RLG00000009292

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001430
Physical Location & Seq
Forward (+)
50298393 .. 50310904
12512 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009292

Sequence Viewer

Length: 1608 bp
ATGGGAAAGAAATCTGCATCGTCTTTATCCTCGTCGTCGTCGCCGCCTTCGTGGTGGTGGTGGAGATATCGATCGGCACTCATCATAATCTCATTCGTGGCTCTCACATGGCTGCTGTTCGACCACCAATCCCTCACCTTGGAGGACCAGGTAGTGGTGTCCAGGTTGAATAAGGAGCTGAAAATATTGAAGAATCAGTTAGAAAATGTGAAGAAGCATATAAGAGGCTGGAGCATTGTTGAAGAGGATATGGATGATCCTCTCAATGTAGAACGAAGAAATGCGGTTAAGGATGCTATGGTTCATGCCTGGACTTGTTACGAGAAGTATGCGTGGGGTCGTGATGAACTCCAGCCACAGACGAAAGACGCTGCTGACACTTTCGGTGGTCTAGGGGCAACTCTAGTGGATTCTCTTGATACATTGTATATAATGGGTCTTGACCAGCAATTCCAAAGAGCTAGAGAGTGGGTTGCAAGCTCATTGAATTTCAACAAGAATTACGAGGCTAGTGTTTTTGAGACAACCATAAGAGTTATAGGCGGACTTCTTAGCGCATATGATCTGTCAGATGACAAACTCTTCCTTGACAAGGCTAGAGATATTGCAGATAGGTTGCTGCCTGCATGGAATACACCTTCCGGAATCCCATACAACATGATCAACTTGATGTATGGTAATGCCCATAACCCTAGGTGGGCAGGGGGAAAAAGTATTCTTGCAGATGCTGCTTCAGAACAGCTTGAATTTATTGCGCTATCTCAACGGACAAAAGACCCCAAGTACCAGCAGAAGGTGGAATATGTCATCAAAGAGTTTCATAAAATCTTCCCCGCAGATGGATTGCTTCCCATATATCTTGATCCTCACACTGGAACAATGTCATACTCAAAAGTTACATTCGGTGCCTTGGGTGATAGTTTTTATGAATATCTACTCAAGGCTTGGATACAAGGAAACAAAACAGAAGCTGTAAAACATTACAGAGAAATGTGGGAGACATCAATGAAAGGTTTAAAAAGCTTGATTCGGAGGACAACACGATCCTCATTTGCATATATATGTGAAAAGCTTGGAAGCTCACTAACTGACAAGATGGATGAATTAGCTTGCTTTGCTCCTGGCATGCTGGCCTTAGGATCTTCTGGCTATGACCCTGGCGAAGCTGAAAAGATTTTATCCCTTGCTGAAGAGCTTGCATGGACATGTTACAATTTCTATCAGACAACGCCTACAAAATTGGCTGGGGAGAACTATAACTTTCCCGCTGGACAGGACATGACCGTGGGAACATCATGGAACATTTTAAGGCCTGAAACTGTTGAGTCACTTTTCTACCTATGGCGGTTAACTGGGAACAAAACTTACCAAGAATGGGGTTGGAACATTTTCCAAGCATTTGAAAATAACTCTCGTACAGATACAGGGTACAGTGGACTTAAAGATGTAAGTAAAGGTGATAAAGACAATACGATGCAGAGCTTCTTCCTCGCAGAAACACTGAAGTATCTCTACCTCCTCTTTTCACCTCCGTCATTCATCTCTTTGGACGAATGGGTGTTTAACACAGAAGCCCACCCACTAAGGATTGTGACTCCAACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141
Pfam Domains
Protein Families
Glyco_hydro_47

Protein Analysis

536

Amino Acids

61.07

Weight (kDa)

