Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001430

Physical Location & Seq

Genomic Coordinates Reverse (-)

69441642 .. 69450126

Gene Structure 8485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG475700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGACCAGCCGCAAACAAAGAATGGTGTCAATAGCTTTGGTGGTCTTGGTGCAACACTAGTAGACTCTCTTGACACTCTTTACATAATGGGTCTTCATGAGCAGTTTCAGAAAGCTAGAGAGTGGGTTGCAACCTCATTGGATTTTAACAAGGACTATGAGGCTAGTGTATTTGAGACAACCATAAGAGTTGTAGGTGGACTTCTCAGTACATATGATCTCTCAGAAGATAAACTTTTCCTTGATAAGGCTATAGAGATTGCAGATAGATTGCTGCCTGCATGGAATACACCTAGTGGGATCCCTTACAACATTATCAACTTGGCACATGGAAACGCACACAATCCTTCTTGGACTGGAGGGGAAAGTATCTTAGCAGATTCTGGGACGGAGCAGGTGGAGTTTATTGCTCTTTCTCAGAGGACAGGAGACCCAAAGTATCAGCGAAAGGCTGAGAATGTTATAGCGCAGCTTAACAAAACTTTCCCTGATGATGGTTTGCTTCCTATTTATATTGACCCTGACAGAGGAACACCAGGATACGCAACCATTACCTTTGGAGCCATGGGTGACAGCTTCTATGAATATTTACTCAAAGTTTGGATACAGGGGAATAAAACTTCAGCAGTGAAGCCTTATAGAGATATGTGGGAGAAATCAATGATAGGTCTGTCGAGCTTGATCAGGAGAACAACGCCATCGTCTTTTACATATATATGCGAGAAGAATGGAAATTCTCTCACAAACAAGATGGACGAACTAGCATGCTTTGCTCCAGGAATGCTGGCTTTAGGATCATCTGGTTATGGTCCTGATGAATCTAAGAAATTCTTATCACTTGCAGAGGAGCTTGCTTGGACATGCTATAATTTTTACCAGTCAACACCAACAAAATTAGCTGGGGAGAACTATTTCTTTCATGCAGGGCAGGACTTGAGTGTGGGTACGTCATGGAATATATTAAGACCGGAGACAGTTGAATCACTCTTTTATCTATGGCGTTTGACTGGAAATAAGACATACAAAGAGTGGGCCTGGAATATTTTTCAAGCATTTGAAAAGAACTCCCGTATAGACTCGGGATATGTTGGACTGAAAGATGTTAACACTGGTGTGAAAGACAATATGATGCAAAGCTTCTTTCTTGCGGAGACTCTCAAATATCTCTATCTTCTCTTTTCACCCCCTTCAGTTATTTCCCTAGATGAATGGGTTTTCAACACGGAGGCTCACCCACTGAAAATTGTGACCAGGCATGATGGAAAAAGTTCTGGAATTACAAATGGTGATAGACCAAAGATTAGATTGCGTGGCAGGAAGGAAGGTCGACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

444

Amino Acids

49.85

Weight (kDa)

