Rh4BG081900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012168
Physical Location & Seq
Forward (+)
14302126 .. 14303873
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG081900.1

Sequence Viewer

Length: 504 bp
ATGAACTGTAATGGTCTAGTGATTGAGGAGCTCGAAAATCAAGAAAGGGCCATTGTGCCGTTCAACCCTGTAAACAACCCAATTCTCCATAACCCTTCTAATGTATCTGTCTCTCTTAGTCCTGACTTAATCTCTGGATTCAAGGACCAATTTGTTCGGTCCAGCTATCATTATGGCATGAAATCCGACAAGAGTGACGAGGAAGAGCAAGTGAACAAGGACCAATGTAAAGCGGTTGTTCCGTGGGTGCCATCTCAGCGGCTCCCACCTATGCCAGCTGTGGAAGTTTCGCAATCCGAGGATCGAGGAGAGCCAATGGAGGATGAGGAGATGGGCGCAGCGGCAATGGAGATCGAAGAGAGCAACACATCAGCAGCAGCAGGAGGAGCACAAGGAAGAAGCAATGGCTATGGTGGAGGGATTTGGGCGCAGTGGCAGCAACAGCACTGTATGATACCACAGCCTCCACAGAACACATCTACACCTATCACATGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.4

Weight (kDa)

4.45

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 3 cut(s) 233, 259, 341
AclWI GGATC 1 cut(s) 309
AgsI TTSAA 3 cut(s) 64, 142, 500
AluBI AGCT 3 cut(s) 31, 165, 278
AluI AGCT 3 cut(s) 31, 165, 278
Alw21I GWGCWC 2 cut(s) 33, 391
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 309
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 4 cut(s) 338, 374, 377, 436
AspLEI GCGC 2 cut(s) 338, 430
AspS9I GGNCC 4 cut(s) 48, 145, 159, 220
AvaII GGWCC 3 cut(s) 145, 159, 220
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 33, 391
BbvI GCAGC 4 cut(s) 350, 386, 389, 448
BccI CCATC 2 cut(s) 259, 325
BceAI ACGGC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 17
BisI GCNGC 6 cut(s) 260, 339, 342, 375, 378, 437
BlsI GCNGC 6 cut(s) 261, 340, 343, 376, 379, 438
Bme18I GGWCC 3 cut(s) 145, 159, 220
BmgT120I GGNCC 4 cut(s) 48, 145, 159, 220
BmiI GGNNCC 2 cut(s) 249, 263
BsaJI CCNNGG 2 cut(s) 242, 297
Bse3DI GCAATG 2 cut(s) 351, 409
BseDI CCNNGG 2 cut(s) 242, 297
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 351, 409
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 4 cut(s) 41, 321, 341, 399
BseXI GCAGC 4 cut(s) 350, 386, 389, 448
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 33, 391
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 33, 391
Bsp143I GATC 2 cut(s) 301, 351
BspACI CCGC 3 cut(s) 233, 259, 341
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 249, 263
BspPI GGATC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 351, 409
BssECI CCNNGG 2 cut(s) 242, 297
BssMI GATC 2 cut(s) 301, 351
Bst4CI ACNGT 2 cut(s) 8, 449
Bst6I CTCTTC 2 cut(s) 198, 351
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 116, 255
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 328
BstHHI GCGC 2 cut(s) 338, 430
BstKTI GATC 2 cut(s) 304, 354
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 301, 351
BstMWI GCNNNNNNNGC 4 cut(s) 256, 386, 436, 442
BstV1I GCAGC 4 cut(s) 350, 386, 389, 448
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 437, 445
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 2 cut(s) 338, 430
Cfr13I GGNCC 4 cut(s) 48, 145, 159, 220
CviAII CATG 2 cut(s) 178, 492
CviJI RGCY 9 cut(s) 31, 50, 165, 262, 278, 313, 408, 463, 496
CviKI_1 RGCY 9 cut(s) 31, 50, 165, 262, 278, 313, 408, 463, 496
DdeI CTNAG 2 cut(s) 116, 255
DpnI GATC 2 cut(s) 303, 353
DpnII GATC 2 cut(s) 301, 351
Eam1104I CTCTTC 2 cut(s) 198, 351
EarI CTCTTC 2 cut(s) 198, 351
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 145, 159, 220
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 2 cut(s) 181, 495
FaiI YATR 7 cut(s) 90, 174, 179, 272, 411, 452, 493
FatI CATG 2 cut(s) 177, 491
Fnu4HI GCNGC 6 cut(s) 260, 339, 342, 375, 378, 437
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 6 cut(s) 260, 339, 342, 375, 378, 437
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 337, 429
GluI GCNGC 6 cut(s) 260, 339, 342, 375, 378, 437
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 2 cut(s) 338, 430
Hin1II CATG 2 cut(s) 181, 495
Hin6I GCGC 2 cut(s) 336, 428
HinP1I GCGC 2 cut(s) 336, 428
HinfI GANTC 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 73, 214
Hpy188I TCNGA 2 cut(s) 187, 298
Hpy188III TCNNGA 3 cut(s) 41, 122, 135
Hpy8I GTNNAC 2 cut(s) 73, 214
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 8, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 386, 436, 442
HpyF3I CTNAG 2 cut(s) 116, 255
Hsp92II CATG 2 cut(s) 181, 495
HspAI GCGC 2 cut(s) 336, 428
Kzo9I GATC 2 cut(s) 301, 351
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 28, 267, 386
LpnPI CCDG 6 cut(s) 81, 120, 135, 175, 288, 366
Lsp1109I GCAGC 4 cut(s) 350, 386, 389, 448
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 303, 353
MboI GATC 2 cut(s) 301, 351
MboII GAAGA 3 cut(s) 215, 368, 408
MhlI GDGCHC 2 cut(s) 33, 391
MluCI AATT 2 cut(s) 81, 149
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 9 cut(s) 19, 193, 292, 299, 313, 319, 377, 410, 474
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 3 cut(s) 259, 278, 341
MwoI GCNNNNNNNGC 4 cut(s) 256, 386, 436, 442
NdeII GATC 2 cut(s) 301, 351
NlaIII CATG 2 cut(s) 181, 495
NlaIV GGNNCC 2 cut(s) 249, 263
NmuCI GTSAC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 6 cut(s) 261, 340, 343, 376, 379, 438
Psp124BI GAGCTC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 249, 263
PspPI GGNCC 4 cut(s) 48, 145, 159, 220
PvuII CAGCTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 6 cut(s) 260, 339, 342, 375, 378, 437
Sau3AI GATC 2 cut(s) 301, 351
Sau96I GGNCC 4 cut(s) 48, 145, 159, 220
SduI GDGCHC 2 cut(s) 33, 391
SetI ASST 5 cut(s) 33, 167, 271, 280, 487
SinI GGWCC 3 cut(s) 145, 159, 220
Sse9I AATT 2 cut(s) 81, 149
SsiI CCGC 3 cut(s) 233, 259, 341
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 33
TaaI ACNGT 2 cut(s) 8, 449
TaqI TCGA 3 cut(s) 33, 304, 354
TaqII GACCGA 1 cut(s) 147
TasI AATT 2 cut(s) 81, 149
TauI GCSGC 2 cut(s) 262, 344
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 437, 452
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 4 cut(s) 338, 374, 377, 436
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 17, 194
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 437, 452
VpaK11BI GGWCC 3 cut(s) 145, 159, 220
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.