FvH4_4g07060

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001430
Physical Location & Seq
Reverse (-)
6464566 .. 6471956
7391 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07060.t1

Sequence Viewer

Length: 1593 bp
ATGGGAAAGAAATCTGCCACCTCTTTAACCTCCTCGTCGCCGCCTTCGTTGTGGCGGCGATATCGATTGGCACTCGTCATTATCTCCTTGCTGGCTCTCACATGGCTGCTTTTTGACCACCAATCCCTCACCCTGGAGGACCAGGTAATGGTGTCCAGGTTGAATAAGGAGCTGACAATTTTGAAGAATCAGTTACAAAATGTGAGGAAGCAGATAAGAGGGTGGAGCATTGTTGAAGAGGATGATCCTGTCAATGTAGAACGACGAAATGCCGTTAGGGATGCCATGATTCATGCTTGGACTTGTTATGAAAAGTATGCGTGGGGTCATGATGAACTTCAGCCACAGACGAAGGACGCTACTGACAGTTTCGGTGGTCTTGGAGCAACTTTAGTGGATTCTCTTGATACATTGTACATAATGGGTCTTGACCAGCAATTTCAAAGAGCTAGAGAGTGGGTTGCAAGCTCGTTGGATTTCAACAAGAATTACGGGGCTAGTGTTTTTGAGACAACCATAAGAGTTATAGGTGGACTTCTTAGCGCATATGATCTGTCAGAAGACAAACTCTTCCTTGACAAGGCTAGAGATATTGCAGATAGGTTGCTGCCTGCATGGGATACACCTTCTGGAATCCCCTACAACATAATCAACTTGATGTATGGTGATGCCCATAACCCTAAGTGGGCAGGGGGAAAAAGTATTCTGGCAGATGCTGCTTCGGAACAGCTTGAATTTATTGCTCTATCTCAAAGGACAAAAGATCCCAAGTACCAGCAGAAGGTGGAATATGTCATTAAAGAATTTCATAAAATCTTCCCTGCTGATGGATTGCTTCCCATATATCTTGATCCTCACACTGGAACAATGTCAAAATCAAAAATTACATTTGGTGCCTTGGGGGATAGTTTTTATGAATATCTACTCAAAGCTTGGATTCAAGGAAACAAAACAGCAGCCGTAAAACACTACAGAGAGATGTGGGAGACATCAATGGAAGGTCTAAAAAGCTTGACTCGGAGGACAACACCATCTTCATTTGCATACATATGCGAGAAGATTGGAAACTCGCTAATTGACAAGATGGATGAATTAGCCTGCTTTGCTCCTGGCATGCTGGCTCTAGGATCTTCTGGCTATGACCCTGGCCAAGCTGAAAAGATGTTATCCCTTGCTGAAGAGCTTGCATGGACTTGTTATAATTTCTATCAGAGAACACCTACAAAATTGGCTGCGGAGAACTATAACTTTCTCGCTGGACAGGACATGACGGTGGGAACAACATGGAACATTTTGAGGCCTGAGACTATTGAGTCACTTTTCTACCTATGGCGGTTAACTGGGAACAAAACTTACCAAGAATGGGGTTGGAACATTTTCCAAGCATTTGAAAATAACTCTCGTACAGATACAGGATATAGTGGACTTAAAGATGTAAGTAGAGGTGATAAAGACAATATGATGCAGACCTTCTTCCTTGCAGAAACGCTGAAGTATCTCTACCTCCTCTTTTCACCTCCGTCGTTCATCTCTTTGGACGAATGGGTGTTTAACACAGAAGCCCACCCACTACGAATTGTGACTCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141
Pfam Domains
Protein Families
Glyco_hydro_47

Protein Analysis

531

Amino Acids

60.41

Weight (kDa)