5.56

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	3 - 415	1.3e-150	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51590 AT1G51590 AT3G21160 AT3G21160
fragaria_vesca	FvH4_4g07060 FvH4_4g07060 FvH4_4g07060 FvH4_6g37151 FvH4_6g37151
malus_domestica	MD09G1160700.v1.1 MD13G1240100.v1.1 MD17G1146500.v1.1
prunus_persica	Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1
pyrus_communis	pycom13g21320 pycom17g13940
rosa_chinensis	RchiOBHm_Chr2g0149781 RchiOBHm_Chr4g0399181
rosa_laevigata	RLG00000009292 RLG00000020443
rosa_multiflora	Rmu_sc0002582.1_g000001 Rmu_sc0018143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097730 Rroxscaffold_5G00344140
rosa_rugosa	Rorug02G0416000 Rorug04G0014600 Rorug04G0014700
rosa_samantha	Rh2AG475700 Rh2BG487100 Rh2CG461200 Rh2DG496200 Rh4AG092700 Rh4BG090600 Rh4CG101100 Rh4DG085000
rosa_wichuraiana	Rw2G038770 Rw4G007630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AccI	GTMKAC	2 cut(s)	63, 1327
AciI	CCGC	2 cut(s)	11, 1148
AclWI	GGATC	3 cut(s)	295, 308, 802
AcsI	RAATTY	2 cut(s)	733, 827
AcuI	CTGAAG	2 cut(s)	606, 1173
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	211, 946
AfiI	CCNNNNNNNGG	3 cut(s)	247, 494, 527
AgsI	TTSAA	4 cut(s)	980, 1049, 1058, 1219
AhlI	ACTAGT	1 cut(s)	58
AjnI	CCWGG	4 cut(s)	535, 775, 1034, 1250
AleI	CACNNNNGTG	1 cut(s)	1112
AluBI	AGCT	8 cut(s)	36, 116, 472, 576, 678, 850, 899, 1137
AluI	AGCT	8 cut(s)	36, 116, 472, 576, 678, 850, 899, 1137
Alw26I	GTCTC	4 cut(s)	170, 423, 965, 1145
AlwI	GGATC	3 cut(s)	295, 308, 802
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	1078
AoxI	GGCC	1 cut(s)	1032
ApeKI	GCWGC	2 cut(s)	274, 469
ApoI	RAATTY	2 cut(s)	733, 827
Asp700I	GAANNNNTTC	2 cut(s)	911, 1267
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	4, 809, 1032
AsuHPI	GGTGA	4 cut(s)	581, 1173, 1223, 1298
AvaI	CYCGRG	1 cut(s)	1078
AvaII	GGWCC	2 cut(s)	4, 809
BamHI	GGATCC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	186, 218
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	261, 481
BccI	CCATC	4 cut(s)	488, 706, 745, 1253
BciT130I	CCWGG	4 cut(s)	537, 777, 1036, 1252
BciVI	GTATCC	2 cut(s)	533, 597
BclI	TGATCA	1 cut(s)	681
BcoDI	GTCTC	4 cut(s)	170, 423, 965, 1145
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	6 cut(s)	59, 117, 165, 294, 761, 1202
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	2 cut(s)	533, 597
BisI	GCNGC	3 cut(s)	11, 275, 470
BlsI	GCNGC	3 cut(s)	12, 276, 471
Bme1390I	CCNGG	4 cut(s)	537, 777, 1036, 1252
Bme18I	GGWCC	2 cut(s)	4, 809
BmeT110I	CYCGRG	1 cut(s)	1078
BmgT120I	GGNCC	3 cut(s)	4, 809, 1032
BmiI	GGNNCC	2 cut(s)	302, 562
BmrFI	CCNGG	4 cut(s)	537, 777, 1036, 1252
BmsI	GCATC	1 cut(s)	1119
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	2 cut(s)	378, 759
BpuEI	CTTGAG	1 cut(s)	955
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 494, 527
Bse1I	ACTGG	4 cut(s)	361, 877, 1012, 1114
BseBI	CCWGG	4 cut(s)	537, 777, 1036, 1252
BseDI	CCNNGG	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	247, 494, 527
BseMII	CTCAG	4 cut(s)	220, 237, 431, 444
BseNI	ACTGG	4 cut(s)	361, 877, 1012, 1114
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	2 cut(s)	261, 481
BseYI	CCCAGC	1 cut(s)	899
BshFI	GGCC	1 cut(s)	1034
BsiHKCI	CYCGRG	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	247, 494, 527