5.57

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 99 - 530 2.3e-161 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 905
AccB7I CCANNNNNTGG 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 641
AciI CCGC 6 cut(s) 44, 284, 543, 834, 1266, 1345
AclWI GGATC 4 cut(s) 251, 857, 1038, 1147
AcsI RAATTY 2 cut(s) 487, 746
AcuI CTGAAG 3 cut(s) 717, 1209, 1523
AfaI GTAC 3 cut(s) 785, 1417, 1430
AfiI CCNNNNNNNGG 8 cut(s) 139, 154, 592, 697, 793, 839, 872, 1375
AflIII ACRYGT 1 cut(s) 1205
AgsI TTSAA 7 cut(s) 169, 190, 242, 487, 493, 746, 1403
AjnI CCWGG 5 cut(s) 147, 161, 308, 1120, 1156
Alw26I GTCTC 2 cut(s) 515, 992
AlwI GGATC 4 cut(s) 251, 857, 1038, 1147
AlwNI CAGNNNCTG 2 cut(s) 728, 971
Aor13HI TCCGGA 1 cut(s) 641
AoxI GGCC 2 cut(s) 1131, 1310
ApeKI GCWGC 4 cut(s) 112, 371, 619, 728
ApoI RAATTY 2 cut(s) 487, 746
Asp700I GAANNNNTTC 1 cut(s) 1388
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 2 cut(s) 557, 757
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 4 cut(s) 127, 926, 1469, 1518
AvaII GGWCC 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 1135
BaeI ACNNNNGTAYC 2 cut(s) 1490, 1523
BanI GGYRCC 1 cut(s) 905
BarI GAAGNNNNNNTAC 2 cut(s) 1496, 1528
BbvI GCAGC 4 cut(s) 99, 358, 606, 715
BccI CCATC 2 cut(s) 833, 1090
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 5 cut(s) 149, 163, 310, 1122, 1158
BciVI GTATCC 1 cut(s) 942
BclI TGATCA 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 515, 992
BfaI CTAG 6 cut(s) 392, 404, 462, 510, 597, 693
BfuI GTATCC 1 cut(s) 942
BisI GCNGC 5 cut(s) 44, 113, 372, 620, 729
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 5 cut(s) 45, 114, 373, 621, 730
Bme1390I CCNGG 5 cut(s) 149, 163, 310, 1122, 1158
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 907
BmrFI CCNGG 5 cut(s) 149, 163, 310, 1122, 1158
BmrI ACTGGG 2 cut(s) 1362, 1597
BmsI GCATC 4 cut(s) 26, 283, 715, 1464
BmuI ACTGGG 2 cut(s) 1362, 1597
BpmI CTGGAG 2 cut(s) 250, 335
BpuEI CTTGAG 1 cut(s) 923
Bsa29I ATCGAT 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 70
BsaJI CCNNGG 5 cut(s) 138, 692, 909, 1156, 1284
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 8 cut(s) 139, 154, 592, 697, 793, 839, 872, 1375
Bse1I ACTGG 3 cut(s) 877, 1357, 1603
Bse21I CCTNAGG 1 cut(s) 1135
Bse8I GATNNNNATC 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 641
BseBI CCWGG 5 cut(s) 149, 163, 310, 1122, 1158
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 5 cut(s) 138, 692, 909, 1156, 1284
BseGI GGATG 3 cut(s) 259, 298, 1105
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 8 cut(s) 139, 154, 592, 697, 793, 839, 872, 1375
BseNI ACTGG 3 cut(s) 877, 1357, 1603
BseRI GAGGAG 1 cut(s) 1508
BseXI GCAGC 4 cut(s) 99, 358, 606, 715
BseYI CCCAGC 1 cut(s) 1244
