Prupe.1G067800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012168
Physical Location & Seq
Forward (+)
4853134 .. 4854537
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G067800.1

Sequence Viewer

Length: 705 bp
ATGGAAGACCACTTTGTCTCAGAAGGAATGCAGATGAAGACGATGAAGAAGAAGAGGAAGGAGGTGGAGGAGCTTGACCAAGTCAACGATGACTTCTCCGACTTCTCTCTTTCTTCCCCTGCCAGAAAGATTCGCCGCCTGGATGCTCATCTGCCACCCATTATGGAGGAAGAGGAGGCTGAGTTTTCATTTTCAGCTGCTCAGAATCAGCTGAAATCAGAGGCTCCAATTATTGAGGGATTGCCCTCAGAAAACCAAGAAAAGGCCATTGTGCTCTTCAGGCCTGTCAACAATACCCCAGTCTTCTCTCTCCATTCTGACTTAATTTCTGGCTTTAAGGACCAATTTCTGCGGTCCAGCCATTTTGGTCTGAGATCATCAGCTGAGGAAGATGATGAGGCAGTGCAAAGCAACAGCAATCAGTGTAAAGCTGTTGTTCCTTGGGTTCCCAGTCATCTATCTCCTGCACCATCAATGGGGGTTTCACAAGCAGACCCTCCAGAGGAGCTGATGGAGGCTGAGGGTATGGAAACAGCAACAATGGAGATTGAAGAAGAGAGCCCAGCAGCAGGGCAAGCCATGGCAGATGGGTATGGTGGTGGGATGTGGACAAGTAATGAAGGCTTTCCTCAGTGGCAGCAACAGCATTGTATGATTCCACAGCCTCCACACAACACAACCACAGCCATCACATGGCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.08

Weight (kDa)

4.53

Isoelectric Point (pI)

