RLG00000009375

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012168
Physical Location & Seq
Reverse (-)
51831153 .. 51832043
891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009375

Sequence Viewer

Length: 699 bp
ATGTCAGGCTACTTCGTCTCCGAAGCAGTGCAAAGGAACATGACCACCAAGAAGCGTAAGGAAGTGGGGCAGCTCGACCAAGTCAACGACCACTTCTCCGACTTCTCCCTCTCTTCTCCGGCCAGAAAGATTCGCCGTCTGGATGCGCAATTACCACCCATCTTGGAGGAAGAGGAGGTTGAATTCGACCCGGCTCAGATGAACTGTAATGGCCCAGTGATTGAGGAGCCCCAAAATCAAGAAAGGGCCATTGTGCCCTTCAACCCTGTAAATAACCCAATTCTCCATAACCCTTCTAATGTCTCTGTCTCTCTGAGTCCTGACTTATTCTCTGGATTCAAGGACCAATTTGTTCGGTCCAGCTATCGTTATGGCATGAAATCCGACAAAAGTGAGGAGGAAGAGCAAGTGAACAAGGACCAATGTAAAGCGGTAGTTCCGTGGTTGCCATCTCAGCAGCTCCCACCTATGCCAGCTGTGGAGGTTTCCCAATCTGAGGAGGATCGAGGAGAGGCAATGGAGGATGAGGAGATGGGCGCAGCAGCGATGGAGATCGAAGAGAGCAGCACATCAGCAGCAGGAGCACAAGGAACAAGCAATGGCTATGGTGGAGGGATTTGGGCGCAGTGGCAGCAACAGCACTGTATGATACCACAGCCTCCGCATAACACATCTACACCCATCACATGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

4.56

Isoelectric Point (pI)