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 1133, 1312
BshNI GGYRCC 1 cut(s) 905
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 642
BslI CCNNNNNNNGG 8 cut(s) 139, 154, 592, 697, 793, 839, 872, 1375
BsmAI GTCTC 2 cut(s) 515, 992
BsnI GGCC 2 cut(s) 1133, 1312
Bsp13I TCCGGA 1 cut(s) 641
Bsp143I GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
BspACI CCGC 6 cut(s) 44, 284, 543, 834, 1266, 1345
BspANI GGCC 2 cut(s) 1133, 1312
BspDI ATCGAT 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 641
BspLI GGNNCC 1 cut(s) 907
BspPI GGATC 4 cut(s) 251, 857, 1038, 1147
BspQI GCTCTTC 1 cut(s) 1185
BspT107I GGYRCC 1 cut(s) 905
BsrI ACTGG 3 cut(s) 877, 1357, 1603
BssECI CCNNGG 5 cut(s) 138, 692, 909, 1156, 1284
BssMI GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
BssT1I CCWWGG 3 cut(s) 138, 692, 909
Bst2UI CCWGG 5 cut(s) 149, 163, 310, 1122, 1158
Bst4CI ACNGT 3 cut(s) 1285, 1321, 1433
Bst6I CTCTTC 3 cut(s) 237, 587, 1185
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 6 cut(s) 478, 624, 1111, 1127, 1131, 1197
BstDEI CTNAG 3 cut(s) 551, 1135, 1583
BstDSI CCRYGG 1 cut(s) 1284
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 259, 298, 1105
BstHHI GCGC 2 cut(s) 557, 757
BstKTI GATC 7 cut(s) 74, 259, 565, 663, 865, 1046, 1142
BstMAI GTCTC 2 cut(s) 515, 992
BstMBI GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 728, 1115
BstNI CCWGG 5 cut(s) 149, 163, 310, 1122, 1158
BstNSI RCATGY 2 cut(s) 1129, 1209
BstSCI CCNGG 5 cut(s) 147, 161, 308, 1120, 1156
BstV1I GCAGC 4 cut(s) 99, 358, 606, 715
BstX2I RGATCY 1 cut(s) 1139
BstYI RGATCY 1 cut(s) 1139
Bsu15I ATCGAT 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 1135
BsuI GTATCC 1 cut(s) 942
BsuRI GGCC 2 cut(s) 1133, 1312
BsuTUI ATCGAT 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 1284
BtsCI GGATG 3 cut(s) 259, 298, 1105
BtsIMutI CAGTG 3 cut(s) 870, 1438, 1499
Cac8I GCNNGC 6 cut(s) 478, 624, 1111, 1127, 1131, 1197
CaiI CAGNNNCTG 2 cut(s) 728, 971
CfoI GCGC 2 cut(s) 557, 757
Cfr13I GGNCC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 377
CsiI ACCWGGT 1 cut(s) 147
Csp6I GTAC 3 cut(s) 784, 1416, 1429
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 9 cut(s) 108, 305, 627, 658, 1126, 1200, 1206, 1279, 1296
CviQI GTAC 3 cut(s) 784, 1416, 1429
DdeI CTNAG 3 cut(s) 551, 1135, 1583
DpnI GATC 7 cut(s) 73, 258, 564, 662, 864, 1045, 1141
DpnII GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
DraI TTTAAA 1 cut(s) 1017
Eam1104I CTCTTC 3 cut(s) 237, 587, 1185
EarI CTCTTC 3 cut(s) 237, 587, 1185
EciI GGCGGA 1 cut(s) 558
Eco130I CCWWGG 3 cut(s) 138, 692, 909
Eco147I AGGCCT 1 cut(s) 1312
Eco32I GATATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 3 cut(s) 717, 1209, 1523
Eco81I CCTNAGG 1 cut(s) 1135
