Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0013652

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG078200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3384 bp

ATGAAGCAGCCGGCGAAGGGAGGTTCGTCCGGCGCCGCCGCACTCAATTCCGGCGAAGGCGGAGAGAATGTGAAGATCATAAACCCGGAGCTATGGCAGGCCTGCGCCGGGCCGCTGGTGAACTTGCCGCCGGCCGGGACCCACGTGGTGTACTTCCCTCAAGGCCACAGCGAACAGGTTGCTGCTTCTATGAAAAAGGATGTTGATGCTCAAATTCCAAACTATCCAAATCTTCCCTCCAAGCTGCTATGTCTCCTTCACAATGTCACCTTGCATGCGGACCCCGAAACGGACGAAGTTTATGCTCAGATGACACTTCAACCTGTACCCTCATTTGACAAGGACGCATTATTGAGATCAGATCTTGCCCTGAAGTCCAATAAGCCCCAACCAGAGTTTTTCTGTAAAACATTGACTGCCAGTGATACAAGCACTCATGGAGGTTTCTCTGTTCCCCGCCGTGCAGCACAGAAGATTTTTCCTCCTCTTGATTTCAACATGCAACCACCTGCTCAAGAACTCGCTGCCAGGGATTTGCATGATACTGTTTGGACCTTCCGTCATATCTATCGGGGACAACCAAAACGCCACTTGCTTACGACAGGATGGAGCCTATTTGTTAGTGGGAAGAGGCTTTTTGCTGGTGATGCTGTCTTGTTCATTAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGACGTACTAACAGGCAACCAACCAACCTATCATCATCAGTTTTGTCAAGTGACAGTATGCATATTGGGATTTTGGCCGCTGCAGCTCATGCTGCTGCGAACAATAGCCCCTTCACGGTGTTCTATAATCCTAGGGCTAGTCCATCAGAATTTGTTATCCCTTTGGCTAAGTACTACAAGGCAGTTTGTGCGAACCAACTATCATTGGGCATGCGCTTTCGTATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGTACATGGGTACAATTACAGGGATCAGTGATCTTGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTCGGTTGGGACGAGTCAACTTCTGGGGAAAGGCGTAATCGGGTATCAATCTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCATCTGTCCCCCACCATTCTTCAGGTCGAAGCGGCCTAGGCAACCAGGAATGCCAGATGATGAATCCTCTGATCTAGATAACCTTTTTAAAAGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAGGTGCTACCTGGTCTAAGCTTAGTCCAGTGGATGAACATGCAGCAAAATTCTTCTGTGGCTAGCTCCATGCAGCCAAATTATATGCACCCTTCATTTTCTGGTTCTGTTATGCAAAACCTTGCTGGTGTGGATCTTTCTCGGCAGATGGGCTTGTCAGCGCCTCAAATACCTCAGCCAAATAATCTACAGTTCAATGCTCAGAGGTTACCTCAGCAAGTGCAACAGCTTGACCAACTTCCAAATATGCAGTCCACTGTGAACCCAATAGCATCCATGGTACAACGACAGCAACAGTTGGGTGATATGACACAAGTACCCAGGCAAAATTTGGTTAATCAAAGTCTACCGTCCAGCCAAGCTCAGTCCCCGCTTCTGCAACCTCAGTCCCTTGCCCAAGCTAACAGTATTCTTCAGCAGCAATCATCTACACAAAATCAACTTCAAAGAAACCTTCCTCAGAACTTGCAGCAGCACCAACAACAACAACAGCAACAACATCAACAGCAGCACCAGCAGCATCAACAACAAAATGTGGGTCAAAATCAACAGCAAAATTTTATTCAGACTCCACAGCCTGATCAATTGAACCAACAGTTACACCATCTTTCTGATAATCAGCTTCAACTTCAACTATTACAGAAGCTTCAGCAGCACCAGCAATCATACCTCGCTCAGCAGGCACTGCAACAACAGCCTACTCAACTTCTCCAGCTCCAGGACCAGCAGAGGCATCTGTTAGATGCGTCTCAGAGCTTCCCGAGGCCCTCAACTCCTAGCCAAATGCAAGATATGCCTCTATCAGCACCGACCTCACATCCTCAGTCAAGAGCTATGCCACAGCAGATGACTGTTAATAATATTAGCCAACCTAATGGTCGGTTCTTGCATCCACAGCCGCAGCCAAAGCTTCAACAGCAGCAACCTGGTATGCTGGCTGAAATGTCCGGGCATATGGGACTTCCTCCAACTGGAACAACCAATCAGCTCTCTAGAGCTGGTAGCGGTATTATGGCAGGAGTTGCAGGAGCAGGGCAGTCCGGGTTAACAGATGAGGTTCCATCATGTTCCACTTCACCCTCCACAAACAACTGTCCAACCGTAATTCAACCATTGATGAACAACAGGGGCCATCGAAACTCATTAACTGGGGAGGACATGGCTCAGTCTGCCAACATGGTTATAAGCTCAAGTGCCTTGGAAACAATGCCATCTAATGGTAACTTAGTGAAAGGGTTTCAGCATAAGTCTGAAGTCAAGCCTTCAGTGAACATCACTAGGAATCAAAGTCAAGGGATGCTTAACCCACAAACATACCTGAATGGTGCAGCTGCCCAAACAGTTTACTTGGACACTTCATCTTCAACAACTTCAGCGGGCCTCTCTCAGAATGATGTCCATTTACAGCACAATAATACCCCGTTGACTTTCAATCCACAGTCAATGTTGTTCAGAGAACCTAGTCAAGAAGTGGAAGTCCAGGTCGATCAGAGAAACAATGTTTCATATGGTTCTAACATTGATAGCCAATTGGGAATACCCTTGAGTTCTGATCCTTTGTTGGAAAAGGGCATGGTGGGGATAGGAAGGGATTTTACAAATAATCTCTCTTCAGGCATGCTTGGCAACTTTGAAAATTCAAAAGATGCTCAGCAGGAGCTTTCTTCTTCAATGGTTTCCCAGTCCTTTGGAGTTCCAGATATGACATTTCAGTCAATTGACTCCACTATAAATGACAGCAGTTTTCTGGACAGTGCCCCATGGGCACCAGCAGCACAATTTCAGCGGCTGCGGACATACACCAAGGTATACAAACGTGGAGCTGTTGGGAGATCTATAGATATTACACGCTATTCCGGTTATGATGATCTCAAACATGATCTGGCTCGTCGGTTTGGCATAGAAGGACAGCTAGAGGACCGAGGGAGAGTAGGTTGGAAACTAGTTTATGTAGATCATGAGAGTGATGTTCTGCTAGTTGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTTCGGTGCATCAAGATTCTGTCCCCACAAGAAGTCCAGCAGATGAGCTTGGATGGAGACTTTGGGGGCAACGCAGTGCTTCCAAATCAAGCTTGCAGCAGCTCGGACGGCGGAAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

1127

Amino Acids

124.83

Weight (kDa)

6.41

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	134 - 235	2.9e-19	B3 DNA binding domain
ARF_AD	PF06507	283 - 366	3e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	1062 - 1099	5.6e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06190
malus_domestica	MD13G1234500.v1.1 MD16G1239300.v1.1
prunus_persica	Prupe.1G065300_v2.0.a1 Prupe.1G065300_v2.0.a1
pyrus_communis	pycom13g20640 pycom16g20020
rosa_chinensis	RchiOBHm_Chr4g0397771
rosa_laevigata	RLG00000009414
rosa_multiflora	Rmu_sc0004527.1_g000004
rosa_roxburghii	Rroxscaffold_5G00342570
rosa_rugosa	Rorug04G0004100 Rorug04G0004100 Rorug04G0004200
rosa_samantha	Rh4AG080600 Rh4BG078200 Rh4DG073600
rosa_wichuraiana	Rw4G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2432
AarI	CACCTGC	1 cut(s)	517
AasI	GACNNNNNNGTC	1 cut(s)	2959
Acc36I	ACCTGC	2 cut(s)	517, 1018
AccB1I	GGYRCC	2 cut(s)	32, 3013
AccB7I	CCANNNNNTGG	1 cut(s)	2465
AccI	GTMKAC	2 cut(s)	1594, 3057
AclWI	GGATC	6 cut(s)	983, 983, 1238, 1251, 1389, 2795
AcoI	YGGCCR	2 cut(s)	132, 771
AcsI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2884
AcuI	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1880, 2496, 2520, 2604, 2844
AcvI	CACGTG	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	8 cut(s)	152, 327, 703, 869, 956, 964, 1530, 1566
AhdI	GACNNNNNGTC	1 cut(s)	558
AhlI	ACTAGT	1 cut(s)	3190
AjnI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2727
Alw26I	GTCTC	3 cut(s)	257, 2001, 3312
AlwI	GGATC	6 cut(s)	983, 983, 1238, 1251, 1389, 2795
AlwNI	CAGNNNCTG	2 cut(s)	1933, 3037
Ama87I	CYCGRG	1 cut(s)	2008
AoxI	GGCC	9 cut(s)	99, 110, 132, 163, 771, 1145, 2012, 2377, 2626
ApoI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2884
ArsI	GACNNNNNNTTYG	4 cut(s)	1484, 1516, 1771, 1803
AspA2I	CCTAGG	2 cut(s)	827, 1148
AspLEI	GCGC	4 cut(s)	35, 107, 912, 1411
AspS9I	GGNCC	9 cut(s)	110, 138, 280, 552, 1969, 2013, 2377, 2626, 3166
AsuC2I	CCSGG	5 cut(s)	86, 109, 136, 2197, 2290
