Rh4CG091900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012168
Physical Location & Seq
Forward (+)
16626989 .. 16627876
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG091900.1

Sequence Viewer

Length: 711 bp
ATGGCAGGCTACTTCGTCTCCGAAGCAATGCAAAGGAACATGACCACCAAGAAGCGTAAGGAAGTGGGGCAGCTCGACCAAGTCAACGATCACTTCTCCGACTTCTCCCTCTCTTCTCCGGCCAGAAAGATTCGCCGTCTGGATGCGCAATTACCACCCATCTTGGAGGAAGAGGAGGTTGAATTCGACCCGGGTCAGATGAACTGTAATGGTCTAGTGACTGAGGAGCTCGAAAATCAAGAAAGTGCCATTGTGCCCTTCAACCCTGTAAATAACCCAATTCTCCATAACCCTTCTAATGTCTCTGTCTCTCTTAGTCCTGACTTAATCTCTGGATTCAAGGACCAATTTGTTCGGTCCAGCTATCATTATGGCATGAAATCCGACAAGAGTGAGGAGGAAGAGCAAGTGAACAAGGACCAATGTAAAGCGGTTGTTCCGTGGGTGCCATCTCAGCAGCTCCCACCTATGCCAGCGGTGGAGGTTTCGCAATCCGAGGATCGAGGAGAGCCAATGGAGGATGAGGAGATGGGCGCAGCGGCAATGGAGATCGAAGAGAGCAGCACGAGCAGCACATCAGCAGCCGCAGGAGGAGCACAAGGAACAATCAATGGCTATGGTGGAGGGATTTGGGCGCAGTGGCAGCAACAGCACTGTATGATACCACAGCCTCCACAGAACACATCGACACCCATCACATGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.12

Weight (kDa)