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRII CCWGG 5 cut(s) 147, 161, 308, 1120, 1156
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 3 cut(s) 138, 692, 909
ErhI CCWWGG 3 cut(s) 138, 692, 909
FaeI CATG 9 cut(s) 111, 308, 630, 661, 1129, 1203, 1209, 1282, 1299
FatI CATG 9 cut(s) 107, 304, 626, 657, 1125, 1199, 1205, 1278, 1295
FauI CCCGC 2 cut(s) 841, 1273
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 5 cut(s) 44, 113, 372, 620, 729
FokI GGATG 3 cut(s) 266, 305, 1112
Fsp4HI GCNGC 5 cut(s) 44, 113, 372, 620, 729
FspBI CTAG 6 cut(s) 392, 404, 462, 510, 597, 693
GlaI GCGC 2 cut(s) 556, 756
GluI GCNGC 5 cut(s) 44, 113, 372, 620, 729
GsaI CCCAGC 1 cut(s) 1248
GsuI CTGGAG 2 cut(s) 250, 335
HaeIII GGCC 2 cut(s) 1133, 1312
HapII CCGG 1 cut(s) 642
HgaI GACGC 1 cut(s) 377
HhaI GCGC 2 cut(s) 557, 757
Hin1II CATG 9 cut(s) 111, 308, 630, 661, 1129, 1203, 1209, 1282, 1299
Hin6I GCGC 2 cut(s) 555, 755
HinP1I GCGC 2 cut(s) 555, 755
HincII GTYRAC 1 cut(s) 1350
HindII GTYRAC 1 cut(s) 1350
HindIII AAGCTT 2 cut(s) 1021, 1070
HinfI GANTC 6 cut(s) 193, 410, 645, 1027, 1325, 1594
HpaI GTTAAC 1 cut(s) 1350
HpaII CCGG 1 cut(s) 642
HphI GGTGA 4 cut(s) 127, 926, 1469, 1518
Hpy166II GTNNAC 2 cut(s) 1350, 1436
Hpy188I TCNGA 4 cut(s) 571, 736, 1032, 1224
Hpy188III TCNNGA 5 cut(s) 341, 416, 440, 642, 860
Hpy8I GTNNAC 2 cut(s) 1350, 1436
Hpy99I CGWCG 3 cut(s) 37, 40, 43
HpyAV CCTTC 3 cut(s) 57, 648, 787
HpyCH4III ACNGT 3 cut(s) 1285, 1321, 1433
HpyCH4V TGCA 8 cut(s) 17, 476, 608, 626, 722, 1055, 1199, 1477
HpyF10VI GCNNNNNNNGC 2 cut(s) 728, 1115
HpyF3I CTNAG 3 cut(s) 551, 1135, 1583
Hsp92II CATG 9 cut(s) 111, 308, 630, 661, 1129, 1203, 1209, 1282, 1299
HspAI GCGC 2 cut(s) 555, 755
Kpn2I TCCGGA 1 cut(s) 641
Ksp22I TGATCA 1 cut(s) 660
KspAI GTTAAC 1 cut(s) 1350
Kzo9I GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
LguI GCTCTTC 1 cut(s) 1185
LmnI GCTCC 3 cut(s) 175, 231, 1123
Lsp1109I GCAGC 4 cut(s) 99, 358, 606, 715
LweI GCATC 4 cut(s) 26, 283, 715, 1464
MabI ACCWGGT 1 cut(s) 147
MaeI CTAG 6 cut(s) 392, 404, 462, 510, 597, 693
MaeIII GTNAC 5 cut(s) 317, 895, 1208, 1326, 1591
MalI GATC 7 cut(s) 73, 258, 564, 662, 864, 1045, 1141
MboI GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
MboII GAAGA 9 cut(s) 202, 223, 254, 288, 574, 820, 1134, 1202, 1477
MflI RGATCY 1 cut(s) 1139
MluCI AATT 7 cut(s) 449, 487, 499, 746, 1103, 1213, 1238
MlyI GAGTC 2 cut(s) 1334, 1588
MmeI TCCRAC 1 cut(s) 1361
MroI TCCGGA 1 cut(s) 641
MroXI GAANNNNTTC 1 cut(s) 1388
MseI TTAA 6 cut(s) 288, 1016, 1307, 1349, 1440, 1563
MslI CAYNNNNRTG 3 cut(s) 1060, 1204, 1283
MspA1I CMGCKG 1 cut(s) 1268
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 5 cut(s) 149, 163, 310, 1122, 1158
MvaI CCWGG 5 cut(s) 149, 163, 310, 1122, 1158
MwoI GCNNNNNNNGC 2 cut(s) 728, 1115
NdeI CATATG 1 cut(s) 559
