Rh4DG077000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012168
Physical Location & Seq
Forward (+)
11429592 .. 11431262
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG077000.1

Sequence Viewer

Length: 786 bp
ATGGCAGGCTACTTCGTCTCCGAAGCAATGCAAAGGAACATGACCACCAAGAAGCGTAAGGAAGTGGGGCAGCTCGACCAAGTCAACGACCACTTCTCCGACTTCTCCCTCTCTTCTCCGGCCAGAAAGATTCGCCGTCTGGTATGTAACCCCCCACATCCTTTGCTTTCTCTTTGGATTTCAGCTCATTGTTCTCATCCAATGTCGGAATTAAACTTACAGGATGCGCAATTACCACCCATCTTGGAGGAAGAGGAGGTTGAATTCGACCCGGGTCAGATGAACTGTAATGGTCTAGTGATTGAGGAGCTCGAAAATCAAGAAAGGGCCATTGTGCCCTTCAACCCTGTAAATAACCCAATTCTCCATAACCCTTCAAATGTCTCTGTCTCTCTTAGTCCTGACTTAATCTCTGGATTCAAGGACCAATTTGTTCGGTCCAGCTATCATTATGGCATGAAATCCGACAAGAGTGAGGAAGAAGAGCAAGTGAACAAGGACCAATGTAAAGCGGTTGTTCCGTGGGTGCCATCTCACCAGCTCCCACCTATGCCAGCTGTGGAGGTTACGCAATCCGAGGAGGATCGAGGAGAGGCAATGGAGGATGAGGAGATGGGCGCAGCGGCAATGGAGATCGAAGAGAGTAGCACATCAACAGGAGCAGGAGGAGCACAAGGAACAAGCAATGGCTATGGTGGAGGGATTTGGGCGCAGTGGCAGCAACAACACTGTATGATACCACAGCCTCCACAGAACACATCTACACCTATCACATGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.04

Weight (kDa)

