Rmu_sc0004094.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0012168
Physical Location & Seq
Forward (+)
36196 .. 36688
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004094.1_g000005.1.cds

Sequence Viewer

Length: 411 bp
atgtcaggctacttcgtctccgaagcaatgcaaaggaacatgaccaccaagaagcgtaaggaagtggggcagctcgaccaagtcaacgatcacttctccgacttctccctctgttctccggccagaaagattcgccgtctggatgcgcaattaccacccatcttggaggaagaggaggttgaattcgacccgggtcagatgaactgtaatggtctagtgactgaggagctcgaaaatcaagaaagggccattgtgcccttcaaccctgtaaataacccaattctccataacccttctaatgtctctgtctctcttagtcctgacttaatctctggattcaagggtaagtgctcaaacccaaatacccttttggattttcttatgattttttgggtgtttgtgagaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

5.17

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 182
AgsI TTSAA 3 cut(s) 182, 262, 340
AluBI AGCT 2 cut(s) 73, 229
AluI AGCT 2 cut(s) 73, 229
Alw21I GWGCWC 2 cut(s) 231, 353
Alw26I GTCTC 3 cut(s) 22, 307, 313
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 120, 246
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 2 cut(s) 191, 192
AvaI CYCGRG 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 353
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 3 cut(s) 22, 307, 313
BfaI CTAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 191, 192
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 191, 192
BmsI GCATC 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 191, 192
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 188, 239
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 122, 248
BsiHKAI GWGCWC 2 cut(s) 231, 353
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 119, 191
BsmAI GTCTC 3 cut(s) 22, 307, 313
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 122, 248
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 231, 258, 353
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 2 cut(s) 122, 248
BspCNI CTCAG 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 222, 314
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 3 cut(s) 22, 307, 313
BstMBI GATC 1 cut(s) 88
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 189, 190
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 122, 248
BtsCI GGATG 1 cut(s) 148
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 246
Cfr9I CCCGGG 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 1 cut(s) 40
CviJI RGCY 5 cut(s) 9, 73, 122, 229, 248
CviKI_1 RGCY 5 cut(s) 9, 73, 122, 229, 248
DdeI CTNAG 2 cut(s) 222, 314
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 288, 383
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 215
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 122, 248
HapII CCGG 2 cut(s) 119, 191
HhaI GCGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 130, 336
HpaII CCGG 2 cut(s) 119, 191
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 22, 100, 198
Hpy188III TCNNGA 4 cut(s) 140, 239, 320, 333
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 268, 303
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 222, 314
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 125, 132, 136, 204, 279, 318, 333
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 3 cut(s) 231, 258, 353
MluCI AATT 3 cut(s) 149, 182, 279
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 119, 160, 166, 169, 217
MseI TTAA 1 cut(s) 326
MspI CCGG 2 cut(s) 119, 191
MspR9I CCNGG 2 cut(s) 191, 192
NciI CCSGG 2 cut(s) 191, 192
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 147
PfeI GAWTC 2 cut(s) 130, 336
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 246
PsyI GACNNNGTC 1 cut(s) 80
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 191, 192
SduI GDGCHC 3 cut(s) 231, 258, 353
SetI ASST 3 cut(s) 75, 180, 231
SfaNI GCATC 1 cut(s) 133
SmaI CCCGGG 1 cut(s) 192
Sse9I AATT 3 cut(s) 149, 182, 279
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 189, 190
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 75, 186, 231
TasI AATT 3 cut(s) 149, 182, 279
TfiI GAWTC 2 cut(s) 130, 336
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 215
TspMI CCCGGG 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 80
XapI RAATTY 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 190
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.