Rorug04G0014700

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001430
Physical Location & Seq
Forward (+)
2342678 .. 2342893
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0014700.1

Sequence Viewer

Length: 216 bp
ATGTCAAAAGGCGTTTTTGCCGGCCGGGACCATCAGGTGGTGAATGTGAGTGGAGCGAACGCGGTGGAGCTCCGGTCGAAGCTACCTGAAGGCGACAAAGAAGCTCTGCTCGAAGCTACCTCTCCGATCGAAGCTCCGGTTGGACCACCGGCGAGAAAAGCAGCTCTTGACGTGGGTGCCCAGAGCATTTTCGGCTTCGGATTGCAGTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141
Pfam Domains
Protein Families
Glyco_hydro_47

Protein Analysis

71

Amino Acids

7.27

Weight (kDa)

5.66

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 37
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 37
AjiI CACGTC 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 6 cut(s) 70, 82, 104, 116, 134, 164
AluI AGCT 6 cut(s) 70, 82, 104, 116, 134, 164
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 28, 143
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 2 cut(s) 28, 143
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 39
BcnI CCSGG 1 cut(s) 26
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 28, 143
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 28, 143
BmiI GGNNCC 2 cut(s) 29, 178
BmrFI CCNGG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 72, 136
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 2 cut(s) 20, 148
BseLI CCNNNNNNNGG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 3 cut(s) 25, 77, 129
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 3 cut(s) 25, 77, 129
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 5 cut(s) 21, 25, 73, 137, 149
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 72, 181
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 24
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 29, 178
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 20, 148
BssAI RCCGGY 2 cut(s) 20, 148
BssMI GATC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 22
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 3 cut(s) 25, 77, 129
BstMWI GCNNNNNNNGC 2 cut(s) 158, 192
BstSCI CCNGG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 173
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 24
BtrI CACGTC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 22
Cfr10I RCCGGY 2 cut(s) 20, 148
Cfr13I GGNCC 2 cut(s) 28, 143
CviJI RGCY 8 cut(s) 24, 70, 82, 104, 116, 134, 164, 195
CviKI_1 RGCY 8 cut(s) 24, 70, 82, 104, 116, 134, 164, 195
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 28, 143
Eco52I CGGCCG 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 72
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 24
HapII CCGG 5 cut(s) 21, 25, 73, 137, 149
HpaII CCGG 5 cut(s) 21, 25, 73, 137, 149
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 126, 200
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 192
HpySE526I ACGT 1 cut(s) 171
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 4 cut(s) 53, 67, 75, 139
LpnPI CCDG 8 cut(s) 20, 34, 38, 86, 99, 150, 162, 194
Lsp1109I GCAGC 1 cut(s) 173
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 72, 181
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 130
MroNI GCCGGC 1 cut(s) 20
MspI CCGG 5 cut(s) 21, 25, 73, 137, 149
MspR9I CCNGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 158, 192
NaeI GCCGGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 26
NdeII GATC 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 29, 178
PdiI GCCGGC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 29, 178
PspPI GGNCC 2 cut(s) 28, 143
PvuI CGATCG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 28, 143
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 72, 181
SgrAI CRCCGGYG 1 cut(s) 148
SinI GGWCC 2 cut(s) 28, 143
SsiI CCGC 1 cut(s) 62
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 77, 111, 129
TseI GCWGC 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 28, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.