Rroxscaffold_5G00344140

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001430
Physical Location & Seq
Reverse (-)
14110004 .. 14117237
7234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344140.1

Sequence Viewer

Length: 1473 bp
ATGGGAAAGAAATCTGCATCGTCTTTATCGTCGTCGTCGTCGCCGCCTTCGTGGTGGTGGTGGAGATATCGATCGGCACTCGTCATAATCTCATTCGTGGCTCTCACATGGCTGCTCTTCGACCACCAATCCCTCACCTTGGAGGACCAGTTAGAAAATGTGAAGAAGCATATAAGAGGCTGGAGCATTGTTGAAGAGGATATGGATGATCCTCTCAATGTAGAACGAAGAAATGCGGTTAAGGATGCTATGGTTCATGCCTGGACTTGTTACGAGAAGTATGCGTGGGGTCGTGATGAACTCCAGTACAATGCACCATCATCGTGTGGTCGCAATGTTATAGGTAAATATGGTGTAATTAGTTTTAGTCCTGGTGGTTTTGGTGGATCTGAATCAAGTGAATTTAACAAATTGACTCTCGATTCTAAACAGCCGCAGACGAAAGACGCTGCTGACACTTTCGGTGGTCTAGGGGCAACTCTAGTGGATTCTCTTGATACATTGTATATAATGGGTCTTGACCAGCAATTCCAAAGAGCTAGAGAAGTTATAGGCGGACTTCTTAGCGCATATGATCTGTCAGATGACAAACTCTTCCTTGACAAGGCTAGAGATATTGCAGATAGGTTGCTGCCTGCATGGAATACACCTTCTGGAATCCCATACAACATGATCAACTTAATGTATGGTAATGCCCATAACCCTAGGTGGGCAGGGGGAAAAAGTATTCTTGCAGATGCTGCTTCAGAACAGCTTGAATTTATTGCTCTATCTCAACGGACGAAAGACCCCAAGTACCAGCAGAAGGTGGAATATGTCATCAAAGAGTTTCATAAAATCTTCCCTGCTGATGGATTGCTTCCCATATATCTTGATCCTCACACTGGAACAATGTCATACTCAAAAGTTACATTCGGTGCCTTGGGTGATAGAGAAATGTGGGAGACATCAATGAAAGGTTTGAAAAGCTTGATTCGGAGGACAACACCATCCTCATTTGCATATATATGTGAAAAGCTTGGAAGCTCACTAACTGACAAGATGGATGAATTAGCTTGCTTTGCTCCTGGCATGCTGGCTTTAGGATCTTCTGGCTATGACCCTGGCGAAGCTGAAAAGATTTTATCCCTTGCTGAAGAGGACATGACCGTGGGAACATCATGGAACATCTTAAGGCCTGAAACTGTTGAGTCACTTTTCTACCTATGGCGGTTAACTGGGAACAAAACTTACCAAGAATGGGGTTGGAACATTTTCCAAGCATTTGAAAATAACTCTCGTACAGATACAGGATATAGTGGACTTAAAGATGTAAGTAAAGGTGATAAAGACAATATGATGCAGAGCTTCTTCCTTGCAGAAACACTGAAGTATCTCTACCTCCTCTTTTCACCTCCGTCATTCATCTCTTTGGACGAATGGGTGTTTAACACAGAAGCCCACCCACTAAGGATTGTGACTCAAACCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141
Pfam Domains
Protein Families
Glyco_hydro_47

Protein Analysis

490

Amino Acids

55.26

Weight (kDa)

