Rroxscaffold_5G00343220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012168
Physical Location & Seq
Forward (+)
12524604 .. 12525750
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343220.1

Sequence Viewer

Length: 708 bp
ATGGCAGGCTACTTCGTCTCCGAAGCAATGCAAAGGAACATGACCCCCAAGAAGCGTAAGGGAGTGGGGCAGCTCGACCAAGTCAACGACCACTTCTCCGACTTCTCCCTCTCTTCTCCGGCCAGAAAGATTCGCCGTCTGGATGCGCAATTACCACCCATTTTGGAGGAAGAGGAGGTTGAATTCGACCCGGGTCAGATGAACTGTAATGGTCTAGTGATTGAGGAGCTCGAAAGTCAAGAAAGGGCCATTGTGCCCTTCAACCCTGTAAATAACCCAATTCTCCATAACCCTTCTAATGTCTCTGTCTCTCTTAGTCCTGACTTAATCTCTGGATTCAAGGACCAATTTGTTCGGTCCAGCTATCATTATGGCATGAAATCCGACAAGAGTGAGGAGGATGAGCAAGTGAACAAGGACCAATGTAAAGCGGTTGTTCCGTGGGTGCCATCTCAGCAGCTCCCACCTATGCCAGCTGTGGAGGTTTCGCAATCCGAGGATGGAGGAGAGGCAATGGAGGATGAGGAGATGGGCGTAGCGGCAATGGAGATCGAAGAGAGCAGCACATCAGTAGCAGGAACAGGAGCAGGAGCACAAGGAACAAGCAATGGCTATGGTGGAGGGATTTGGGCGCAGTGGCAGCAACAGCACTGTATGATACCACAGCCTCCACAGAACACATCTACACCTATCACATGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

4.47

Isoelectric Point (pI)