70.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 687
AciI CCGC 2 cut(s) 431, 662
AclWI GGATC 1 cut(s) 510
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 496, 687
AgsI TTSAA 4 cut(s) 182, 262, 340, 695
AluBI AGCT 4 cut(s) 73, 363, 460, 476
AluI AGCT 4 cut(s) 73, 363, 460, 476
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 3 cut(s) 22, 307, 313
AlwI GGATC 1 cut(s) 510
AoxI GGCC 3 cut(s) 120, 211, 246
ApeKI GCWGC 7 cut(s) 70, 457, 539, 542, 564, 575, 631
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 3 cut(s) 148, 539, 625
AspS9I GGNCC 5 cut(s) 212, 246, 343, 357, 418
AsuC2I CCSGG 1 cut(s) 191
AvaII GGWCC 3 cut(s) 343, 357, 418
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 7 cut(s) 82, 469, 551, 554, 576, 587, 643
BccI CCATC 5 cut(s) 167, 457, 526, 541, 689
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 22, 307, 313
BisI GCNGC 7 cut(s) 71, 458, 540, 543, 565, 576, 632
BlsI GCNGC 7 cut(s) 72, 459, 541, 544, 566, 577, 633
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 343, 357, 418
BmgT120I GGNCC 5 cut(s) 212, 246, 343, 357, 418
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 3 cut(s) 32, 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 687
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 522, 604
Bse8I GATNNNNATC 1 cut(s) 551
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 2 cut(s) 148, 529
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 2 cut(s) 496, 687
BseMI GCAATG 2 cut(s) 522, 604
BseMII CTCAG 4 cut(s) 209, 305, 467, 486
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 6 cut(s) 188, 239, 410, 512, 522, 542
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 7 cut(s) 82, 469, 551, 554, 576, 587, 643
BshFI GGCC 3 cut(s) 122, 213, 248
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 2 cut(s) 119, 191
BslI CCNNNNNNNGG 2 cut(s) 496, 687
BsmAI GTCTC 3 cut(s) 22, 307, 313
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 3 cut(s) 122, 213, 248
Bsp1286I GDGCHC 3 cut(s) 231, 258, 586
Bsp143I GATC 2 cut(s) 502, 552
BspACI CCGC 2 cut(s) 431, 662
BspANI GGCC 3 cut(s) 122, 213, 248
BspCNI CTCAG 4 cut(s) 208, 306, 466, 487
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 522, 604
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 2 cut(s) 502, 552
Bst4CI ACNGT 2 cut(s) 206, 644
Bst6I CTCTTC 4 cut(s) 118, 165, 396, 552
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 195, 314, 453, 495
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 148, 529
BstHHI GCGC 3 cut(s) 148, 539, 625
BstKTI GATC 2 cut(s) 505, 555
BstMAI GTCTC 3 cut(s) 22, 307, 313
BstMBI GATC 2 cut(s) 502, 552
BstMWI GCNNNNNNNGC 4 cut(s) 454, 581, 631, 637
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 7 cut(s) 82, 469, 551, 554, 576, 587, 643
BsuRI GGCC 3 cut(s) 122, 213, 248
BtgI CCRYGG 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 2 cut(s) 148, 529
BtsI GCAGTG 2 cut(s) 33, 632
BtsIMutI CAGTG 4 cut(s) 33, 222, 632, 640
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 3 cut(s) 148, 539, 625
Cfr13I GGNCC 5 cut(s) 212, 246, 343, 357, 418
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 40, 376, 687
DdeI CTNAG 4 cut(s) 195, 314, 453, 495
DpnI GATC 2 cut(s) 504, 554
DpnII GATC 2 cut(s) 502, 552
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 4 cut(s) 118, 165, 396, 552
EarI CTCTTC 4 cut(s) 118, 165, 396, 552
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 343, 357, 418
EcoRI GAATTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 3 cut(s) 43, 379, 690
FaiI YATR 9 cut(s) 41, 288, 372, 377, 470, 606, 647, 666, 688
FatI CATG 3 cut(s) 39, 375, 686
Fnu4HI GCNGC 7 cut(s) 71, 458, 540, 543, 565, 576, 632
FokI GGATG 2 cut(s) 155, 536
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 7 cut(s) 71, 458, 540, 543, 565, 576, 632
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 3 cut(s) 147, 538, 624
GluI GCNGC 7 cut(s) 71, 458, 540, 543, 565, 576, 632
HaeIII GGCC 3 cut(s) 122, 213, 248
HapII CCGG 2 cut(s) 119, 191
HhaI GCGC 3 cut(s) 148, 539, 625
Hin1II CATG 3 cut(s) 43, 379, 690
Hin6I GCGC 3 cut(s) 146, 537, 623
HinP1I GCGC 3 cut(s) 146, 537, 623
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 3 cut(s) 130, 316, 336
HpaII CCGG 2 cut(s) 119, 191
Hpy166II GTNNAC 2 cut(s) 85, 412
Hpy188I TCNGA 6 cut(s) 22, 100, 198, 315, 385, 496
Hpy188III TCNNGA 4 cut(s) 140, 239, 320, 333
Hpy8I GTNNAC 2 cut(s) 85, 412
HpyAV CCTTC 2 cut(s) 268, 303
HpyCH4III ACNGT 2 cut(s) 206, 644
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 581, 631, 637
HpyF3I CTNAG 4 cut(s) 195, 314, 453, 495
Hsp92II CATG 3 cut(s) 43, 379, 690
HspAI GCGC 3 cut(s) 146, 537, 623
Kzo9I GATC 2 cut(s) 502, 552
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 226, 465, 581
Lsp1109I GCAGC 7 cut(s) 82, 469, 551, 554, 576, 587, 643
LweI GCATC 1 cut(s) 133
MalI GATC 2 cut(s) 504, 554
MboI GATC 2 cut(s) 502, 552
MboII GAAGA 4 cut(s) 105, 182, 413, 569
MhlI GDGCHC 3 cut(s) 231, 258, 586
MluCI AATT 4 cut(s) 149, 182, 279, 347
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 123, 408
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 119, 191
MspR9I CCNGG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 454, 581, 631, 637
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 502, 552
NlaIII CATG 3 cut(s) 43, 379, 690
NlaIV GGNNCC 1 cut(s) 228
NsbI TGCGCA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 130, 336
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 687
PkrI GCNGC 7 cut(s) 72, 459, 541, 544, 566, 577, 633
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 5 cut(s) 212, 246, 343, 357, 418
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 396
SatI GCNGC 7 cut(s) 71, 458, 540, 543, 565, 576, 632
Sau3AI GATC 2 cut(s) 502, 552
Sau96I GGNCC 5 cut(s) 212, 246, 343, 357, 418
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 3 cut(s) 231, 258, 586
SetI ASST 7 cut(s) 75, 180, 365, 462, 469, 478, 486
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 3 cut(s) 343, 357, 418
Sse9I AATT 4 cut(s) 149, 182, 279, 347
SsiI CCGC 2 cut(s) 431, 662
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 206, 644
TaqI TCGA 4 cut(s) 75, 186, 505, 555
TaqII GACCGA 1 cut(s) 345
TasI AATT 4 cut(s) 149, 182, 279, 347
TfiI GAWTC 2 cut(s) 130, 336
TscAI CASTG 4 cut(s) 33, 222, 632, 647
TseI GCWGC 7 cut(s) 70, 457, 539, 542, 564, 575, 631
TspDTI ATGAA 2 cut(s) 215, 392
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 4 cut(s) 33, 222, 632, 647
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 687
VpaK11BI GGWCC 3 cut(s) 343, 357, 418
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.