67.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 693
AciI CCGC 2 cut(s) 136, 352
AcuI CTGAAG 1 cut(s) 262
AfiI CCNNNNNNNGG 5 cut(s) 262, 476, 502, 569, 693
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 6 cut(s) 73, 197, 211, 383, 431, 508
AluI AGCT 6 cut(s) 73, 197, 211, 383, 431, 508
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 264, 281
ApeKI GCWGC 4 cut(s) 197, 566, 637, 697
Asp700I GAANNNNTTC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 340, 354
AvaII GGWCC 2 cut(s) 340, 354
BanII GRGCYC 1 cut(s) 563
BbsI GAAGAC 3 cut(s) 12, 44, 295
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 2 cut(s) 384, 519
BbvI GCAGC 4 cut(s) 184, 578, 649, 684
BccI CCATC 4 cut(s) 478, 505, 581, 695
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 22
BisI GCNGC 5 cut(s) 136, 198, 567, 638, 698
BlsI GCNGC 5 cut(s) 137, 199, 568, 639, 699
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 340, 354
BmgT120I GGNCC 2 cut(s) 340, 354
BmiI GGNNCC 2 cut(s) 225, 447
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 2 cut(s) 293, 444
BmsI GCATC 1 cut(s) 133
BmuI ACTGGG 2 cut(s) 293, 444
BpiI GAAGAC 3 cut(s) 12, 44, 295
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 2 cut(s) 384, 519
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 440, 579
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 476, 502, 569, 693
Bse1I ACTGG 2 cut(s) 299, 450
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 440, 579
BseGI GGATG 2 cut(s) 148, 609
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 5 cut(s) 262, 476, 502, 569, 693
BseMII CTCAG 8 cut(s) 33, 171, 215, 261, 362, 375, 510, 644
BseNI ACTGG 2 cut(s) 299, 450
BseRI GAGGAG 3 cut(s) 83, 188, 518
BseXI GCAGC 4 cut(s) 184, 578, 649, 684
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 2 cut(s) 266, 283
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 5 cut(s) 262, 476, 502, 569, 693
BsmAI GTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 2 cut(s) 266, 283
Bsp1286I GDGCHC 2 cut(s) 276, 563
Bsp143I GATC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 2 cut(s) 136, 352
BspANI GGCC 2 cut(s) 266, 283
BspCNI CTCAG 8 cut(s) 32, 172, 214, 260, 363, 376, 511, 643
BspLI GGNNCC 2 cut(s) 225, 447
BspQI GCTCTTC 1 cut(s) 281
BsrI ACTGG 2 cut(s) 299, 450
BssECI CCNNGG 2 cut(s) 440, 579
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 2 cut(s) 440, 579
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 4 cut(s) 47, 165, 281, 549
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 8 cut(s) 19, 180, 201, 247, 371, 384, 519, 630
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 2 cut(s) 148, 609
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 3 cut(s) 280, 575, 643
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 184, 578, 649, 684
BstV2I GAAGAC 3 cut(s) 12, 44, 295
BsuRI GGCC 2 cut(s) 266, 283
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 2 cut(s) 148, 609
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 408, 428, 638
Cac8I GCNNGC 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 340, 354
CviAII CATG 2 cut(s) 580, 693
DdeI CTNAG 8 cut(s) 19, 180, 201, 247, 371, 384, 519, 630
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 4 cut(s) 47, 165, 281, 549
EarI CTCTTC 4 cut(s) 47, 165, 281, 549
Eco130I CCWWGG 2 cut(s) 440, 579
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 563
Eco47I GGWCC 2 cut(s) 340, 354
Eco57I CTGAAG 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 2 cut(s) 440, 579
EcoT38I GRGCYC 1 cut(s) 563
ErhI CCWWGG 2 cut(s) 440, 579
FaeI CATG 2 cut(s) 583, 696
FaiI YATR 6 cut(s) 164, 527, 581, 594, 653, 694
FatI CATG 2 cut(s) 579, 692
Fnu4HI GCNGC 5 cut(s) 136, 198, 567, 638, 698
FokI GGATG 2 cut(s) 155, 616
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 5 cut(s) 136, 198, 567, 638, 698
GluI GCNGC 5 cut(s) 136, 198, 567, 638, 698
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 2 cut(s) 266, 283
Hin1II CATG 2 cut(s) 583, 696
HincII GTYRAC 2 cut(s) 85, 289
HindII GTYRAC 2 cut(s) 85, 289
HinfI GANTC 3 cut(s) 130, 205, 655
Hpy166II GTNNAC 3 cut(s) 85, 289, 609
Hpy188I TCNGA 7 cut(s) 22, 100, 204, 220, 250, 319, 372
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 3 cut(s) 85, 289, 609
HpyAV CCTTC 3 cut(s) 17, 52, 614
HpyCH4V TGCA 4 cut(s) 31, 406, 467, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 575, 643
HpyF3I CTNAG 8 cut(s) 19, 180, 201, 247, 371, 384, 519, 630
Hsp92II CATG 2 cut(s) 583, 696
Kzo9I GATC 1 cut(s) 374
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 3 cut(s) 70, 229, 505
Lsp1109I GCAGC 4 cut(s) 184, 578, 649, 684
LweI GCATC 1 cut(s) 133
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 276, 563
MluCI AATT 3 cut(s) 228, 324, 344
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 2 cut(s) 323, 336
MspA1I CMGCKG 3 cut(s) 197, 211, 383
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 280, 575, 643
NcoI CCATGG 1 cut(s) 579
NdeII GATC 1 cut(s) 374
NlaIII CATG 2 cut(s) 583, 696
NlaIV GGNNCC 2 cut(s) 225, 447
PceI AGGCCT 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 281
PctI GAATGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 130, 205, 655
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 693
PkrI GCNGC 5 cut(s) 137, 199, 568, 639, 699
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 225, 447
PspPI GGNCC 2 cut(s) 340, 354
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 3 cut(s) 197, 211, 383
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 323, 336
SatI GCNGC 5 cut(s) 136, 198, 567, 638, 698
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 2 cut(s) 340, 354
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 276, 563
SetI ASST 7 cut(s) 66, 75, 199, 213, 385, 433, 510
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 2 cut(s) 340, 354
Sse9I AATT 3 cut(s) 228, 324, 344
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 2 cut(s) 136, 352
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 440, 579
TasI AATT 3 cut(s) 228, 324, 344
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 130, 205, 655
Tru1I TTAA 2 cut(s) 323, 336
Tru9I TTAA 2 cut(s) 323, 336
TscAI CASTG 3 cut(s) 408, 428, 638
TseI GCWGC 4 cut(s) 197, 566, 637, 697
TspDTI ATGAA 4 cut(s) 50, 59, 177, 633
TspRI CASTG 3 cut(s) 408, 428, 638
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 340, 354
XmnI GAANNNNTTC 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.