4.65

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35320
fragaria_vesca FvH4_4g06450 FvH4_4g06450
malus_domestica MD13G1236100.v1.1 MD16G1241100.v1.1
prunus_persica Prupe.1G067800_v2.0.a1
pyrus_communis pycom16g20180
rosa_chinensis RchiOBHm_Chr4g0398241
rosa_laevigata RLG00000009375
rosa_multiflora Rmu_sc0004094.1_g000005 Rmu_ssc0000112.1_g000002
rosa_roxburghii Rroxscaffold_5G00343220
rosa_rugosa Rorug04G0007100 Rorug04G0007100
rosa_samantha Rh4AG084500 Rh4BG081900 Rh4CG091900 Rh4DG077000
rosa_wichuraiana Rw4G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 526
AciI CCGC 2 cut(s) 512, 623
AclWI GGATC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 263
AgsI TTSAA 5 cut(s) 263, 343, 378, 421, 782
AluBI AGCT 6 cut(s) 73, 185, 310, 444, 541, 557
AluI AGCT 6 cut(s) 73, 185, 310, 444, 541, 557
Alw21I GWGCWC 2 cut(s) 312, 673
Alw26I GTCTC 3 cut(s) 22, 388, 394
AlwI GGATC 1 cut(s) 591
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 2 cut(s) 120, 327
ApeKI GCWGC 3 cut(s) 70, 620, 718
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 3 cut(s) 229, 620, 712
AspS9I GGNCC 4 cut(s) 327, 424, 438, 499
AsuC2I CCSGG 2 cut(s) 272, 273
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 3 cut(s) 424, 438, 499
BaeGI GKGCMC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 312, 673
BbvI GCAGC 3 cut(s) 82, 632, 730
BccI CCATC 3 cut(s) 248, 538, 607
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 272, 273
BcoDI GTCTC 3 cut(s) 22, 388, 394
BfaI CTAG 1 cut(s) 296
BisI GCNGC 4 cut(s) 71, 621, 624, 719
BlsI GCNGC 4 cut(s) 72, 622, 625, 720
Bme1390I CCNGG 2 cut(s) 272, 273
Bme18I GGWCC 3 cut(s) 424, 438, 499
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 4 cut(s) 327, 424, 438, 499
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 2 cut(s) 272, 273
BmsI GCATC 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 273
BpuMI CCSGG 2 cut(s) 272, 273
BsaJI CCNNGG 3 cut(s) 271, 521, 576
BsaXI ACNNNNNCTCC 3 cut(s) 32, 80, 110
Bse3DI GCAATG 4 cut(s) 33, 603, 633, 691
BseDI CCNNGG 3 cut(s) 271, 521, 576
BseGI GGATG 4 cut(s) 157, 196, 229, 610
BseMI GCAATG 4 cut(s) 33, 603, 633, 691
BseRI GAGGAG 6 cut(s) 269, 320, 593, 603, 623, 681
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 3 cut(s) 82, 632, 730
BshFI GGCC 2 cut(s) 122, 329
BshNI GGYRCC 1 cut(s) 526
BsiHKAI GWGCWC 2 cut(s) 312, 673
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 119, 272
BsmAI GTCTC 3 cut(s) 22, 388, 394
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 122, 329
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 312, 339, 673
Bsp143I GATC 2 cut(s) 583, 633
BspACI CCGC 2 cut(s) 512, 623
BspANI GGCC 2 cut(s) 122, 329
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 1 cut(s) 591
BspQI GCTCTTC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 4 cut(s) 33, 603, 633, 691
BssECI CCNNGG 3 cut(s) 271, 521, 576
BssMI GATC 2 cut(s) 583, 633
Bst4CI ACNGT 2 cut(s) 287, 731
Bst6I CTCTTC 4 cut(s) 118, 246, 477, 633
BstC8I GCNNGC 2 cut(s) 7, 555
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 4 cut(s) 157, 196, 229, 610
BstHHI GCGC 3 cut(s) 229, 620, 712
BstKTI GATC 2 cut(s) 586, 636
BstMAI GTCTC 3 cut(s) 22, 388, 394
BstMBI GATC 2 cut(s) 583, 633
BstMWI GCNNNNNNNGC 2 cut(s) 668, 718
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 270, 271
BstSLI GKGCMC 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 82, 632, 730
BsuRI GGCC 2 cut(s) 122, 329
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 4 cut(s) 157, 196, 229, 610
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 2 cut(s) 719, 727
Cac8I GCNNGC 2 cut(s) 7, 555
CfoI GCGC 3 cut(s) 229, 620, 712
Cfr13I GGNCC 4 cut(s) 327, 424, 438, 499
Cfr9I CCCGGG 1 cut(s) 271
CspCI CAANNNNNGTGG 4 cut(s) 144, 179, 225, 260
CviAII CATG 3 cut(s) 40, 457, 774
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 585, 635
DpnII GATC 2 cut(s) 583, 633
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 4 cut(s) 118, 246, 477, 633
EarI CTCTTC 4 cut(s) 118, 246, 477, 633
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 424, 438, 499
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 3 cut(s) 43, 460, 777
FaiI YATR 9 cut(s) 41, 145, 369, 453, 458, 551, 693, 734, 775
FatI CATG 3 cut(s) 39, 456, 773
Fnu4HI GCNGC 4 cut(s) 71, 621, 624, 719
FokI GGATG 4 cut(s) 144, 183, 236, 617
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 71, 621, 624, 719
FspBI CTAG 1 cut(s) 296
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 3 cut(s) 228, 619, 711
GluI GCNGC 4 cut(s) 71, 621, 624, 719
HaeIII GGCC 2 cut(s) 122, 329
HapII CCGG 2 cut(s) 119, 272
HhaI GCGC 3 cut(s) 229, 620, 712
Hin1II CATG 3 cut(s) 43, 460, 777
Hin6I GCGC 3 cut(s) 227, 618, 710
HinP1I GCGC 3 cut(s) 227, 618, 710
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 130, 417
HpaII CCGG 2 cut(s) 119, 272
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 2 cut(s) 85, 493
Hpy188I TCNGA 6 cut(s) 22, 100, 208, 279, 466, 577
Hpy188III TCNNGA 3 cut(s) 320, 401, 414
Hpy8I GTNNAC 2 cut(s) 85, 493
HpyAV CCTTC 2 cut(s) 349, 384
HpyCH4III ACNGT 2 cut(s) 287, 731
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 718
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 3 cut(s) 43, 460, 777
HspAI GCGC 3 cut(s) 227, 618, 710
Kzo9I GATC 2 cut(s) 583, 633
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 4 cut(s) 307, 546, 659, 668
Lsp1109I GCAGC 3 cut(s) 82, 632, 730
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 146, 565
MalI GATC 2 cut(s) 585, 635
MboI GATC 2 cut(s) 583, 633
MboII GAAGA 5 cut(s) 105, 263, 491, 494, 650
MhlI GDGCHC 3 cut(s) 312, 339, 673
MluCI AATT 5 cut(s) 209, 230, 263, 360, 428
MmeI TCCRAC 3 cut(s) 123, 186, 489
MseI TTAA 2 cut(s) 212, 407
MspA1I CMGCKG 2 cut(s) 557, 623
MspI CCGG 2 cut(s) 119, 272
MspR9I CCNGG 2 cut(s) 272, 273
MwoI GCNNNNNNNGC 2 cut(s) 668, 718
NciI CCSGG 2 cut(s) 272, 273
NdeII GATC 2 cut(s) 583, 633
NlaIII CATG 3 cut(s) 43, 460, 777
NlaIV GGNNCC 1 cut(s) 528
NsbI TGCGCA 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 130, 417
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 72, 622, 625, 720
PshAI GACNNNNGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 4 cut(s) 327, 424, 438, 499
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 557
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 212, 407
SatI GCNGC 4 cut(s) 71, 621, 624, 719
Sau3AI GATC 2 cut(s) 583, 633
Sau96I GGNCC 4 cut(s) 327, 424, 438, 499
ScrFI CCNGG 2 cut(s) 272, 273
SduI GDGCHC 3 cut(s) 312, 339, 673
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 3 cut(s) 424, 438, 499
SmaI CCCGGG 1 cut(s) 273
Sse9I AATT 5 cut(s) 209, 230, 263, 360, 428
SsiI CCGC 2 cut(s) 512, 623
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 270, 271
TaaI ACNGT 2 cut(s) 287, 731
TaqI TCGA 5 cut(s) 75, 267, 312, 586, 636
TaqII GACCGA 1 cut(s) 426
TasI AATT 5 cut(s) 209, 230, 263, 360, 428
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 2 cut(s) 130, 417
Tru1I TTAA 2 cut(s) 212, 407
Tru9I TTAA 2 cut(s) 212, 407
TscAI CASTG 2 cut(s) 719, 734
TseI GCWGC 3 cut(s) 70, 620, 718
TspDTI ATGAA 2 cut(s) 296, 473
TspGWI ACGGA 1 cut(s) 510
TspMI CCCGGG 1 cut(s) 271
TspRI CASTG 2 cut(s) 719, 734
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 424, 438, 499
XapI RAATTY 1 cut(s) 263
XmaI CCCGGG 1 cut(s) 271
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.