5.17

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 83 - 184 1.2e-14 Glycosyl hydrolase family 47
Glyco_hydro_47 PF01532 183 - 310 9.4e-35 Glycosyl hydrolase family 47
Glyco_hydro_47 PF01532 311 - 380 2.8e-07 Glycosyl hydrolase family 47
Glyco_hydro_47 PF01532 381 - 485 1.5e-49 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 917
AciI CCGC 5 cut(s) 44, 236, 434, 555, 1210
AclWI GGATC 4 cut(s) 203, 394, 869, 1093
AcsI RAATTY 2 cut(s) 401, 758
AcuI CTGAAG 3 cut(s) 729, 1155, 1388
AfaI GTAC 3 cut(s) 308, 797, 1282
AfiI CCNNNNNNNGG 7 cut(s) 139, 604, 709, 805, 851, 884, 1240
AflII CTTAAG 1 cut(s) 1171
AgsI TTSAA 4 cut(s) 194, 758, 964, 1268
AjnI CCWGG 4 cut(s) 260, 370, 1066, 1102
AluBI AGCT 8 cut(s) 539, 754, 969, 1018, 1026, 1055, 1112, 1347
AluI AGCT 8 cut(s) 539, 754, 969, 1018, 1026, 1055, 1112, 1347
Alw26I GTCTC 1 cut(s) 938
AlwI GGATC 4 cut(s) 203, 394, 869, 1093
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 1 cut(s) 1175
ApeKI GCWGC 4 cut(s) 112, 449, 631, 740
ApoI RAATTY 2 cut(s) 401, 758
Asp700I GAANNNNTTC 1 cut(s) 1253
AspA2I CCTAGG 1 cut(s) 704
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 4 cut(s) 127, 938, 1334, 1383
AvaII GGWCC 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 704
BaeI ACNNNNGTAYC 2 cut(s) 1355, 1388
BanI GGYRCC 1 cut(s) 917
BarI GAAGNNNNNNTAC 2 cut(s) 1361, 1393
BbvI GCAGC 4 cut(s) 99, 436, 618, 727
BccI CCATC 4 cut(s) 325, 845, 997, 1036
BcgI CGANNNNNNTGC 4 cut(s) 263, 297, 303, 337
BciT130I CCWGG 4 cut(s) 262, 372, 1068, 1104
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 938
BfaI CTAG 5 cut(s) 470, 482, 540, 609, 705
BfrI CTTAAG 1 cut(s) 1171
BisI GCNGC 6 cut(s) 44, 113, 434, 450, 632, 741
BlnI CCTAGG 1 cut(s) 704
BlsI GCNGC 6 cut(s) 45, 114, 435, 451, 633, 742
Bme1390I CCNGG 4 cut(s) 262, 372, 1068, 1104
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 919
BmrFI CCNGG 4 cut(s) 262, 372, 1068, 1104
BmrI ACTGGG 2 cut(s) 1227, 1462
BmsI GCATC 4 cut(s) 26, 235, 727, 1329
BmuI ACTGGG 2 cut(s) 1227, 1462
BpmI CTGGAG 2 cut(s) 202, 287
Bsa29I ATCGAT 1 cut(s) 70
BsaBI GATNNNNATC 2 cut(s) 70, 391
BsaJI CCNNGG 5 cut(s) 138, 704, 921, 1102, 1149
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 7 cut(s) 139, 604, 709, 805, 851, 884, 1240
Bse1I ACTGG 5 cut(s) 148, 304, 889, 1222, 1468
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 2 cut(s) 70, 391
BseBI CCWGG 4 cut(s) 262, 372, 1068, 1104
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 5 cut(s) 138, 704, 921, 1102, 1149
BseGI GGATG 4 cut(s) 211, 250, 989, 1051
BseJI GATNNNNATC 2 cut(s) 70, 391
BseLI CCNNNNNNNGG 7 cut(s) 139, 604, 709, 805, 851, 884, 1240
BseMI GCAATG 1 cut(s) 340
BseNI ACTGG 5 cut(s) 148, 304, 889, 1222, 1468
BseRI GAGGAG 1 cut(s) 1373
BseXI GCAGC 4 cut(s) 99, 436, 618, 727
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 1177
BshNI GGYRCC 1 cut(s) 917
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 74
BslI CCNNNNNNNGG 7 cut(s) 139, 604, 709, 805, 851, 884, 1240
BsmAI GTCTC 1 cut(s) 938
BsnI GGCC 1 cut(s) 1177
Bsp143I GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
BspACI CCGC 5 cut(s) 44, 236, 434, 555, 1210
BspANI GGCC 1 cut(s) 1177
BspDI ATCGAT 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 919
BspPI GGATC 4 cut(s) 203, 394, 869, 1093
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 917
BspTI CTTAAG 1 cut(s) 1171
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 5 cut(s) 148, 304, 889, 1222, 1468
