Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Reverse (-)

851796 .. 855997

Gene Structure 4202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0004200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGAGAAAGCGATCAACAGGCAGAAGGTTCTCCTTGACCACCTCCGACCTTCTTCTTCTACCGACGACTCCTCTCTCTCCGCGTCGGCATGTGCCGCTGGGGATAGTGCTGCCTATGCAAGGACAAACGTGTTTGGGGATGATGTCGTTATTGTAGCAGCTTATCGCACTCCACTCTGCAAGGCCAAACGCGGTGGCTTCAAAGATACTCATGCCGATGATCTTCTCGCACCTGTTCTCAAGGCAGTGATTGAGAAAACCAATCTGAATCCAAAGGAAGTTGGGGATATTGTTGTCGGTTCCGTGCTGGCTCCCGGATCTCAAAGAGCTAGCGAATGCAGGATGGCTGCTTTCTATGCTGGCTTCCCTGAAACTGTGCCGGTTAGAACTGTGAACAGACAATGTTCGTCTGGGCTTCAAGCAGTTGCTGATGTAGCTGCTTCTATAAGAGCAGGGTTTTATGACATTGGTATTGGAGCTGGGTTGGAATCCATGACTGCAAACCCAATGGCATGGGAAGGGGATGTTAATCCTAAAGTAAAGATCTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGGATCACCTCGGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGATTGTTGATCCAAAATCTGGTGATGAGAAACCTGTTACAATCTCTGTTGATGATGGGATTCGAAACACTACATTGTCGGACCTAGCAAAGCTGAAGCCTGTGTTTAAGAAAGATGGGACCACCACTGCTGGTAATTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTGCCGACCAAAAAGGAATTCCAATTCTTGGTGTATTCAGGAGTTTCGTTGCTGTTGGTGTGGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCAGTCAAGGCAGCTGGTTTAGAGCTTGATGATATTGACCTTTTTGAGATAAATGAGGCTTTTGCTTCCCAATTTGTGTATTGCCGTAACAAGCTAGGACTTGATCCAGAAAAAATCAATGTTAATGGAGGTGCAATGGCCATTGGCCATCCACTTGGTGCAACAGGTGCCCGTTGTGTTGCCACTCTTTTGCACGAGATGAAGCGTCGGGGAAAAGACTGCCGCTATGGAGTGATCTCAATGTGCATAGGCACAGGGATGGGTGCAGCTGCTGTTTTTGAAAGGGGGGACCGCACTGATGAACTCTGCAATGCTCGCAAGGTTGAATCCCTCAATTTTTTATCCAAGGATGCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

458

Amino Acids

48.22

Weight (kDa)

