 2429, 3142, 3211
BseMI	GCAATG	2 cut(s)	2484, 2716
BseNI	ACTGG	3 cut(s)	1285, 2673, 2896
BseRI	GAGGAG	2 cut(s)	1407, 3227
BseSI	GKGCMC	3 cut(s)	468, 2169, 2983
BseYI	CCCAGC	4 cut(s)	1064, 1617, 1920, 2243
BsgI	GTGCAG	2 cut(s)	495, 2559
Bsh1236I	CGCG	2 cut(s)	2030, 3033
BshNI	GGYRCC	4 cut(s)	20, 2020, 2405, 2980
BsiHKAI	GWGCWC	1 cut(s)	3309
BsiHKCI	CYCGRG	2 cut(s)	540, 1978
BsiSI	CCGG	8 cut(s)	11, 24, 92, 114, 137, 541, 1570, 2163
BslFI	GGGAC	8 cut(s)	157, 970, 1064, 1143, 1600, 1951, 2187, 3135
BslI	CCNNNNNNNGG	7 cut(s)	17, 140, 1229, 1936, 2429, 3142, 3211
BsmAI	GTCTC	2 cut(s)	263, 1794
BsmFI	GGGAC	8 cut(s)	157, 970, 1064, 1143, 1600, 1951, 2187, 3135
BsmI	GAATGC	4 cut(s)	1179, 1345, 2424, 3349
BsoBI	CYCGRG	2 cut(s)	540, 1978
Bsp119I	TTCGAA	2 cut(s)	939, 2855
Bsp1286I	GDGCHC	5 cut(s)	468, 1514, 2169, 2983, 3309
Bsp1407I	TGTACA	1 cut(s)	3024
Bsp19I	CCATGG	1 cut(s)	2975
BspFNI	CGCG	2 cut(s)	2030, 3033
BspHI	TCATGA	1 cut(s)	3172
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	3 cut(s)	529, 1030, 2992
BspPI	GGATC	6 cut(s)	995, 1247, 1260, 2759, 3042, 3238
BspT104I	TTCGAA	2 cut(s)	939, 2855
BspT107I	GGYRCC	4 cut(s)	20, 2020, 2405, 2980
BsrDI	GCAATG	2 cut(s)	2484, 2716
BsrFI	RCCGGY	2 cut(s)	10, 136
BsrGI	TGTACA	1 cut(s)	3024
BsrI	ACTGG	3 cut(s)	1285, 2673, 2896
BssAI	RCCGGY	2 cut(s)	10, 136
BssNI	GRCGYC	2 cut(s)	21, 2474
BssT1I	CCWWGG	5 cut(s)	839, 1223, 2975, 3018, 3206
Bst2UI	CCWGG	6 cut(s)	63, 1162, 1170, 1259, 1269, 1937
Bst6I	CTCTTC	3 cut(s)	635, 942, 2827
BstACI	GRCGYC	2 cut(s)	21, 2474
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	3024
BstBAI	YACGTR	1 cut(s)	151
BstBI	TTCGAA	2 cut(s)	939, 2855
BstC8I	GCNNGC	9 cut(s)	12, 105, 109, 138, 920, 1902, 2523, 2834, 3322
BstDSI	CCRYGG	1 cut(s)	2975
BstFNI	CGCG	2 cut(s)	2030, 3033
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	6 cut(s)	23, 47, 113, 319, 382, 2032
BstMAI	GTCTC	2 cut(s)	263, 1794
BstNI	CCWGG	6 cut(s)	63, 1162, 1170, 1259, 1269, 1937
BstNSI	RCATGY	5 cut(s)	284, 897, 922, 1300, 2836
BstSFI	CTRYAG	3 cut(s)	789, 2205, 3039
BstSLI	GKGCMC	3 cut(s)	468, 2169, 2983
BstUI	CGCG	2 cut(s)	2030, 3033
BstX2I	RGATCY	6 cut(s)	373, 1252, 1387, 3047, 3094, 3243
BstXI	CCANNNNNNTGG	2 cut(s)	2785, 2903
BstYI	RGATCY	6 cut(s)	373, 1252, 1387, 3047, 3094, 3243
BsuI	GTATCC	1 cut(s)	2742
BtgI	CCRYGG	1 cut(s)	2975
BtrI	CACGTC	1 cut(s)	473
BtsIMutI	CAGTG	6 cut(s)	468, 1292, 1660, 2214, 2484, 2542
BveI	ACCTGC	3 cut(s)	529, 1030, 2992