AsuHPI	GGTGA	6 cut(s)	130, 259, 656, 1235, 1562, 2316
AsuNHI	GCTAGC	1 cut(s)	1310
AvaI	CYCGRG	1 cut(s)	2008
AvaII	GGWCC	5 cut(s)	138, 280, 552, 1969, 3166
AvrII	CCTAGG	2 cut(s)	827, 1148
BaeGI	GKGCMC	2 cut(s)	3007, 3016
BaeI	ACNNNNGTAYC	4 cut(s)	946, 979, 1548, 1581
BamHI	GGATCC	1 cut(s)	1243
BanI	GGYRCC	2 cut(s)	32, 3013
BarI	GAAGNNNNNNTAC	2 cut(s)	2827, 2859
BbrPI	CACGTG	1 cut(s)	145
BbvCI	CCTCAGC	2 cut(s)	1422, 1461
BccI	CCATC	9 cut(s)	600, 847, 993, 1390, 1860, 2317, 2388, 2467, 3308
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	4 cut(s)	161, 195, 284, 318
BciT130I	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2729
BclI	TGATCA	1 cut(s)	1828
BcnI	CCSGG	5 cut(s)	86, 109, 136, 2197, 2290
BcoDI	GTCTC	3 cut(s)	257, 2001, 3312
BcuI	ACTAGT	1 cut(s)	3190
BfmI	CTRYAG	3 cut(s)	777, 1436, 3084
BfoI	RGCGCY	2 cut(s)	36, 1412
BfuAI	ACCTGC	2 cut(s)	517, 1018
BglI	GCCNNNNNGGC	1 cut(s)	3011
BglII	AGATCT	2 cut(s)	361, 3080
BlnI	CCTAGG	2 cut(s)	827, 1148
BlpI	GCTNAGC	2 cut(s)	1923, 2898
BmcAI	AGTACT	1 cut(s)	869
Bme18I	GGWCC	5 cut(s)	138, 280, 552, 1969, 3166
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	2008
BmgT120I	GGNCC	9 cut(s)	110, 138, 280, 552, 1969, 2013, 2377, 2626, 3166
BmiI	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2307, 2378, 3015
BmrI	ACTGGG	2 cut(s)	2406, 2923
BmtI	GCTAGC	1 cut(s)	1314
BmuI	ACTGGG	2 cut(s)	2406, 2923
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
BpmI	CTGGAG	2 cut(s)	1943, 1949
Bpu10I	CCTNAGC	2 cut(s)	1422, 1461
Bpu1102I	GCTNAGC	2 cut(s)	1923, 2898
BpuEI	CTTGAG	4 cut(s)	144, 498, 2422, 2812
BpuMI	CCSGG	5 cut(s)	86, 109, 136, 2197, 2290
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	3104
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 3166, 3196
Bse118I	RCCGGY	2 cut(s)	10, 130
Bse1I	ACTGG	5 cut(s)	420, 1276, 2224, 2401, 2929
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2729
BseGI	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2550, 3319
BseJI	GATNNNNATC	1 cut(s)	987
BseNI	ACTGG	5 cut(s)	420, 1276, 2224, 2401, 2929
BseRI	GAGGAG	2 cut(s)	474, 3260
BseSI	GKGCMC	2 cut(s)	3007, 3016
BseX3I	CGGCCG	1 cut(s)	132
BsgI	GTGCAG	2 cut(s)	483, 2595
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2014, 2379, 2628
BshNI	GGYRCC	2 cut(s)	32, 3013
BsiEI	CGRYCG	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	2008
BslFI	GGGAC	8 cut(s)	151, 588, 1052, 1104, 1600, 1621, 2220, 3268
BsmAI	GTCTC	3 cut(s)	257, 2001, 3312
BsmBI	CGTCTC	1 cut(s)	2001
BsmFI	GGGAC	8 cut(s)	151, 588, 1052, 1104, 1600, 1621, 2220, 3268
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2014, 2379, 2628
BsoBI	CYCGRG	1 cut(s)	2008
Bsp1286I	GDGCHC	2 cut(s)	3007, 3016
Bsp1720I	GCTNAGC	2 cut(s)	1923, 2898
Bsp19I	CCATGG	2 cut(s)	1524, 3008
BspANI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2014, 2379, 2628
BspHI	TCATGA	1 cut(s)	3205