BssECI CCNNGG 5 cut(s) 138, 704, 921, 1102, 1149
BssMI GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
BssT1I CCWWGG 3 cut(s) 138, 704, 921
Bst2UI CCWGG 4 cut(s) 262, 372, 1068, 1104
Bst4CI ACNGT 2 cut(s) 1150, 1186
Bst6I CTCTTC 4 cut(s) 122, 189, 599, 1131
BstAFI CTTAAG 1 cut(s) 1171
BstAPI GCANNNNNTGC 1 cut(s) 740
BstC8I GCNNGC 4 cut(s) 636, 1057, 1073, 1077
BstDEI CTNAG 2 cut(s) 563, 1448
BstDSI CCRYGG 1 cut(s) 1149
BstENI CCTNNNNNAGG 1 cut(s) 602
BstF5I GGATG 4 cut(s) 211, 250, 989, 1051
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 7 cut(s) 74, 211, 389, 577, 675, 877, 1088
BstMAI GTCTC 1 cut(s) 938
BstMBI GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 740, 1061
BstNI CCWGG 4 cut(s) 262, 372, 1068, 1104
BstNSI RCATGY 1 cut(s) 1075
BstSCI CCNGG 4 cut(s) 260, 370, 1066, 1102
BstV1I GCAGC 4 cut(s) 99, 436, 618, 727
BstX2I RGATCY 2 cut(s) 386, 1085
BstYI RGATCY 2 cut(s) 386, 1085
Bsu15I ATCGAT 1 cut(s) 70
BsuRI GGCC 1 cut(s) 1177
BsuTUI ATCGAT 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 1149
BtsCI GGATG 4 cut(s) 211, 250, 989, 1051
BtsIMutI CAGTG 2 cut(s) 882, 1364
Cac8I GCNNGC 4 cut(s) 636, 1057, 1073, 1077
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 307, 796, 1281
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 7 cut(s) 108, 257, 639, 670, 1072, 1144, 1161
CviQI GTAC 3 cut(s) 307, 796, 1281
DdeI CTNAG 2 cut(s) 563, 1448
DpnI GATC 7 cut(s) 73, 210, 388, 576, 674, 876, 1087
DpnII GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
Eam1104I CTCTTC 4 cut(s) 122, 189, 599, 1131
EarI CTCTTC 4 cut(s) 122, 189, 599, 1131
EciI GGCGGA 1 cut(s) 570
Eco130I CCWWGG 3 cut(s) 138, 704, 921
Eco147I AGGCCT 1 cut(s) 1177
Eco32I GATATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 3 cut(s) 729, 1155, 1388
EcoNI CCTNNNNNAGG 1 cut(s) 602
EcoRII CCWGG 4 cut(s) 260, 370, 1066, 1102
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 3 cut(s) 138, 704, 921
ErhI CCWWGG 3 cut(s) 138, 704, 921
FaeI CATG 7 cut(s) 111, 260, 642, 673, 1075, 1147, 1164
FatI CATG 7 cut(s) 107, 256, 638, 669, 1071, 1143, 1160
FauNDI CATATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 6 cut(s) 44, 113, 434, 450, 632, 741
FokI GGATG 4 cut(s) 218, 257, 976, 1058
Fsp4HI GCNGC 6 cut(s) 44, 113, 434, 450, 632, 741
FspBI CTAG 5 cut(s) 470, 482, 540, 609, 705
GlaI GCGC 1 cut(s) 568
GluI GCNGC 6 cut(s) 44, 113, 434, 450, 632, 741
GsuI CTGGAG 2 cut(s) 202, 287
HaeIII GGCC 1 cut(s) 1177
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 569
Hin1II CATG 7 cut(s) 111, 260, 642, 673, 1075, 1147, 1164
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HincII GTYRAC 1 cut(s) 1215
HindII GTYRAC 1 cut(s) 1215
HindIII AAGCTT 2 cut(s) 967, 1016
HinfI GANTC 8 cut(s) 392, 415, 422, 488, 657, 973, 1190, 1459
HpaI GTTAAC 1 cut(s) 1215
HphI GGTGA 4 cut(s) 127, 938, 1334, 1383
Hpy166II GTNNAC 2 cut(s) 1215, 1301
Hpy188I TCNGA 4 cut(s) 391, 583, 748, 978
Hpy188III TCNNGA 6 cut(s) 293, 419, 494, 518, 654, 872
Hpy8I GTNNAC 2 cut(s) 1215, 1301
Hpy99I CGWCG 4 cut(s) 34, 37, 40, 43
HpyAV CCTTC 3 cut(s) 57, 660, 799
HpyCH4III ACNGT 2 cut(s) 1150, 1186
HpyCH4V TGCA 8 cut(s) 17, 314, 620, 638, 734, 1001, 1342, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 1061
HpyF3I CTNAG 2 cut(s) 563, 1448
Hsp92II CATG 7 cut(s) 111, 260, 642, 673, 1075, 1147, 1164
HspAI GCGC 1 cut(s) 567
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 1215
Kzo9I GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 183, 1069