Cac8I	GCNNGC	9 cut(s)	12, 105, 109, 138, 920, 1902, 2523, 2834, 3322
CaiI	CAGNNNCTG	2 cut(s)	1624, 2243
CciI	TCATGA	1 cut(s)	3172
CfoI	GCGC	6 cut(s)	23, 47, 113, 319, 382, 2032
Cfr10I	RCCGGY	2 cut(s)	10, 136
Cfr13I	GGNCC	9 cut(s)	116, 144, 292, 564, 1939, 2306, 2545, 2972, 3133
Cfr9I	CCCGGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	1145, 2463
Csp6I	GTAC	5 cut(s)	157, 880, 967, 975, 3025
CviQI	GTAC	5 cut(s)	157, 880, 967, 975, 3025
DinI	GGCGCC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	1453, 2775
Eam1104I	CTCTTC	3 cut(s)	635, 942, 2827
EarI	CTCTTC	3 cut(s)	635, 942, 2827
EciI	GGCGGA	3 cut(s)	305, 560, 2979
Eco130I	CCWWGG	5 cut(s)	839, 1223, 2975, 3018, 3206
Eco147I	AGGCCT	1 cut(s)	1984
Eco24I	GRGCYC	1 cut(s)	1514
Eco47I	GGWCC	5 cut(s)	144, 292, 564, 1939, 3133
Eco57I	CTGAAG	7 cut(s)	729, 966, 1129, 1649, 1829, 2484, 2568
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	2 cut(s)	540, 1978
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	2508
EcoRII	CCWGG	6 cut(s)	61, 1160, 1168, 1257, 1267, 1935
EcoT14I	CCWWGG	5 cut(s)	839, 1223, 2975, 3018, 3206
EcoT22I	ATGCAT	2 cut(s)	771, 1347
EcoT38I	GRGCYC	1 cut(s)	1514
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	5 cut(s)	839, 1223, 2975, 3018, 3206
FalI	AAGNNNNNCTT	2 cut(s)	2496, 2528
FaqI	GGGAC	8 cut(s)	157, 970, 1064, 1143, 1600, 1951, 2187, 3135
FauI	CCCGC	3 cut(s)	133, 1924, 3261
FbaI	TGATCA	1 cut(s)	1480
FriOI	GRGCYC	1 cut(s)	1514
FspBI	CTAG	4 cut(s)	846, 914, 2490, 3191
FspI	TGCGCA	2 cut(s)	46, 318
GlaI	GCGC	6 cut(s)	22, 46, 112, 318, 381, 2031
GsaI	CCCAGC	4 cut(s)	1068, 1621, 1924, 2247
GsuI	CTGGAG	2 cut(s)	1401, 1919
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	8 cut(s)	11, 24, 92, 114, 137, 541, 1570, 2163
HgaI	GACGC	2 cut(s)	1145, 2463
HhaI	GCGC	6 cut(s)	23, 47, 113, 319, 382, 2032
Hin1I	GRCGYC	2 cut(s)	21, 2474
Hin6I	GCGC	6 cut(s)	21, 45, 111, 317, 380, 2030
HinP1I	GCGC	6 cut(s)	21, 45, 111, 317, 380, 2030
HindIII	AAGCTT	4 cut(s)	1276, 1865, 2123, 3318
HinfI	GANTC	8 cut(s)	235, 659, 950, 1055, 2175, 2494, 2758, 2936
HpaII	CCGG	8 cut(s)	11, 24, 92, 114, 137, 541, 1570, 2163
HphI	GGTGA	6 cut(s)	136, 265, 668, 1244, 2280, 2800
Hpy166II	GTNNAC	5 cut(s)	127, 157, 2482, 3025, 3223
Hpy8I	GTNNAC	5 cut(s)	127, 157, 2482, 3025, 3223
Hpy99I	CGWCG	3 cut(s)	38, 474, 3108
HpyAV	CCTTC	7 cut(s)	272, 504, 577, 829, 957, 1243, 1995
HpyCH4IV	ACGT	3 cut(s)	150, 472, 1534
HpySE526I	ACGT	3 cut(s)	150, 472, 1534
Hsp92I	GRCGYC	2 cut(s)	21, 2474