4.46

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 699
AciI CCGC 4 cut(s) 431, 476, 539, 585
AclWI GGATC 1 cut(s) 507
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 699
AgsI TTSAA 4 cut(s) 182, 262, 340, 707
AluBI AGCT 4 cut(s) 73, 229, 363, 460
AluI AGCT 4 cut(s) 73, 229, 363, 460
Alw21I GWGCWC 2 cut(s) 231, 598
Alw26I GTCTC 3 cut(s) 22, 307, 313
AlwI GGATC 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 7 cut(s) 70, 457, 536, 561, 570, 581, 643
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 3 cut(s) 148, 536, 637
AspS9I GGNCC 3 cut(s) 343, 357, 418
AsuC2I CCSGG 2 cut(s) 191, 192
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 3 cut(s) 343, 357, 418
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 565
Bbv12I GWGCWC 2 cut(s) 231, 598
BbvI GCAGC 7 cut(s) 82, 469, 548, 573, 582, 593, 655
BccI CCATC 4 cut(s) 167, 457, 523, 701
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 3 cut(s) 22, 307, 313
BfaI CTAG 1 cut(s) 215
BisI GCNGC 9 cut(s) 71, 458, 537, 540, 562, 571, 582, 585, 644
BlsI GCNGC 9 cut(s) 72, 459, 538, 541, 563, 572, 583, 586, 645
Bme1390I CCNGG 2 cut(s) 191, 192
Bme18I GGWCC 3 cut(s) 343, 357, 418
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 343, 357, 418
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 191, 192
BmsI GCATC 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 191, 192
BsaJI CCNNGG 3 cut(s) 190, 440, 495
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 699
Bse3DI GCAATG 2 cut(s) 33, 549
BseDI CCNNGG 3 cut(s) 190, 440, 495
BseGI GGATG 2 cut(s) 148, 526
BseLI CCNNNNNNNGG 1 cut(s) 699
BseMI GCAATG 2 cut(s) 33, 549
BseMII CTCAG 2 cut(s) 213, 467
BseRI GAGGAG 6 cut(s) 188, 239, 410, 519, 539, 606
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 7 cut(s) 82, 469, 548, 573, 582, 593, 655
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 2 cut(s) 231, 598
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 119, 191
BslI CCNNNNNNNGG 1 cut(s) 699
BsmAI GTCTC 3 cut(s) 22, 307, 313
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 231, 258, 598
Bsp143I GATC 3 cut(s) 88, 499, 549
BspACI CCGC 4 cut(s) 431, 476, 539, 585
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 214, 466
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 2 cut(s) 33, 549
BssECI CCNNGG 3 cut(s) 190, 440, 495
BssMI GATC 3 cut(s) 88, 499, 549
BssSI CACGAG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 565
Bst4CI ACNGT 2 cut(s) 206, 656
Bst6I CTCTTC 4 cut(s) 118, 165, 396, 549
BstC8I GCNNGC 2 cut(s) 7, 474
BstDEI CTNAG 3 cut(s) 222, 314, 453
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 148, 526
BstHHI GCGC 3 cut(s) 148, 536, 637
BstKTI GATC 3 cut(s) 91, 502, 552
BstMAI GTCTC 3 cut(s) 22, 307, 313
BstMBI GATC 3 cut(s) 88, 499, 549
BstMWI GCNNNNNNNGC 6 cut(s) 454, 567, 570, 593, 643, 649
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 189, 190
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 7 cut(s) 82, 469, 548, 573, 582, 593, 655
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 440
BtsCI GGATG 2 cut(s) 148, 526
BtsI GCAGTG 1 cut(s) 644
BtsIMutI CAGTG 2 cut(s) 644, 652
Cac8I GCNNGC 2 cut(s) 7, 474
CfoI GCGC 3 cut(s) 148, 536, 637
Cfr13I GGNCC 3 cut(s) 343, 357, 418
Cfr9I CCCGGG 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 40, 376, 699
DdeI CTNAG 3 cut(s) 222, 314, 453
DpnI GATC 3 cut(s) 90, 501, 551
DpnII GATC 3 cut(s) 88, 499, 549
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 4 cut(s) 118, 165, 396, 549
EarI CTCTTC 4 cut(s) 118, 165, 396, 549
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 343, 357, 418
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 3 cut(s) 43, 379, 702
FaiI YATR 8 cut(s) 41, 288, 372, 377, 470, 618, 659, 700
FatI CATG 3 cut(s) 39, 375, 698
Fnu4HI GCNGC 9 cut(s) 71, 458, 537, 540, 562, 571, 582, 585, 644
FokI GGATG 2 cut(s) 155, 533
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 9 cut(s) 71, 458, 537, 540, 562, 571, 582, 585, 644
FspBI CTAG 1 cut(s) 215
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 3 cut(s) 147, 535, 636
GluI GCNGC 9 cut(s) 71, 458, 537, 540, 562, 571, 582, 585, 644
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 119, 191
HhaI GCGC 3 cut(s) 148, 536, 637
Hin1II CATG 3 cut(s) 43, 379, 702
Hin6I GCGC 3 cut(s) 146, 534, 635
HinP1I GCGC 3 cut(s) 146, 534, 635
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 130, 336
HpaII CCGG 2 cut(s) 119, 191
Hpy166II GTNNAC 2 cut(s) 85, 412
Hpy188I TCNGA 5 cut(s) 22, 100, 198, 385, 496
Hpy188III TCNNGA 4 cut(s) 140, 239, 320, 333
Hpy8I GTNNAC 2 cut(s) 85, 412
HpyAV CCTTC 2 cut(s) 268, 303
HpyCH4III ACNGT 2 cut(s) 206, 656
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 6 cut(s) 454, 567, 570, 593, 643, 649
HpyF3I CTNAG 3 cut(s) 222, 314, 453
Hsp92II CATG 3 cut(s) 43, 379, 702
HspAI GCGC 3 cut(s) 146, 534, 635
Kzo9I GATC 3 cut(s) 88, 499, 549
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 226, 465, 593
Lsp1109I GCAGC 7 cut(s) 82, 469, 548, 573, 582, 593, 655
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 90, 501, 551
MboI GATC 3 cut(s) 88, 499, 549
MboII GAAGA 4 cut(s) 105, 182, 413, 566
MhlI GDGCHC 3 cut(s) 231, 258, 598
MluCI AATT 4 cut(s) 149, 182, 279, 347
MmeI TCCRAC 2 cut(s) 123, 408
MseI TTAA 1 cut(s) 326
MspA1I CMGCKG 2 cut(s) 476, 539
MspI CCGG 2 cut(s) 119, 191
MspR9I CCNGG 2 cut(s) 191, 192
MwoI GCNNNNNNNGC 6 cut(s) 454, 567, 570, 593, 643, 649
NciI CCSGG 2 cut(s) 191, 192
NdeII GATC 3 cut(s) 88, 499, 549
NlaIII CATG 3 cut(s) 43, 379, 702
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 130, 336
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 699
PkrI GCNGC 9 cut(s) 72, 459, 538, 541, 563, 572, 583, 586, 645
PshAI GACNNNNGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 3 cut(s) 343, 357, 418
PsyI GACNNNGTC 1 cut(s) 80
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 9 cut(s) 71, 458, 537, 540, 562, 571, 582, 585, 644
Sau3AI GATC 3 cut(s) 88, 499, 549
Sau96I GGNCC 3 cut(s) 343, 357, 418
ScrFI CCNGG 2 cut(s) 191, 192
SduI GDGCHC 3 cut(s) 231, 258, 598
SetI ASST 7 cut(s) 75, 180, 231, 365, 462, 469, 486
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 3 cut(s) 343, 357, 418
SmaI CCCGGG 1 cut(s) 192
Sse9I AATT 4 cut(s) 149, 182, 279, 347
SsiI CCGC 4 cut(s) 431, 476, 539, 585
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 189, 190
TaaI ACNGT 2 cut(s) 206, 656
TaqI TCGA 6 cut(s) 75, 186, 231, 502, 552, 686
TaqII GACCGA 1 cut(s) 345
TasI AATT 4 cut(s) 149, 182, 279, 347
TauI GCSGC 2 cut(s) 542, 587
TfiI GAWTC 2 cut(s) 130, 336
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 2 cut(s) 644, 659
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 7 cut(s) 70, 457, 536, 561, 570, 581, 643
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 215, 392
TspGWI ACGGA 1 cut(s) 429
TspMI CCCGGG 1 cut(s) 190
TspRI CASTG 2 cut(s) 644, 659
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 699
VpaK11BI GGWCC 3 cut(s) 343, 357, 418
XapI RAATTY 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 190
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.