BsmAI	GTCTC	4 cut(s)	170, 423, 965, 1145
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	1 cut(s)	1034
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	1078
Bsp143I	GATC	4 cut(s)	217, 300, 681, 794
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	2 cut(s)	11, 1148
BspANI	GGCC	1 cut(s)	1034
BspCNI	CTCAG	4 cut(s)	219, 236, 430, 445
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	302, 562
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	3 cut(s)	295, 308, 802
BspTNI	GGTCTC	1 cut(s)	423
BsrI	ACTGG	4 cut(s)	361, 877, 1012, 1114
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	217, 300, 681, 794
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	4 cut(s)	537, 777, 1036, 1252
Bst4CI	ACNGT	1 cut(s)	976
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	4 cut(s)	279, 766, 786, 852
BstDEI	CTNAG	6 cut(s)	206, 223, 373, 417, 453, 822
BstDSI	CCRYGG	1 cut(s)	564
BstENI	CCTNNNNNAGG	2 cut(s)	245, 525
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	220, 303, 684, 797
BstMAI	GTCTC	4 cut(s)	170, 423, 965, 1145
BstMBI	GATC	4 cut(s)	217, 300, 681, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	4 cut(s)	537, 777, 1036, 1252
BstNSI	RCATGY	2 cut(s)	768, 864
BstSCI	CCNGG	4 cut(s)	535, 775, 1034, 1250
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	261, 481
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	2 cut(s)	533, 597
BsuRI	GGCC	1 cut(s)	1034
BtgI	CCRYGG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	633, 1107, 1235
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	4 cut(s)	279, 766, 786, 852
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	4, 809, 1032
Csp6I	GTAC	2 cut(s)	210, 945
CviQI	GTAC	2 cut(s)	210, 945
DdeI	CTNAG	6 cut(s)	206, 223, 373, 417, 453, 822
DpnI	GATC	4 cut(s)	219, 302, 683, 796
DpnII	GATC	4 cut(s)	217, 300, 681, 794
DraIII	CACNNNGTG	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	4, 809
Eco57I	CTGAAG	2 cut(s)	606, 1173
Eco88I	CYCGRG	1 cut(s)	1078
EcoNI	CCTNNNNNAGG	2 cut(s)	245, 525
EcoRII	CCWGG	4 cut(s)	535, 775, 1034, 1250
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 815, 847
FaqI	GGGAC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	63, 1327
Fnu4HI	GCNGC	3 cut(s)	11, 275, 470
Fsp4HI	GCNGC	3 cut(s)	11, 275, 470
FspBI	CTAG	6 cut(s)	59, 117, 165, 294, 761, 1202
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	11, 275, 470
GsaI	CCCAGC	1 cut(s)	903
GsuI	CTGGAG	2 cut(s)	378, 759
HaeIII	GGCC	1 cut(s)	1034
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	3 cut(s)	882, 1105, 1328
HindII	GTYRAC	3 cut(s)	882, 1105, 1328
HindIII	AAGCTT	1 cut(s)	1135
HinfI	GANTC	6 cut(s)	65, 380, 818, 980, 1076, 1153
HpaI	GTTAAC	1 cut(s)	1105
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	4 cut(s)	581, 1173, 1223, 1298
Hpy166II	GTNNAC	5 cut(s)	64, 200, 882, 1105, 1328
Hpy188I	TCNGA	3 cut(s)	111, 226, 420
Hpy188III	TCNNGA	6 cut(s)	71, 98, 685, 812, 1080, 1272
Hpy8I	GTNNAC	5 cut(s)	64, 200, 882, 1105, 1328
HpyAV	CCTTC	4 cut(s)	357, 1197, 1312, 1316
HpyCH4III	ACNGT	1 cut(s)	976
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	7 cut(s)	53, 131, 263, 281, 842, 923, 1132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	6 cut(s)	206, 223, 373, 417, 453, 822
HpySE526I	ACGT	1 cut(s)	947
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	681