5.56

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 95 - 526 3.9e-161 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AasI GACNNNNNNGTC 1 cut(s) 1312
AccB1I GGYRCC 1 cut(s) 893
AccB7I CCANNNNNTGG 1 cut(s) 148
AciI CCGC 4 cut(s) 41, 55, 1235, 1333
AclWI GGATC 4 cut(s) 239, 758, 845, 1135
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 2 cut(s) 734, 803
AcuI CTGAAG 3 cut(s) 323, 1197, 1511
AfaI GTAC 3 cut(s) 416, 773, 1405
AfiI CCNNNNNNNGG 8 cut(s) 133, 148, 580, 685, 781, 827, 860, 1363
AgsI TTSAA 8 cut(s) 163, 184, 236, 443, 481, 734, 941, 1391
AjnI CCWGG 5 cut(s) 132, 141, 155, 1108, 1144
AluBI AGCT 8 cut(s) 172, 449, 468, 730, 932, 1011, 1154, 1183
AluI AGCT 8 cut(s) 172, 449, 468, 730, 932, 1011, 1154, 1183
Alw26I GTCTC 3 cut(s) 503, 980, 1298
AlwI GGATC 4 cut(s) 239, 758, 845, 1135
AlwNI CAGNNNCTG 1 cut(s) 716
AoxI GGCC 2 cut(s) 1147, 1298
ApeKI GCWGC 5 cut(s) 106, 607, 716, 956, 1232
ApoI RAATTY 2 cut(s) 734, 803
Asp700I GAANNNNTTC 1 cut(s) 1376
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 121, 677, 1457, 1506
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 1149
BanI GGYRCC 1 cut(s) 893
BarI GAAGNNNNNNTAC 2 cut(s) 1484, 1516
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 5 cut(s) 93, 594, 703, 968, 1219
BccI CCATC 3 cut(s) 821, 1039, 1078
BceAI ACGGC 2 cut(s) 257, 944
BciT130I CCWGG 5 cut(s) 134, 143, 157, 1110, 1146
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 503, 980, 1298
BfaI CTAG 4 cut(s) 450, 498, 585, 1124
BfmI CTRYAG 1 cut(s) 970
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 7 cut(s) 41, 56, 107, 608, 717, 957, 1233
BlsI GCNGC 7 cut(s) 42, 57, 108, 609, 718, 958, 1234
Bme1390I CCNGG 5 cut(s) 134, 143, 157, 1110, 1146
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 895
BmrFI CCNGG 5 cut(s) 134, 143, 157, 1110, 1146
BmrI ACTGGG 1 cut(s) 1350
BmsI GCATC 4 cut(s) 271, 658, 703, 1452
BmuI ACTGGG 1 cut(s) 1350
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 132, 897, 1144
Bsc4I CCNNNNNNNGG 8 cut(s) 133, 148, 580, 685, 781, 827, 860, 1363
Bse1I ACTGG 2 cut(s) 865, 1345
BseBI CCWGG 5 cut(s) 134, 143, 157, 1110, 1146
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 132, 897, 1144
BseGI GGATG 3 cut(s) 247, 286, 1093
BseLI CCNNNNNNNGG 8 cut(s) 133, 148, 580, 685, 781, 827, 860, 1363
BseMII CTCAG 1 cut(s) 1293
BseNI ACTGG 2 cut(s) 865, 1345
BseRI GAGGAG 2 cut(s) 22, 1496
BseXI GCAGC 5 cut(s) 93, 594, 703, 968, 1219
BshFI GGCC 2 cut(s) 1149, 1300
BshNI GGYRCC 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 64
BslI CCNNNNNNNGG 8 cut(s) 133, 148, 580, 685, 781, 827, 860, 1363
BsmAI GTCTC 3 cut(s) 503, 980, 1298
BsnI GGCC 2 cut(s) 1149, 1300
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 244, 550, 763, 850, 1127
BspACI CCGC 4 cut(s) 41, 55, 1235, 1333
BspANI GGCC 2 cut(s) 1149, 1300
BspCNI CTCAG 1 cut(s) 1294
BspDI ATCGAT 1 cut(s) 64
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 895
BspPI GGATC 4 cut(s) 239, 758, 845, 1135
BspQI GCTCTTC 1 cut(s) 1173
BspT107I GGYRCC 1 cut(s) 893
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 2 cut(s) 865, 1345
BssECI CCNNGG 3 cut(s) 132, 897, 1144
BssMI GATC 5 cut(s) 244, 550, 763, 850, 1127
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 5 cut(s) 134, 143, 157, 1110, 1146
