FvH4_4g06450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012168
Physical Location & Seq
Forward (+)
5750613 .. 5752007
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06450.t1

Sequence Viewer

Length: 705 bp
ATGGCAGGCTACTTCGTCTCCGAGCCAATGCAAAGAAACATGACCACCCGGAAGAGGAAGGAGCTGGGCCAGCTCGATCAAGTCAACGATGACTTGTCCGACTTCTCTCTTTCCTCTCCGGCCAGAAAGATTCGCCGTCTGGATGCGCAATTACCGCCCATTTTGGAGGAAGACGAGGTTGAATTCGACCCGGCTCAGAATTATGGTCCAATGATTGAGGAGCTTGAAAATCAAGAAAGGGCTATTGTGCTATTCAACCCTGTAAATAACCCAATGCTCTATAACCCTTCTAATGTCTCTATCTCTCTTAGTCCTGACCTTGTTTCTGGATTCAAGGACCAATTTGTTCGCTCCAGCTATCAGTATGGCATGAAATGTGACAAGAGTGAGGAAGAGCAAGACAGTAGGAACCAATGTACAGCGGTTGTTCCGTGGGTGCCATCTCAGCTCCCACCTATGCCAGCTACTGAGGTTTCGCAATCCAATGATCGAGGAGAGCCCATGGAGGATGAGGAGATGGGCGCAGCGGCAATGGAGGTCGAAGATAGTAGTACACCAGCAGCAGGAGCAGGAGGAACAAGCAATGGATATAATGGAGGGATTTGGGGGAGTAATAGTGAAGGGTTTCAGCAGTGGCAACAACAACACTGTATGACACCACAACCTCCACAGAACACATCAACACCCATCACTTGGTTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.15

Weight (kDa)