BspLI	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2307, 2378, 3015
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	517, 1018
BspOI	GCTAGC	1 cut(s)	1314
BspPI	GGATC	6 cut(s)	983, 983, 1238, 1251, 1389, 2795
BspT107I	GGYRCC	2 cut(s)	32, 3013
BsrFI	RCCGGY	2 cut(s)	10, 130
BsrI	ACTGG	5 cut(s)	420, 1276, 2224, 2401, 2929
BssAI	RCCGGY	2 cut(s)	10, 130
BssNAI	GTATAC	1 cut(s)	3058
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2445, 3008, 3051, 3239
Bst1107I	GTATAC	1 cut(s)	3058
Bst2UI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2729
Bst6I	CTCTTC	3 cut(s)	623, 930, 2863
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	5 cut(s)	785, 884, 1933, 2041, 2270
BstBAI	YACGTR	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	1524, 3008
BstEII	GGTNACC	1 cut(s)	1455
BstF5I	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2550, 3319
BstH2I	RGCGCY	2 cut(s)	36, 1412
BstHHI	GCGC	4 cut(s)	35, 107, 912, 1411
BstMAI	GTCTC	3 cut(s)	257, 2001, 3312
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2729
BstNSI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2869
BstPI	GGTNACC	1 cut(s)	1455
BstSFI	CTRYAG	3 cut(s)	777, 1436, 3084
BstSLI	GKGCMC	2 cut(s)	3007, 3016
BstX2I	RGATCY	4 cut(s)	361, 1243, 1381, 3080
BstXI	CCANNNNNNTGG	2 cut(s)	2123, 2936
BstYI	RGATCY	4 cut(s)	361, 1243, 1381, 3080
BstZ17I	GTATAC	1 cut(s)	3058
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2014, 2379, 2628
BtgI	CCRYGG	2 cut(s)	1524, 3008
BtsCI	GGATG	9 cut(s)	205, 611, 673, 1287, 1520, 2065, 2137, 2550, 3319
BtsI	GCAGTG	2 cut(s)	1931, 3342
BtsIMutI	CAGTG	8 cut(s)	427, 985, 1283, 1503, 1931, 2520, 3007, 3342
BveI	ACCTGC	2 cut(s)	517, 1018
CaiI	CAGNNNCTG	2 cut(s)	1933, 3037
CciI	TCATGA	1 cut(s)	3205
CfoI	GCGC	4 cut(s)	35, 107, 912, 1411
Cfr10I	RCCGGY	2 cut(s)	10, 130
Cfr13I	GGNCC	9 cut(s)	110, 138, 280, 552, 1969, 2013, 2377, 2626, 3166
CseI	GACGC	2 cut(s)	353, 1983
CsiI	ACCWGGT	2 cut(s)	1258, 2173
Csp6I	GTAC	8 cut(s)	151, 326, 702, 868, 955, 963, 1529, 1565
CviQI	GTAC	8 cut(s)	151, 326, 702, 868, 955, 963, 1529, 1565
DinI	GGCGCC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	1201
DraIII	CACNNNGTG	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	2959
DriI	GACNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	2959
EaeI	YGGCCR	2 cut(s)	132, 771
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	623, 930, 2863
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	3 cut(s)	623, 930, 2863
EciI	GGCGGA	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2445, 3008, 3051, 3239
Eco147I	AGGCCT	1 cut(s)	101
Eco47I	GGWCC	5 cut(s)	138, 280, 552, 1969, 3166
Eco52I	CGGCCG	1 cut(s)	132
Eco57I	CTGAAG	9 cut(s)	392, 954, 1117, 1646, 1880, 2496, 2520, 2604, 2844
Eco72I	CACGTG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	2008
Eco91I	GGTNACC	1 cut(s)	1455
EcoO109I	RGGNCCY	2 cut(s)	138, 2013