Bst4CI ACNGT 2 cut(s) 368, 1273
Bst6I CTCTTC 3 cut(s) 231, 575, 1173
BstAPI GCANNNNNTGC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 7 cut(s) 93, 466, 612, 1099, 1115, 1119, 1185
BstDEI CTNAG 3 cut(s) 539, 681, 1302
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 3 cut(s) 247, 286, 1093
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 5 cut(s) 247, 553, 766, 853, 1130
BstMAI GTCTC 3 cut(s) 503, 980, 1298
BstMBI GATC 5 cut(s) 244, 550, 763, 850, 1127
BstMWI GCNNNNNNNGC 2 cut(s) 716, 1103
BstNI CCWGG 5 cut(s) 134, 143, 157, 1110, 1146
BstNSI RCATGY 1 cut(s) 1117
BstSCI CCNGG 5 cut(s) 132, 141, 155, 1108, 1144
BstSFI CTRYAG 1 cut(s) 970
BstV1I GCAGC 5 cut(s) 93, 594, 703, 968, 1219
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 763, 1127
BstYI RGATCY 2 cut(s) 763, 1127
Bsu15I ATCGAT 1 cut(s) 64
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 1149, 1300
BsuTUI ATCGAT 1 cut(s) 64
BtsCI GGATG 3 cut(s) 247, 286, 1093
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 7 cut(s) 93, 466, 612, 1099, 1115, 1119, 1185
CaiI CAGNNNCTG 1 cut(s) 716
CciI TCATGA 1 cut(s) 328
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 365
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 3 cut(s) 415, 772, 1404
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviQI GTAC 3 cut(s) 415, 772, 1404
DdeI CTNAG 3 cut(s) 539, 681, 1302
DpnI GATC 5 cut(s) 246, 552, 765, 852, 1129
DpnII GATC 5 cut(s) 244, 550, 763, 850, 1127
DrdI GACNNNNNNGTC 1 cut(s) 1312
DseDI GACNNNNNNGTC 1 cut(s) 1312
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 3 cut(s) 231, 575, 1173
EarI CTCTTC 3 cut(s) 231, 575, 1173
Eco130I CCWWGG 1 cut(s) 897
Eco147I AGGCCT 1 cut(s) 1300
Eco32I GATATC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 3 cut(s) 323, 1197, 1511
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoRII CCWGG 5 cut(s) 132, 141, 155, 1108, 1144
EcoRV GATATC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 897
FauNDI CATATG 2 cut(s) 547, 1049
Fnu4HI GCNGC 7 cut(s) 41, 56, 107, 608, 717, 957, 1233
FokI GGATG 3 cut(s) 254, 293, 1100
Fsp4HI GCNGC 7 cut(s) 41, 56, 107, 608, 717, 957, 1233
FspBI CTAG 4 cut(s) 450, 498, 585, 1124
GlaI GCGC 1 cut(s) 544
GluI GCNGC 7 cut(s) 41, 56, 107, 608, 717, 957, 1233
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 2 cut(s) 1149, 1300
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 545
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HincII GTYRAC 1 cut(s) 1338
HindII GTYRAC 1 cut(s) 1338
HindIII AAGCTT 2 cut(s) 930, 1009
HinfI GANTC 8 cut(s) 187, 289, 398, 633, 937, 1015, 1313, 1582
HpaI GTTAAC 1 cut(s) 1338
HphI GGTGA 4 cut(s) 121, 677, 1457, 1506
Hpy166II GTNNAC 3 cut(s) 533, 1338, 1424
Hpy188I TCNGA 4 cut(s) 559, 724, 1020, 1212
Hpy188III TCNNGA 5 cut(s) 329, 404, 428, 630, 848
Hpy8I GTNNAC 3 cut(s) 533, 1338, 1424
Hpy99I CGWCG 3 cut(s) 40, 267, 1525
HpyAV CCTTC 6 cut(s) 54, 346, 636, 775, 992, 1480
HpyCH4III ACNGT 2 cut(s) 368, 1273
HpyCH4V TGCA 7 cut(s) 464, 596, 614, 1043, 1187, 1465, 1481
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 1103
HpyF3I CTNAG 3 cut(s) 539, 681, 1302
HspAI GCGC 1 cut(s) 543
KspAI GTTAAC 1 cut(s) 1338
Kzo9I GATC 5 cut(s) 244, 550, 763, 850, 1127
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 4 cut(s) 169, 225, 383, 1111