HspAI	GCGC	6 cut(s)	21, 45, 111, 317, 380, 2030
KasI	GGCGCC	1 cut(s)	20
KflI	GGGWCCC	1 cut(s)	144
KroI	GCCGGC	2 cut(s)	10, 136
KroNI	GCCGGC	2 cut(s)	12, 138
Ksp22I	TGATCA	1 cut(s)	1480
LweI	GCATC	8 cut(s)	56, 346, 1735, 1750, 2041, 2851, 2994, 3246
MaeI	CTAG	4 cut(s)	846, 914, 2490, 3191
MaeII	ACGT	3 cut(s)	150, 472, 1534
MaeIII	GTNAC	8 cut(s)	271, 758, 1108, 1818, 1857, 1884, 2075, 2432
MboII	GAAGA	9 cut(s)	652, 735, 959, 1135, 1302, 1655, 1685, 2565, 2814
MflI	RGATCY	6 cut(s)	373, 1252, 1387, 3047, 3094, 3243
MhlI	GDGCHC	5 cut(s)	468, 1514, 2169, 2983, 3309
MlsI	TGGCCA	2 cut(s)	1455, 2777
MluNI	TGGCCA	2 cut(s)	1455, 2777
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	3 cut(s)	959, 2169, 2930
MmeI	TCCRAC	3 cut(s)	1954, 2476, 3175
Mox20I	TGGCCA	2 cut(s)	1455, 2777
Mph1103I	ATGCAT	2 cut(s)	771, 1347
MreI	CGCCGGCG	2 cut(s)	10, 136
MroNI	GCCGGC	2 cut(s)	10, 136
MroXI	GAANNNNTTC	1 cut(s)	2447
MscI	TGGCCA	2 cut(s)	1455, 2777
MseI	TTAA	1 cut(s)	3087
MslI	CAYNNNNRTG	4 cut(s)	1997, 3020, 3056, 3177
Msp20I	TGGCCA	2 cut(s)	1455, 2777
MspA1I	CMGCKG	6 cut(s)	121, 788, 2231, 2543, 2970, 3001
MspI	CCGG	8 cut(s)	11, 24, 92, 114, 137, 541, 1570, 2163
Mva1269I	GAATGC	4 cut(s)	1179, 1345, 2424, 3349
MvaI	CCWGG	6 cut(s)	63, 1162, 1170, 1259, 1269, 1937
MvnI	CGCG	2 cut(s)	2030, 3033
NaeI	GCCGGC	2 cut(s)	12, 138
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	6 cut(s)	92, 115, 541, 542, 1570, 2164
NcoI	CCATGG	1 cut(s)	2975
NgoMIV	GCCGGC	2 cut(s)	10, 136
NmeAIII	GCCGAG	1 cut(s)	1375
NmuCI	GTSAC	4 cut(s)	271, 758, 1884, 2075
NsbI	TGCGCA	2 cut(s)	46, 318
NsiI	ATGCAT	2 cut(s)	771, 1347
NspI	RCATGY	5 cut(s)	284, 897, 922, 1300, 2836
NspV	TTCGAA	2 cut(s)	939, 2855
OliI	CACNNNNGTG	1 cut(s)	3020
PaeI	GCATGC	2 cut(s)	922, 2836
PaeR7I	CTCGAG	1 cut(s)	1978
PagI	TCATGA	1 cut(s)	3172
PaqCI	CACCTGC	2 cut(s)	529, 2992
PasI	CCCWGGG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	1984
PctI	GAATGC	4 cut(s)	1179, 1345, 2424, 3349
PdiI	GCCGGC	2 cut(s)	12, 138
PdmI	GAANNNNTTC	1 cut(s)	2447
PfeI	GAWTC	5 cut(s)	235, 659, 1055, 2494, 2758
PflMI	CCANNNNNTGG	1 cut(s)	2429
PfoI	TCCNGGA	1 cut(s)	1935
PleI	GAGTC	3 cut(s)	958, 2169, 2930
PluTI	GGCGCC	1 cut(s)	24
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	3 cut(s)	958, 2169, 2930
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	6 cut(s)	61, 1160, 1168, 1257, 1267, 1935
PspCI	CACGTG	1 cut(s)	151
PspFI	CCCAGC	4 cut(s)	1064, 1617, 1920, 2243