NdeII GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
NlaIII CATG 9 cut(s) 111, 308, 630, 661, 1129, 1203, 1209, 1282, 1299
NlaIV GGNNCC 1 cut(s) 907
NmuCI GTSAC 2 cut(s) 1326, 1591
NspI RCATGY 2 cut(s) 1129, 1209
PaeI GCATGC 1 cut(s) 1129
PceI AGGCCT 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 1185
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 1388
PfeI GAWTC 4 cut(s) 193, 410, 645, 1027
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 5 cut(s) 45, 114, 373, 621, 730
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 2 cut(s) 1333, 1588
PpsI GAGTC 2 cut(s) 1333, 1588
PscI ACATGT 1 cut(s) 1205
Psp6I CCWGG 5 cut(s) 147, 161, 308, 1120, 1156
PspFI CCCAGC 1 cut(s) 1244
PspGI CCWGG 5 cut(s) 147, 161, 308, 1120, 1156
PspN4I GGNNCC 1 cut(s) 907
PspPI GGNCC 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 1349, 1381
PstNI CAGNNNCTG 2 cut(s) 728, 971
PsuI RGATCY 1 cut(s) 1139
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 3 cut(s) 785, 1417, 1430
RsaNI GTAC 3 cut(s) 784, 1416, 1429
RseI CAYNNNNRTG 3 cut(s) 1060, 1204, 1283
SapI GCTCTTC 1 cut(s) 1185
SaqAI TTAA 6 cut(s) 288, 1016, 1307, 1349, 1440, 1563
SatI GCNGC 5 cut(s) 44, 113, 372, 620, 729
Sau3AI GATC 7 cut(s) 71, 256, 562, 660, 862, 1043, 1139
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 1334, 1588
ScrFI CCNGG 5 cut(s) 149, 163, 310, 1122, 1158
SexAI ACCWGGT 1 cut(s) 147
SfaNI GCATC 4 cut(s) 26, 283, 715, 1464
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 1060, 1204, 1283
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SphI GCATGC 1 cut(s) 1129
Sse9I AATT 7 cut(s) 449, 487, 499, 746, 1103, 1213, 1238
SseBI AGGCCT 1 cut(s) 1312
SsiI CCGC 6 cut(s) 44, 284, 543, 834, 1266, 1345
SspI AATATT 1 cut(s) 186
SspMI CTAG 6 cut(s) 392, 404, 462, 510, 597, 693
StuI AGGCCT 1 cut(s) 1312
StyD4I CCNGG 5 cut(s) 147, 161, 308, 1120, 1156
StyI CCWWGG 3 cut(s) 138, 692, 909
TaaI ACNGT 3 cut(s) 1285, 1321, 1433
TaqI TCGA 2 cut(s) 70, 120
TasI AATT 7 cut(s) 449, 487, 499, 746, 1103, 1213, 1238
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 4 cut(s) 193, 410, 645, 1027
Tru1I TTAA 6 cut(s) 288, 1016, 1307, 1349, 1440, 1563
Tru9I TTAA 6 cut(s) 288, 1016, 1307, 1349, 1440, 1563
TscAI CASTG 3 cut(s) 877, 1438, 1506
TseFI GTSAC 2 cut(s) 1326, 1591
TseI GCWGC 4 cut(s) 112, 371, 619, 728
Tsp45I GTSAC 2 cut(s) 1326, 1591
TspDTI ATGAA 7 cut(s) 293, 360, 809, 942, 1022, 1116, 1528
TspGWI ACGGA 2 cut(s) 781, 1521
TspRI CASTG 3 cut(s) 877, 1438, 1506
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 2 cut(s) 487, 746
XceI RCATGY 2 cut(s) 1129, 1209
XmaJI CCTAGG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 1388
XspI CTAG 6 cut(s) 392, 404, 462, 510, 597, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.