7.52

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	49 - 303	4.2e-78	Thiolase, N-terminal domain
Thiolase_C	PF02803	312 - 434	3.3e-48	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1184
AccB7I	CCANNNNNTGG	2 cut(s)	740, 938
AccII	CGCG	2 cut(s)	83, 192
AciI	CCGC	5 cut(s)	81, 96, 192, 1240, 1309
AclWI	GGATC	6 cut(s)	325, 590, 725, 968, 981, 1115
AcoI	YGGCCR	2 cut(s)	1155, 1162
AcsI	RAATTY	1 cut(s)	927
AcuI	CTGAAG	1 cut(s)	836
AdeI	CACNNNGTG	1 cut(s)	1175
AfiI	CCNNNNNNNGG	3 cut(s)	120, 740, 938
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	6 cut(s)	202, 419, 551, 621, 1298, 1343
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AlwI	GGATC	6 cut(s)	325, 590, 725, 968, 981, 1115
AlwNI	CAGNNNCTG	4 cut(s)	428, 671, 1004, 1289
AoxI	GGCC	4 cut(s)	183, 994, 1155, 1162
ApoI	RAATTY	1 cut(s)	927
AspS9I	GGNCC	4 cut(s)	802, 840, 995, 1306
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	577, 755
AsuII	TTCGAA	1 cut(s)	784
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	3 cut(s)	802, 840, 1306
BaeGI	GKGCMC	1 cut(s)	1189
BalI	TGGCCA	2 cut(s)	1157, 1164
BamHI	GGATCC	1 cut(s)	973
BanI	GGYRCC	1 cut(s)	1184
BauI	CACGAG	1 cut(s)	1211
BccI	CCATC	7 cut(s)	337, 770, 830, 869, 989, 1173, 1270
BceAI	ACGGC	1 cut(s)	1086
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	4 cut(s)	330, 806, 861, 1112
BfmI	CTRYAG	1 cut(s)	642
BglII	AGATCT	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	3 cut(s)	802, 840, 1306
BmgT120I	GGNCC	4 cut(s)	802, 840, 995, 1306
BmiI	GGNNCC	6 cut(s)	301, 312, 841, 975, 1186, 1307
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	1357
BmtI	GCTAGC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	876, 908
BpmI	CTGGAG	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	784
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	588, 1362
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 740, 938
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	1013
Bse3DI	GCAATG	2 cut(s)	1158, 1333
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	588, 1362
BseGI	GGATG	6 cut(s)	145, 348, 529, 1165, 1281, 1372
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	120, 740, 938
BseMI	GCAATG	2 cut(s)	1158, 1333
BseNI	ACTGG	1 cut(s)	1013
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	1189
BseYI	CCCAGC	3 cut(s)	98, 479, 997
BsgI	GTGCAG	1 cut(s)	1302
Bsh1236I	CGCG	2 cut(s)	83, 192
BshFI	GGCC	4 cut(s)	185, 996, 1157, 1164
BshNI	GGYRCC	1 cut(s)	1184
BsiSI	CCGG	2 cut(s)	315, 380
BslFI	GGGAC	2 cut(s)	853, 1319
BslI	CCNNNNNNNGG	3 cut(s)	120, 740, 938
BsmFI	GGGAC	2 cut(s)	853, 1319
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	185, 996, 1157, 1164
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	1189
BspACI	CCGC	5 cut(s)	81, 96, 192, 1240, 1309
BspANI	GGCC	4 cut(s)	185, 996, 1157, 1164
BspFNI	CGCG	2 cut(s)	83, 192
BspLI	GGNNCC	6 cut(s)	301, 312, 841, 975, 1186, 1307
BspMAI	CTGCAG	1 cut(s)	646
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	6 cut(s)	325, 590, 725, 968, 981, 1115
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	1184
BsrDI	GCAATG	2 cut(s)	1158, 1333
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	1013
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	588, 1362
BssSI	CACGAG	1 cut(s)	1211
BssT1I	CCWWGG	1 cut(s)	1362
Bst2BI	CACGAG	1 cut(s)	1211
Bst4CI	ACNGT	2 cut(s)	376, 391
Bst6I	CTCTTC	1 cut(s)	896
BstAPI	GCANNNNNTGC	2 cut(s)	671, 1184
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	4 cut(s)	309, 331, 361, 1333
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	6 cut(s)	145, 348, 529, 1165, 1281, 1372
BstFNI	CGCG	2 cut(s)	83, 192
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	1189
BstUI	CGCG	2 cut(s)	83, 192
BstX2I	RGATCY	3 cut(s)	317, 543, 973
BstXI	CCANNNNNNTGG	2 cut(s)	513, 1172
BstYI	RGATCY	3 cut(s)	317, 543, 973
BsuRI	GGCC	4 cut(s)	185, 996, 1157, 1164
BtsCI	GGATG	6 cut(s)	145, 348, 529, 1165, 1281, 1372
BtsI	GCAGTG	2 cut(s)	252, 846
BtsIMutI	CAGTG	3 cut(s)	252, 846, 1311
Cac8I	GCNNGC	4 cut(s)	309, 331, 361, 1333
CaiI	CAGNNNCTG	4 cut(s)	428, 671, 1004, 1289
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	802, 840, 995, 1306
CseI	GACGC	2 cut(s)	72, 1211
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	5 cut(s)	90, 212, 493, 513, 985