Lsp1109I GCAGC 4 cut(s) 99, 436, 618, 727
LweI GCATC 4 cut(s) 26, 235, 727, 1329
MaeI CTAG 5 cut(s) 470, 482, 540, 609, 705
MaeIII GTNAC 4 cut(s) 269, 907, 1191, 1456
MalI GATC 7 cut(s) 73, 210, 388, 576, 674, 876, 1087
MboI GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
MboII GAAGA 9 cut(s) 109, 175, 206, 240, 586, 832, 1080, 1148, 1342
MflI RGATCY 2 cut(s) 386, 1085
MluCI AATT 6 cut(s) 357, 401, 410, 527, 758, 1049
MlyI GAGTC 3 cut(s) 409, 1199, 1453
MmeI TCCRAC 1 cut(s) 1226
MroXI GAANNNNTTC 1 cut(s) 1253
MseI TTAA 7 cut(s) 240, 405, 680, 1172, 1214, 1305, 1428
MslI CAYNNNNRTG 3 cut(s) 322, 1006, 1148
MspCI CTTAAG 1 cut(s) 1171
MspR9I CCNGG 4 cut(s) 262, 372, 1068, 1104
MvaI CCWGG 4 cut(s) 262, 372, 1068, 1104
MwoI GCNNNNNNNGC 2 cut(s) 740, 1061
NdeI CATATG 1 cut(s) 571
NdeII GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
NlaIII CATG 7 cut(s) 111, 260, 642, 673, 1075, 1147, 1164
NlaIV GGNNCC 1 cut(s) 919
NmuCI GTSAC 2 cut(s) 1191, 1456
NspI RCATGY 1 cut(s) 1075
PaeI GCATGC 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 1177
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 26, 35, 47
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 5 cut(s) 392, 422, 488, 657, 973
PkrI GCNGC 6 cut(s) 45, 114, 435, 451, 633, 742
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 3 cut(s) 409, 1198, 1453
PpsI GAGTC 3 cut(s) 409, 1198, 1453
Psp6I CCWGG 4 cut(s) 260, 370, 1066, 1102
PspGI CCWGG 4 cut(s) 260, 370, 1066, 1102
PspN4I GGNNCC 1 cut(s) 919
PspPI GGNCC 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 1214, 1246
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 2 cut(s) 386, 1085
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 3 cut(s) 308, 797, 1282
RsaNI GTAC 3 cut(s) 307, 796, 1281
RseI CAYNNNNRTG 3 cut(s) 322, 1006, 1148
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 7 cut(s) 240, 405, 680, 1172, 1214, 1305, 1428
SatI GCNGC 6 cut(s) 44, 113, 434, 450, 632, 741
Sau3AI GATC 7 cut(s) 71, 208, 386, 574, 672, 874, 1085
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 3 cut(s) 409, 1199, 1453
ScrFI CCNGG 4 cut(s) 262, 372, 1068, 1104
SfaNI GCATC 4 cut(s) 26, 235, 727, 1329
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 322, 1006, 1148
SmlI CTYRAG 1 cut(s) 1171
SmoI CTYRAG 1 cut(s) 1171
SphI GCATGC 1 cut(s) 1075
Sse9I AATT 6 cut(s) 357, 401, 410, 527, 758, 1049
SseBI AGGCCT 1 cut(s) 1177
SsiI CCGC 5 cut(s) 44, 236, 434, 555, 1210
SspMI CTAG 5 cut(s) 470, 482, 540, 609, 705
StuI AGGCCT 1 cut(s) 1177
StyD4I CCNGG 4 cut(s) 260, 370, 1066, 1102
StyI CCWWGG 3 cut(s) 138, 704, 921
TaaI ACNGT 2 cut(s) 1150, 1186
TaqI TCGA 3 cut(s) 70, 120, 420
TasI AATT 6 cut(s) 357, 401, 410, 527, 758, 1049
TatI WGTACW 1 cut(s) 306
TauI GCSGC 2 cut(s) 46, 436
TfiI GAWTC 5 cut(s) 392, 422, 488, 657, 973
Tru1I TTAA 7 cut(s) 240, 405, 680, 1172, 1214, 1305, 1428
Tru9I TTAA 7 cut(s) 240, 405, 680, 1172, 1214, 1305, 1428
TscAI CASTG 2 cut(s) 889, 1371
TseFI GTSAC 2 cut(s) 1191, 1456
TseI GCWGC 4 cut(s) 112, 449, 631, 740
Tsp45I GTSAC 2 cut(s) 1191, 1456
TspDTI ATGAA 6 cut(s) 245, 312, 821, 968, 1062, 1393
TspGWI ACGGA 2 cut(s) 793, 1386
TspRI CASTG 2 cut(s) 889, 1371
Vha464I CTTAAG 1 cut(s) 1171
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 602
XapI RAATTY 2 cut(s) 401, 758
XceI RCATGY 1 cut(s) 1075
XmaJI CCTAGG 1 cut(s) 704
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 5 cut(s) 470, 482, 540, 609, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.