65.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 445
AciI CCGC 2 cut(s) 431, 539
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 182
AgsI TTSAA 4 cut(s) 182, 262, 340, 704
AluBI AGCT 5 cut(s) 73, 229, 363, 460, 476
AluI AGCT 5 cut(s) 73, 229, 363, 460, 476
Alw21I GWGCWC 2 cut(s) 231, 595
Alw26I GTCTC 3 cut(s) 22, 307, 313
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 120, 246
ApeKI GCWGC 4 cut(s) 70, 457, 561, 640
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 2 cut(s) 148, 634
AspS9I GGNCC 4 cut(s) 246, 343, 357, 418
AsuC2I CCSGG 2 cut(s) 191, 192
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 3 cut(s) 343, 357, 418
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 595
BbvI GCAGC 4 cut(s) 82, 469, 573, 652
BccI CCATC 3 cut(s) 457, 494, 523
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 3 cut(s) 22, 307, 313
BfaI CTAG 1 cut(s) 215
BisI GCNGC 5 cut(s) 71, 458, 540, 562, 641
BlsI GCNGC 5 cut(s) 72, 459, 541, 563, 642
Bme1390I CCNGG 2 cut(s) 191, 192
Bme18I GGWCC 3 cut(s) 343, 357, 418
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 4 cut(s) 246, 343, 357, 418
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 191, 192
BmsI GCATC 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 191, 192
BsaJI CCNNGG 3 cut(s) 190, 440, 495
BsaXI ACNNNNNCTCC 3 cut(s) 32, 80, 110
Bse3DI GCAATG 4 cut(s) 33, 519, 549, 613
BseDI CCNNGG 3 cut(s) 190, 440, 495
BseGI GGATG 4 cut(s) 148, 406, 505, 526
BseMI GCAATG 4 cut(s) 33, 519, 549, 613
BseMII CTCAG 1 cut(s) 467
BseRI GAGGAG 5 cut(s) 188, 239, 410, 519, 539
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 4 cut(s) 82, 469, 573, 652
BshFI GGCC 2 cut(s) 122, 248
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 2 cut(s) 231, 595
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 119, 191
BsmAI GTCTC 3 cut(s) 22, 307, 313
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 122, 248
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 231, 258, 595
Bsp143I GATC 1 cut(s) 549
BspACI CCGC 2 cut(s) 431, 539
BspANI GGCC 2 cut(s) 122, 248
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 4 cut(s) 33, 519, 549, 613
BssECI CCNNGG 3 cut(s) 190, 440, 495
BssMI GATC 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 206, 653
Bst6I CTCTTC 3 cut(s) 118, 165, 549
BstC8I GCNNGC 2 cut(s) 7, 474
BstDEI CTNAG 2 cut(s) 314, 453
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 4 cut(s) 148, 406, 505, 526
BstHHI GCGC 2 cut(s) 148, 634
BstKTI GATC 1 cut(s) 552
BstMAI GTCTC 3 cut(s) 22, 307, 313
BstMBI GATC 1 cut(s) 549
BstMWI GCNNNNNNNGC 3 cut(s) 454, 640, 646
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 189, 190
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 82, 469, 573, 652
BsuRI GGCC 2 cut(s) 122, 248
BtgI CCRYGG 1 cut(s) 440
BtsCI GGATG 4 cut(s) 148, 406, 505, 526
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 641, 649
Cac8I GCNNGC 2 cut(s) 7, 474
CfoI GCGC 2 cut(s) 148, 634
Cfr13I GGNCC 4 cut(s) 246, 343, 357, 418
Cfr9I CCCGGG 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 40, 376, 696
DdeI CTNAG 2 cut(s) 314, 453
DpnI GATC 1 cut(s) 551
DpnII GATC 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 118, 165, 549
EarI CTCTTC 3 cut(s) 118, 165, 549
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 343, 357, 418
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 3 cut(s) 43, 379, 699
FaiI YATR 8 cut(s) 41, 288, 372, 377, 470, 615, 656, 697
FatI CATG 3 cut(s) 39, 375, 695
Fnu4HI GCNGC 5 cut(s) 71, 458, 540, 562, 641
FokI GGATG 4 cut(s) 155, 413, 512, 533
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 71, 458, 540, 562, 641
FspBI CTAG 1 cut(s) 215
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 2 cut(s) 147, 633
GluI GCNGC 5 cut(s) 71, 458, 540, 562, 641
HaeIII GGCC 2 cut(s) 122, 248
HapII CCGG 2 cut(s) 119, 191
HhaI GCGC 2 cut(s) 148, 634
Hin1II CATG 3 cut(s) 43, 379, 699
Hin6I GCGC 2 cut(s) 146, 632
HinP1I GCGC 2 cut(s) 146, 632
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 130, 336
HpaII CCGG 2 cut(s) 119, 191
Hpy166II GTNNAC 2 cut(s) 85, 412
Hpy188I TCNGA 5 cut(s) 22, 100, 198, 385, 496
Hpy188III TCNNGA 4 cut(s) 140, 239, 320, 333
Hpy8I GTNNAC 2 cut(s) 85, 412
HpyAV CCTTC 2 cut(s) 268, 303
HpyCH4III ACNGT 2 cut(s) 206, 653
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 640, 646
HpyF3I CTNAG 2 cut(s) 314, 453
Hsp92II CATG 3 cut(s) 43, 379, 699
HspAI GCGC 2 cut(s) 146, 632
Kzo9I GATC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 226, 465, 584, 590
Lsp1109I GCAGC 4 cut(s) 82, 469, 573, 652
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 551
MboI GATC 1 cut(s) 549
MboII GAAGA 3 cut(s) 105, 182, 566
MhlI GDGCHC 3 cut(s) 231, 258, 595
MluCI AATT 4 cut(s) 149, 182, 279, 347
MmeI TCCRAC 2 cut(s) 123, 408
MseI TTAA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 119, 191
MspR9I CCNGG 2 cut(s) 191, 192
MwoI GCNNNNNNNGC 3 cut(s) 454, 640, 646
NciI CCSGG 2 cut(s) 191, 192
NdeII GATC 1 cut(s) 549
NlaIII CATG 3 cut(s) 43, 379, 699
NlaIV GGNNCC 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 147
PfeI GAWTC 2 cut(s) 130, 336
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 5 cut(s) 72, 459, 541, 563, 642
PshAI GACNNNNGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 4 cut(s) 246, 343, 357, 418
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 5 cut(s) 71, 458, 540, 562, 641
Sau3AI GATC 1 cut(s) 549
Sau96I GGNCC 4 cut(s) 246, 343, 357, 418
ScrFI CCNGG 2 cut(s) 191, 192
SduI GDGCHC 3 cut(s) 231, 258, 595
SetI ASST 9 cut(s) 75, 180, 231, 365, 462, 469, 478, 486, 691
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 3 cut(s) 343, 357, 418
SmaI CCCGGG 1 cut(s) 192
Sse9I AATT 4 cut(s) 149, 182, 279, 347
SsiI CCGC 2 cut(s) 431, 539
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 189, 190
TaaI ACNGT 2 cut(s) 206, 653
TaqI TCGA 4 cut(s) 75, 186, 231, 552
TaqII GACCGA 1 cut(s) 345
TasI AATT 4 cut(s) 149, 182, 279, 347
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 130, 336
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 2 cut(s) 641, 656
TseI GCWGC 4 cut(s) 70, 457, 561, 640
TspDTI ATGAA 2 cut(s) 215, 392
TspGWI ACGGA 1 cut(s) 429
TspMI CCCGGG 1 cut(s) 190
TspRI CASTG 2 cut(s) 641, 656
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 343, 357, 418
XapI RAATTY 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 190
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.