Lsp1109I GCAGC 5 cut(s) 93, 594, 703, 968, 1219
LweI GCATC 4 cut(s) 271, 658, 703, 1452
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 4 cut(s) 450, 498, 585, 1124
MaeIII GTNAC 3 cut(s) 192, 1314, 1579
MalI GATC 5 cut(s) 246, 552, 765, 852, 1129
MboI GATC 5 cut(s) 244, 550, 763, 850, 1127
MflI RGATCY 2 cut(s) 763, 1127
MlsI TGGCCA 1 cut(s) 1149
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 3 cut(s) 1009, 1322, 1576
MmeI TCCRAC 2 cut(s) 453, 1349
Mox20I TGGCCA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 1376
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 5 cut(s) 26, 798, 1337, 1428, 1551
MslI CAYNNNNRTG 2 cut(s) 1048, 1271
Msp20I TGGCCA 1 cut(s) 1149
MspR9I CCNGG 5 cut(s) 134, 143, 157, 1110, 1146
MvaI CCWGG 5 cut(s) 134, 143, 157, 1110, 1146
MwoI GCNNNNNNNGC 2 cut(s) 716, 1103
NdeI CATATG 2 cut(s) 547, 1049
NdeII GATC 5 cut(s) 244, 550, 763, 850, 1127
NlaIV GGNNCC 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 1314, 1579
NspI RCATGY 1 cut(s) 1117
PaeI GCATGC 1 cut(s) 1117
PagI TCATGA 1 cut(s) 328
PceI AGGCCT 1 cut(s) 1300
PciSI GCTCTTC 1 cut(s) 1173
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 1376
PfeI GAWTC 5 cut(s) 187, 289, 398, 633, 937
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 7 cut(s) 42, 57, 108, 609, 718, 958, 1234
PleI GAGTC 3 cut(s) 1009, 1321, 1576
PpsI GAGTC 3 cut(s) 1009, 1321, 1576
PsiI TTATAA 1 cut(s) 1200
Psp6I CCWGG 5 cut(s) 132, 141, 155, 1108, 1144
PspGI CCWGG 5 cut(s) 132, 141, 155, 1108, 1144
PspN4I GGNNCC 1 cut(s) 895
PspPI GGNCC 1 cut(s) 139
PsrI GAACNNNNNNTAC 2 cut(s) 1337, 1369
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 763, 1127
RsaI GTAC 3 cut(s) 416, 773, 1405
RsaNI GTAC 3 cut(s) 415, 772, 1404
RseI CAYNNNNRTG 2 cut(s) 1048, 1271
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 5 cut(s) 26, 798, 1337, 1428, 1551
SatI GCNGC 7 cut(s) 41, 56, 107, 608, 717, 957, 1233
Sau3AI GATC 5 cut(s) 244, 550, 763, 850, 1127
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 3 cut(s) 1009, 1322, 1576
ScrFI CCNGG 5 cut(s) 134, 143, 157, 1110, 1146
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 4 cut(s) 271, 658, 703, 1452
SfcI CTRYAG 1 cut(s) 970
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 1048, 1271
SphI GCATGC 1 cut(s) 1117
SseBI AGGCCT 1 cut(s) 1300
SsiI CCGC 4 cut(s) 41, 55, 1235, 1333
SspMI CTAG 4 cut(s) 450, 498, 585, 1124
StuI AGGCCT 1 cut(s) 1300
StyD4I CCNGG 5 cut(s) 132, 141, 155, 1108, 1144
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 2 cut(s) 368, 1273
TaqI TCGA 1 cut(s) 64
TatI WGTACW 1 cut(s) 414
TauI GCSGC 2 cut(s) 43, 58
TfiI GAWTC 5 cut(s) 187, 289, 398, 633, 937
Tru1I TTAA 5 cut(s) 26, 798, 1337, 1428, 1551
Tru9I TTAA 5 cut(s) 26, 798, 1337, 1428, 1551
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 1314, 1579
TseI GCWGC 5 cut(s) 106, 607, 716, 956, 1232
Tsp45I GTSAC 2 cut(s) 1314, 1579
TspDTI ATGAA 8 cut(s) 281, 324, 348, 797, 930, 1026, 1104, 1516
TspGWI ACGGA 1 cut(s) 1509
TspRI CASTG 1 cut(s) 865
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 139
XagI CCTNNNNNAGG 1 cut(s) 578
XapI RAATTY 2 cut(s) 734, 803
XceI RCATGY 1 cut(s) 1117
XmnI GAANNNNTTC 1 cut(s) 1376
XspI CTAG 4 cut(s) 450, 498, 585, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.