4.32

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 693
AciI CCGC 3 cut(s) 155, 422, 527
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 2 cut(s) 418, 553
AfiI CCNNNNNNNGG 3 cut(s) 54, 563, 693
AgsI TTSAA 4 cut(s) 182, 227, 256, 334
AluBI AGCT 6 cut(s) 64, 73, 223, 357, 448, 464
AluI AGCT 6 cut(s) 64, 73, 223, 357, 448, 464
Alw26I GTCTC 2 cut(s) 22, 301
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 2 cut(s) 67, 120
ApeKI GCWGC 2 cut(s) 524, 560
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 2 cut(s) 148, 524
AspS9I GGNCC 3 cut(s) 67, 206, 337
AsuC2I CCSGG 2 cut(s) 49, 191
AvaII GGWCC 2 cut(s) 206, 337
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 536, 572
BccI CCATC 3 cut(s) 448, 511, 695
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 49, 191
BcoDI GTCTC 2 cut(s) 22, 301
BisI GCNGC 3 cut(s) 525, 528, 561
BlsI GCNGC 3 cut(s) 526, 529, 562
Bme1390I CCNGG 2 cut(s) 49, 191
Bme18I GGWCC 2 cut(s) 206, 337
BmgT120I GGNCC 3 cut(s) 67, 206, 337
BmiI GGNNCC 2 cut(s) 410, 438
BmrFI CCNGG 2 cut(s) 49, 191
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 337
BpuMI CCSGG 2 cut(s) 49, 191
BsaJI CCNNGG 2 cut(s) 431, 501
BsaXI ACNNNNNCTCC 3 cut(s) 32, 601, 631
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 563, 693
Bse3DI GCAATG 2 cut(s) 537, 589
BseDI CCNNGG 2 cut(s) 431, 501
BseGI GGATG 2 cut(s) 148, 514
BseLI CCNNNNNNNGG 3 cut(s) 54, 563, 693
BseMI GCAATG 2 cut(s) 537, 589
BseMII CTCAG 3 cut(s) 209, 458, 459
BseRI GAGGAG 3 cut(s) 233, 507, 527
BseXI GCAGC 2 cut(s) 536, 572
BseYI CCCAGC 1 cut(s) 64
BshFI GGCC 2 cut(s) 69, 122
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 3 cut(s) 49, 119, 191
BslI CCNNNNNNNGG 3 cut(s) 54, 563, 693
BsmAI GTCTC 2 cut(s) 22, 301
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 69, 122
Bsp1286I GDGCHC 1 cut(s) 501
Bsp1407I TGTACA 1 cut(s) 416
Bsp143I GATC 2 cut(s) 76, 487
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 3 cut(s) 155, 422, 527
BspANI GGCC 2 cut(s) 69, 122
BspCNI CTCAG 3 cut(s) 208, 457, 460
BspLI GGNNCC 2 cut(s) 410, 438
BspQI GCTCTTC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 537, 589
BsrGI TGTACA 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 431, 501
BssMI GATC 2 cut(s) 76, 487
BssT1I CCWWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 404, 650
Bst6I CTCTTC 2 cut(s) 47, 387
BstAUI TGTACA 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 7, 71, 462
BstDEI CTNAG 4 cut(s) 195, 308, 444, 468
BstDSI CCRYGG 2 cut(s) 431, 501
BstF5I GGATG 2 cut(s) 148, 514
BstHHI GCGC 2 cut(s) 148, 524
BstKTI GATC 2 cut(s) 79, 490
BstMAI GTCTC 2 cut(s) 22, 301
BstMBI GATC 2 cut(s) 76, 487
BstMWI GCNNNNNNNGC 4 cut(s) 70, 154, 445, 566
BstSCI CCNGG 2 cut(s) 47, 189
BstV1I GCAGC 2 cut(s) 536, 572
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 69, 122
BtgI CCRYGG 2 cut(s) 431, 501
BtsCI GGATG 2 cut(s) 148, 514
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 638, 646
Cac8I GCNNGC 3 cut(s) 7, 71, 462
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 2 cut(s) 148, 524
Cfr13I GGNCC 3 cut(s) 67, 206, 337
Csp6I GTAC 2 cut(s) 417, 552
CviAII CATG 3 cut(s) 40, 370, 502
CviQI GTAC 2 cut(s) 417, 552
DdeI CTNAG 4 cut(s) 195, 308, 444, 468
DpnI GATC 2 cut(s) 78, 489
DpnII GATC 2 cut(s) 76, 487
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 47, 387
EarI CTCTTC 2 cut(s) 47, 387
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 206, 337
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 3 cut(s) 43, 373, 505
FaiI YATR 9 cut(s) 41, 204, 282, 366, 371, 458, 503, 591, 653
FatI CATG 3 cut(s) 39, 369, 501
Fnu4HI GCNGC 3 cut(s) 525, 528, 561
FokI GGATG 2 cut(s) 155, 521
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 525, 528, 561
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 2 cut(s) 147, 523
GluI GCNGC 3 cut(s) 525, 528, 561
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 2 cut(s) 69, 122
HapII CCGG 3 cut(s) 49, 119, 191
HhaI GCGC 2 cut(s) 148, 524
Hin1II CATG 3 cut(s) 43, 373, 505
Hin6I GCGC 2 cut(s) 146, 522
HinP1I GCGC 2 cut(s) 146, 522
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 130, 330
HpaII CCGG 3 cut(s) 49, 119, 191
Hpy166II GTNNAC 2 cut(s) 85, 554
Hpy188I TCNGA 3 cut(s) 22, 100, 198
Hpy188III TCNNGA 4 cut(s) 140, 233, 314, 327
Hpy8I GTNNAC 2 cut(s) 85, 554
HpyAV CCTTC 3 cut(s) 52, 297, 614
HpyCH4III ACNGT 2 cut(s) 404, 650
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 154, 445, 566
HpyF3I CTNAG 4 cut(s) 195, 308, 444, 468
Hsp92II CATG 3 cut(s) 43, 373, 505
HspAI GCGC 2 cut(s) 146, 522
Kzo9I GATC 2 cut(s) 76, 487
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 5 cut(s) 61, 220, 356, 453, 566
Lsp1109I GCAGC 2 cut(s) 536, 572
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 377
MalI GATC 2 cut(s) 78, 489
MboI GATC 2 cut(s) 76, 487
MboII GAAGA 4 cut(s) 64, 182, 404, 554
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 4 cut(s) 149, 182, 199, 341
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 422, 527
MspI CCGG 3 cut(s) 49, 119, 191
MspR9I CCNGG 2 cut(s) 49, 191
MwoI GCNNNNNNNGC 4 cut(s) 70, 154, 445, 566
NciI CCSGG 2 cut(s) 49, 191
NcoI CCATGG 1 cut(s) 501
NdeII GATC 2 cut(s) 76, 487
NlaIII CATG 3 cut(s) 43, 373, 505
NlaIV GGNNCC 2 cut(s) 410, 438
NmuCI GTSAC 1 cut(s) 377
NsbI TGCGCA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 130, 330
PflMI CCANNNNNTGG 1 cut(s) 693
PkrI GCNGC 3 cut(s) 526, 529, 562
PspFI CCCAGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 410, 438
PspPI GGNCC 3 cut(s) 67, 206, 337
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 418, 553
RsaNI GTAC 2 cut(s) 417, 552
SapI GCTCTTC 1 cut(s) 387
SatI GCNGC 3 cut(s) 525, 528, 561
Sau3AI GATC 2 cut(s) 76, 487
Sau96I GGNCC 3 cut(s) 67, 206, 337
ScrFI CCNGG 2 cut(s) 49, 191
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 2 cut(s) 206, 337
Sse9I AATT 4 cut(s) 149, 182, 199, 341
SsiI CCGC 3 cut(s) 155, 422, 527
StyD4I CCNGG 2 cut(s) 47, 189
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 404, 650
TaqI TCGA 5 cut(s) 75, 186, 490, 540, 700
TasI AATT 4 cut(s) 149, 182, 199, 341
TatI WGTACW 2 cut(s) 416, 551
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 130, 330
TscAI CASTG 2 cut(s) 638, 653
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 524, 560
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 2 cut(s) 638, 653
Van91I CCANNNNNTGG 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 206, 337
XapI RAATTY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.