EcoO65I	GGTNACC	1 cut(s)	1455
EcoRII	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2727
EcoT14I	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2445, 3008, 3051, 3239
EcoT22I	ATGCAT	1 cut(s)	759
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2445, 3008, 3051, 3239
Esp3I	CGTCTC	1 cut(s)	2001
FalI	AAGNNNNNCTT	2 cut(s)	2532, 2564
FaqI	GGGAC	8 cut(s)	151, 588, 1052, 1104, 1600, 1621, 2220, 3268
FauI	CCCGC	3 cut(s)	464, 1626, 2617
FauNDI	CATATG	2 cut(s)	2202, 2755
FbaI	TGATCA	1 cut(s)	1828
FblI	GTMKAC	2 cut(s)	1594, 3057
FokI	GGATG	9 cut(s)	212, 618, 680, 1294, 1507, 2052, 2124, 2557, 3326
GlaI	GCGC	4 cut(s)	34, 106, 911, 1410
GsuI	CTGGAG	2 cut(s)	1943, 1949
HaeII	RGCGCY	2 cut(s)	36, 1412
HaeIII	GGCC	9 cut(s)	101, 112, 134, 165, 773, 1147, 2014, 2379, 2628
HgaI	GACGC	2 cut(s)	353, 1983
HhaI	GCGC	4 cut(s)	35, 107, 912, 1411
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	4 cut(s)	33, 105, 910, 1409
HinP1I	GCGC	4 cut(s)	33, 105, 910, 1409
HincII	GTYRAC	3 cut(s)	1047, 2295, 2673
HindII	GTYRAC	3 cut(s)	1047, 2295, 2673
HindIII	AAGCTT	4 cut(s)	1267, 1892, 2156, 3351
HinfI	GANTC	7 cut(s)	938, 1043, 1175, 1816, 2530, 2969, 3277
HpaI	GTTAAC	1 cut(s)	2295
HphI	GGTGA	6 cut(s)	130, 259, 656, 1235, 1562, 2316
Hpy99I	CGWCG	1 cut(s)	3141
HpyCH4IV	ACGT	3 cut(s)	144, 700, 3064
HpySE526I	ACGT	3 cut(s)	144, 700, 3064
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	4 cut(s)	33, 105, 910, 1409
KasI	GGCGCC	1 cut(s)	32
KflI	GGGWCCC	1 cut(s)	138
KroI	GCCGGC	2 cut(s)	10, 130
KroNI	GCCGGC	2 cut(s)	12, 132
Ksp22I	TGATCA	1 cut(s)	1828
KspAI	GTTAAC	1 cut(s)	2295
LmnI	GCTCC	8 cut(s)	88, 609, 1108, 1319, 1968, 2276, 2905, 3068
MabI	ACCWGGT	2 cut(s)	1258, 2173
MaeII	ACGT	3 cut(s)	144, 700, 3064
MaeIII	GTNAC	6 cut(s)	265, 746, 1096, 1455, 1845, 2468
MfeI	CAATTG	3 cut(s)	1832, 2777, 2964
MflI	RGATCY	4 cut(s)	361, 1243, 1381, 3080
MhlI	GDGCHC	2 cut(s)	3007, 3016
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	4 cut(s)	947, 1052, 1810, 2963
MmeI	TCCRAC	5 cut(s)	2240, 2369, 2790, 3164, 3208
Mph1103I	ATGCAT	1 cut(s)	759
MroNI	GCCGGC	2 cut(s)	10, 130
MseI	TTAA	6 cut(s)	1200, 1584, 2103, 2294, 2393, 2550
MslI	CAYNNNNRTG	1 cut(s)	3210
MspA1I	CMGCKG	5 cut(s)	115, 776, 2579, 2624, 3034
MunI	CAATTG	3 cut(s)	1832, 2777, 2964
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	8 cut(s)	529, 1158, 1250, 1260, 1570, 1967, 2175, 2729
NaeI	GCCGGC	2 cut(s)	12, 132
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	5 cut(s)	86, 109, 136, 2197, 2290
NcoI	CCATGG	2 cut(s)	1524, 3008
NdeI	CATATG	2 cut(s)	2202, 2755
NgoMIV	GCCGGC	2 cut(s)	10, 130
NheI	GCTAGC	1 cut(s)	1310
NlaIV	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2307, 2378, 3015
NmeAIII	GCCGAG	1 cut(s)	1369
NmuCI	GTSAC	2 cut(s)	265, 746
NsiI	ATGCAT	1 cut(s)	759
NspI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2869