PspGI	CCWGG	6 cut(s)	61, 1160, 1168, 1257, 1267, 1935
PspPI	GGNCC	9 cut(s)	116, 144, 292, 564, 1939, 2306, 2545, 2972, 3133
PspPPI	RGGWCCY	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	2 cut(s)	1624, 2243
PsuI	RGATCY	6 cut(s)	373, 1252, 1387, 3047, 3094, 3243
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	5 cut(s)	158, 881, 968, 976, 3026
RsaNI	GTAC	5 cut(s)	157, 880, 967, 975, 3025
RseI	CAYNNNNRTG	4 cut(s)	1997, 3020, 3056, 3177
SaqAI	TTAA	1 cut(s)	3087
Sau96I	GGNCC	9 cut(s)	116, 144, 292, 564, 1939, 2306, 2545, 2972, 3133
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	3 cut(s)	959, 2169, 2930
SduI	GDGCHC	5 cut(s)	468, 1514, 2169, 2983, 3309
SfaNI	GCATC	8 cut(s)	56, 346, 1735, 1750, 2041, 2851, 2994, 3246
SfcI	CTRYAG	3 cut(s)	789, 2205, 3039
SfoI	GGCGCC	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	1978
SfuI	TTCGAA	2 cut(s)	939, 2855
SgrAI	CRCCGGYG	2 cut(s)	10, 136
SinI	GGWCC	5 cut(s)	144, 292, 564, 1939, 3133
SlaI	CTCGAG	1 cut(s)	1978
SmaI	CCCGGG	1 cut(s)	542
SmiMI	CAYNNNNRTG	4 cut(s)	1997, 3020, 3056, 3177
SmlI	CTYRAG	4 cut(s)	165, 383, 1600, 1978
SmoI	CTYRAG	4 cut(s)	165, 383, 1600, 1978
SphI	GCATGC	2 cut(s)	922, 2836
SseBI	AGGCCT	1 cut(s)	1984
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	2 cut(s)	2221, 2394
SspMI	CTAG	4 cut(s)	846, 914, 2490, 3191
StuI	AGGCCT	1 cut(s)	1984
StyI	CCWWGG	5 cut(s)	839, 1223, 2975, 3018, 3206
TaiI	ACGT	3 cut(s)	153, 475, 1537
TaqI	TCGA	6 cut(s)	501, 939, 1979, 2855, 2930, 3103
TaqII	GACCGA	2 cut(s)	1570, 3150
TatI	WGTACW	3 cut(s)	156, 879, 3024
TauI	GCSGC	8 cut(s)	10, 121, 136, 191, 806, 2546, 2973, 3297
TfiI	GAWTC	5 cut(s)	235, 659, 1055, 2494, 2758
Tru1I	TTAA	1 cut(s)	3087
Tru9I	TTAA	1 cut(s)	3087
TscAI	CASTG	6 cut(s)	468, 1292, 1660, 2214, 2484, 2542
TseFI	GTSAC	4 cut(s)	271, 758, 1884, 2075
Tsp45I	GTSAC	4 cut(s)	271, 758, 1884, 2075
TspGWI	ACGGA	3 cut(s)	22, 652, 2706
TspMI	CCCGGG	1 cut(s)	540
TspRI	CASTG	6 cut(s)	468, 1292, 1660, 2214, 2484, 2542
Van91I	CCANNNNNTGG	1 cut(s)	2429
VpaK11BI	GGWCC	5 cut(s)	144, 292, 564, 1939, 3133
XapI	RAATTY	6 cut(s)	407, 777, 1306, 1576, 2508, 2851
XceI	RCATGY	5 cut(s)	284, 897, 922, 1300, 2836
XcmI	CCANNNNNNNNNTGG	5 cut(s)	581, 1265, 1376, 1652, 2680
XhoI	CTCGAG	1 cut(s)	1978
XmaI	CCCGGG	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	2447
XspI	CTAG	4 cut(s)	846, 914, 2490, 3191
ZrmI	AGTACT	1 cut(s)	881
Zsp2I	ATGCAT	2 cut(s)	771, 1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.