DraI	TTTAAA	1 cut(s)	694
DraIII	CACNNNGTG	1 cut(s)	1175
EaeI	YGGCCR	2 cut(s)	1155, 1162
Eam1104I	CTCTTC	1 cut(s)	896
EarI	CTCTTC	1 cut(s)	896
Eco130I	CCWWGG	1 cut(s)	1362
Eco47I	GGWCC	3 cut(s)	802, 840, 1306
Eco57I	CTGAAG	1 cut(s)	836
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	927
EcoT14I	CCWWGG	1 cut(s)	1362
ErhI	CCWWGG	1 cut(s)	1362
FaeI	CATG	5 cut(s)	93, 215, 496, 516, 988
FaqI	GGGAC	2 cut(s)	853, 1319
FatI	CATG	5 cut(s)	89, 211, 492, 512, 984
FokI	GGATG	5 cut(s)	152, 355, 536, 1152, 1288
FspBI	CTAG	4 cut(s)	330, 806, 861, 1112
GsaI	CCCAGC	3 cut(s)	102, 483, 1001
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	4 cut(s)	185, 996, 1157, 1164
HapII	CCGG	2 cut(s)	315, 380
HgaI	GACGC	2 cut(s)	72, 1211
Hin1II	CATG	5 cut(s)	93, 215, 496, 516, 988
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	6 cut(s)	68, 268, 488, 650, 781, 1343
HpaII	CCGG	2 cut(s)	315, 380
HphI	GGTGA	2 cut(s)	577, 755
Hpy166II	GTNNAC	2 cut(s)	394, 649
Hpy188I	TCNGA	4 cut(s)	47, 267, 592, 802
Hpy188III	TCNNGA	3 cut(s)	895, 949, 1124
Hpy8I	GTNNAC	2 cut(s)	394, 649
Hpy99I	CGWCG	3 cut(s)	68, 88, 1227
HpyAV	CCTTC	4 cut(s)	19, 60, 512, 578
HpyCH4III	ACNGT	2 cut(s)	376, 391
HpyCH4IV	ACGT	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	93, 215, 496, 516, 988
LmnI	GCTCC	4 cut(s)	316, 476, 628, 884
LweI	GCATC	1 cut(s)	1357
MaeI	CTAG	4 cut(s)	330, 806, 861, 1112
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	757, 1103
MboII	GAAGA	5 cut(s)	45, 48, 215, 563, 913
MflI	RGATCY	3 cut(s)	317, 543, 973
MhlI	GDGCHC	1 cut(s)	1189
MlsI	TGGCCA	2 cut(s)	1157, 1164
MluCI	AATT	8 cut(s)	562, 702, 856, 927, 933, 1008, 1088, 1351
MluNI	TGGCCA	2 cut(s)	1157, 1164
MlyI	GAGTC	2 cut(s)	62, 644
MmeI	TCCRAC	3 cut(s)	70, 465, 780
MnlI	CCTC	6 cut(s)	53, 82, 598, 1066, 1139, 1358
Mox20I	TGGCCA	2 cut(s)	1157, 1164
MscI	TGGCCA	2 cut(s)	1157, 1164
MseI	TTAA	4 cut(s)	528, 693, 828, 1140
MslI	CAYNNNNRTG	2 cut(s)	216, 1274
Msp20I	TGGCCA	2 cut(s)	1157, 1164
MspA1I	CMGCKG	5 cut(s)	98, 668, 1001, 1031, 1286
MspI	CCGG	2 cut(s)	315, 380
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	2 cut(s)	83, 192
NciI	CCSGG	1 cut(s)	315
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	5 cut(s)	93, 215, 496, 516, 988
NlaIV	GGNNCC	6 cut(s)	301, 312, 841, 975, 1186, 1307
NspI	RCATGY	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	784
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	268, 488, 781, 1343
PflMI	CCANNNNNTGG	2 cut(s)	740, 938
PfoI	TCCNGGA	1 cut(s)	313
PleI	GAGTC	2 cut(s)	62, 644
PpsI	GAGTC	2 cut(s)	62, 644
PspFI	CCCAGC	3 cut(s)	98, 479, 997
PspN4I	GGNNCC	6 cut(s)	301, 312, 841, 975, 1186, 1307
PspPI	GGNCC	4 cut(s)	802, 840, 995, 1306
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	4 cut(s)	428, 671, 1004, 1289
PsuI	RGATCY	3 cut(s)	317, 543, 973
PvuII	CAGCTG	4 cut(s)	668, 1001, 1031, 1286
RseI	CAYNNNNRTG	2 cut(s)	216, 1274
SaqAI	TTAA	4 cut(s)	528, 693, 828, 1140
Sau96I	GGNCC	4 cut(s)	802, 840, 995, 1306
SchI	GAGTC	2 cut(s)	62, 644
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	1189
SfaNI	GCATC	1 cut(s)	1357
SfcI	CTRYAG	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	784
SinI	GGWCC	3 cut(s)	802, 840, 1306
SmiMI	CAYNNNNRTG	2 cut(s)	216, 1274
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	8 cut(s)	562, 702, 856, 927, 933, 1008, 1088, 1351
SsiI	CCGC	5 cut(s)	81, 96, 192, 1240, 1309
SspMI	CTAG	4 cut(s)	330, 806, 861, 1112
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	1362
TaaI	ACNGT	2 cut(s)	376, 391
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	784
TasI	AATT	8 cut(s)	562, 702, 856, 927, 933, 1008, 1088, 1351
TauI	GCSGC	2 cut(s)	98, 1242
TfiI	GAWTC	4 cut(s)	268, 488, 781, 1343
Tru1I	TTAA	4 cut(s)	528, 693, 828, 1140
Tru9I	TTAA	4 cut(s)	528, 693, 828, 1140
TscAI	CASTG	3 cut(s)	252, 853, 1318
TspDTI	ATGAA	4 cut(s)	714, 914, 1232, 1332
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	252, 853, 1318
Van91I	CCANNNNNTGG	2 cut(s)	740, 938
VpaK11BI	GGWCC	3 cut(s)	802, 840, 1306
XagI	CCTNNNNNAGG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	927
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	4 cut(s)	330, 806, 861, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.