PaeI	GCATGC	3 cut(s)	278, 910, 2869
PagI	TCATGA	1 cut(s)	3205
PaqCI	CACCTGC	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PctI	GAATGC	1 cut(s)	1167
PdiI	GCCGGC	2 cut(s)	12, 132
PfeI	GAWTC	3 cut(s)	1175, 2530, 3277
PflMI	CCANNNNNTGG	1 cut(s)	2465
PfoI	TCCNGGA	1 cut(s)	1965
PleI	GAGTC	4 cut(s)	946, 1051, 1810, 2963
PluTI	GGCGCC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	4 cut(s)	946, 1051, 1810, 2963
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	2432
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2727
PspCI	CACGTG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	1455
PspGI	CCWGG	8 cut(s)	527, 1156, 1248, 1258, 1568, 1965, 2173, 2727
PspN4I	GGNNCC	9 cut(s)	34, 139, 140, 282, 611, 1245, 2307, 2378, 3015
PspPI	GGNCC	9 cut(s)	110, 138, 280, 552, 1969, 2013, 2377, 2626, 3166
PspPPI	RGGWCCY	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	1933, 3037
PsuI	RGATCY	4 cut(s)	361, 1243, 1381, 3080
PvuII	CAGCTG	1 cut(s)	2579
RsaI	GTAC	8 cut(s)	152, 327, 703, 869, 956, 964, 1530, 1566
RsaNI	GTAC	8 cut(s)	151, 326, 702, 868, 955, 963, 1529, 1565
RseI	CAYNNNNRTG	1 cut(s)	3210
SaqAI	TTAA	6 cut(s)	1200, 1584, 2103, 2294, 2393, 2550
Sau96I	GGNCC	9 cut(s)	110, 138, 280, 552, 1969, 2013, 2377, 2626, 3166
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	4 cut(s)	947, 1052, 1810, 2963
SduI	GDGCHC	2 cut(s)	3007, 3016
SexAI	ACCWGGT	2 cut(s)	1258, 2173
SfcI	CTRYAG	3 cut(s)	777, 1436, 3084
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	5 cut(s)	138, 280, 552, 1969, 3166
SmiMI	CAYNNNNRTG	1 cut(s)	3210
SmlI	CTYRAG	4 cut(s)	159, 513, 2437, 2791
SmoI	CTYRAG	4 cut(s)	159, 513, 2437, 2791
SpeI	ACTAGT	1 cut(s)	3190
SphI	GCATGC	3 cut(s)	278, 910, 2869
SseBI	AGGCCT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	2110
StuI	AGGCCT	1 cut(s)	101
StyI	CCWWGG	8 cut(s)	827, 1148, 1214, 1524, 2445, 3008, 3051, 3239
TaiI	ACGT	3 cut(s)	147, 703, 3067
TaqI	TCGA	3 cut(s)	1139, 2383, 2733
TaqII	GACCGA	1 cut(s)	3183
TatI	WGTACW	2 cut(s)	150, 867
TauI	GCSGC	8 cut(s)	38, 41, 115, 130, 776, 1147, 2149, 3037
TfiI	GAWTC	3 cut(s)	1175, 2530, 3277
Tru1I	TTAA	6 cut(s)	1200, 1584, 2103, 2294, 2393, 2550
Tru9I	TTAA	6 cut(s)	1200, 1584, 2103, 2294, 2393, 2550
TscAI	CASTG	8 cut(s)	427, 985, 1283, 1510, 1938, 2520, 3007, 3342
TseFI	GTSAC	2 cut(s)	265, 746
Tsp45I	GTSAC	2 cut(s)	265, 746
TspGWI	ACGGA	2 cut(s)	305, 548
TspRI	CASTG	8 cut(s)	427, 985, 1283, 1510, 1938, 2520, 3007, 3342
Van91I	CCANNNNNTGG	1 cut(s)	2465
VpaK11BI	GGWCC	5 cut(s)	138, 280, 552, 1969, 3166
XapI	RAATTY	6 cut(s)	213, 845, 1297, 1576, 1804, 2884
XbaI	TCTAGA	2 cut(s)	1186, 2240
XceI	RCATGY	5 cut(s)	278, 502, 910, 1291, 2869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1256, 1576
XmaJI	CCTAGG	2 cut(s)	827, 1148
XmiI	GTMKAC	2 cut(s)	1594, 3057
ZrmI	AGTACT	1 cut(s)	869
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.