KspAI	GTTAAC	1 cut(s)	1105
Kzo9I	GATC	4 cut(s)	217, 300, 681, 794
LmnI	GCTCC	4 cut(s)	391, 560, 778, 847
Lsp1109I	GCAGC	2 cut(s)	261, 481
LweI	GCATC	1 cut(s)	1119
MaeI	CTAG	6 cut(s)	59, 117, 165, 294, 761, 1202
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	569, 1246
MalI	GATC	4 cut(s)	219, 302, 683, 796
MboI	GATC	4 cut(s)	217, 300, 681, 794
MboII	GAAGA	4 cut(s)	86, 239, 736, 1163
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	6 cut(s)	733, 827, 868, 893, 1242, 1275
MlyI	GAGTC	3 cut(s)	59, 1070, 1147
MmeI	TCCRAC	1 cut(s)	1069
MnlI	CCTC	7 cut(s)	145, 154, 353, 414, 521, 838, 1219
MroXI	GAANNNNTTC	2 cut(s)	911, 1267
MseI	TTAA	4 cut(s)	147, 474, 962, 1104
MslI	CAYNNNNRTG	2 cut(s)	715, 1112
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	4 cut(s)	537, 777, 1036, 1252
Mva1269I	GAATGC	1 cut(s)	786
MvaI	CCWGG	4 cut(s)	537, 777, 1036, 1252
MwoI	GCNNNNNNNGC	1 cut(s)	770
NcoI	CCATGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	4 cut(s)	217, 300, 681, 794
NlaIV	GGNNCC	2 cut(s)	302, 562
NmuCI	GTSAC	2 cut(s)	569, 1246
NspI	RCATGY	2 cut(s)	768, 864
OliI	CACNNNNGTG	1 cut(s)	1112
PaeI	GCATGC	1 cut(s)	768
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	786
PdmI	GAANNNNTTC	2 cut(s)	911, 1267
PfeI	GAWTC	3 cut(s)	380, 818, 980
PfoI	TCCNGGA	1 cut(s)	775
PkrI	GCNGC	3 cut(s)	12, 276, 471
PleI	GAGTC	3 cut(s)	59, 1070, 1147
PpsI	GAGTC	3 cut(s)	59, 1070, 1147
Psp6I	CCWGG	4 cut(s)	535, 775, 1034, 1250
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	4 cut(s)	535, 775, 1034, 1250
PspN4I	GGNNCC	2 cut(s)	302, 562
PspPI	GGNCC	3 cut(s)	4, 809, 1032
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	2 cut(s)	211, 946
RsaNI	GTAC	2 cut(s)	210, 945
RseI	CAYNNNNRTG	2 cut(s)	715, 1112
SalI	GTCGAC	1 cut(s)	1326
SaqAI	TTAA	4 cut(s)	147, 474, 962, 1104
SatI	GCNGC	3 cut(s)	11, 275, 470
Sau3AI	GATC	4 cut(s)	217, 300, 681, 794
Sau96I	GGNCC	3 cut(s)	4, 809, 1032
SchI	GAGTC	3 cut(s)	59, 1070, 1147
ScrFI	CCNGG	4 cut(s)	537, 777, 1036, 1252
SfaNI	GCATC	1 cut(s)	1119
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	4, 809
SmiMI	CAYNNNNRTG	2 cut(s)	715, 1112
SmlI	CTYRAG	1 cut(s)	934
SmoI	CTYRAG	1 cut(s)	934
SpeI	ACTAGT	1 cut(s)	58
SphI	GCATGC	1 cut(s)	768
Sse9I	AATT	6 cut(s)	733, 827, 868, 893, 1242, 1275
SsiI	CCGC	2 cut(s)	11, 1148
SspI	AATATT	2 cut(s)	587, 1042
SspMI	CTAG	6 cut(s)	59, 117, 165, 294, 761, 1202
StyD4I	CCNGG	4 cut(s)	535, 775, 1034, 1250
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	976
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	2 cut(s)	674, 1327
TasI	AATT	6 cut(s)	733, 827, 868, 893, 1242, 1275
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	380, 818, 980
Tru1I	TTAA	4 cut(s)	147, 474, 962, 1104
Tru9I	TTAA	4 cut(s)	147, 474, 962, 1104
TscAI	CASTG	3 cut(s)	633, 1114, 1242
TseFI	GTSAC	2 cut(s)	569, 1246
TseI	GCWGC	2 cut(s)	274, 469
Tsp45I	GTSAC	2 cut(s)	569, 1246
TspDTI	ATGAA	5 cut(s)	86, 597, 831, 908, 1221
TspGWI	ACGGA	2 cut(s)	404, 1238
TspRI	CASTG	3 cut(s)	633, 1114, 1242
VpaK11BI	GGWCC	2 cut(s)	4, 809
XagI	CCTNNNNNAGG	2 cut(s)	245, 525
XapI	RAATTY	2 cut(s)	733, 827
XceI	RCATGY	2 cut(s)	768, 864
XmiI	GTMKAC	2 cut(s)	63, 1327
XmnI	GAANNNNTTC	2 cut(s)	911, 1267
XspI	CTAG	6 cut(s)	59, 117, 165, 294, 761, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.