Prupe.3G019700_v2.0.a1

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
1446231 .. 1455938
9708 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G019700.5

Sequence Viewer

Length: 1584 bp
ATGCAAACCATATACGGCAAGGAAGAAGTTTCTAAGTTAAATGAACAATTGCACCATTTGAAAAGTTTGGTGGAAGACTCGGAAAATGTGCAAGGTGATGCAACTAAAAAGAACATATTCAAGGGCAGGGATGGTGAGAAAGAGGTTGTTCCAGATGACCCGATTGACATTCAAAGACAAGAAAAAGTGAAAGAAGCTATGATTCATGCATGGAGTTCATATGAGAAGTATGCATGGGGCCAAGATGAACTTCAGCCACAATCAAAGAATGGTGTTAATGGCTTTGGTGGTCTTGGAGCAACAATAGTAGACTCTCTTGATACGTTGTATATAATGGGTCTTCACGAGCAGTTCCAGAAAGCTAGAGAGTGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAGGCTAGTGTTTTTGAGACAACCATAAGAGTTGTAGGTGGCCTTCTCAGTGCATATGATCTTTCAGAAGATAAAGTTTTCCTTGATAAGGCTAGAGATATTGCAGACAGATTGCTGCCTGCATGGGATTCACCTAGTGGAATCCCTTACAACATTATCAACTTGGCACATGGAAGACCGCACAATCCTTCTTGGACTGGAGGTGAAAGTATCTTGGCAGATTCCGGCACAGAGCAGGTGGAGTTTATTGCTCTTTCTGAGAGGACAGGAGACCCGAAATATCAGCAGAAGGCTGAGAATGTTATAGTGCAGCTTAACAAAACTTTCCCTGATGATGGCTTGCTTCCTATTTATATTGACCCTGAAAGAGGAACGTCAGCGTACTCCGTTATAACCTTTGGCGCTATGGGTGACAGCTTCTATGAATATTTGCTCAAAGTTTGGATACAGGGGAATAGAACTACAGCTGTAAAGCCTTATAGAGATATGTGGGAGAAATCAATGAACGGTCTGTTGAGCTTGATCCGGAAAACAACACCATCATCTTTTACATATATATGCGAGAAGAATGGGAGAACTCTGACAAATAAGATGGACGAACTAGCGTGCTTTGCTCCAGGAATGCTGGCTTTAGGATCATCTGGTTATGGTCCTGACGACTCTAAGAAATTCTTGTCACTTGCAGAAGAGCTTGCTTGGACATGCTATAATTTCTACCAGTCTACACCAACAAAATTAGCTGGAGAGAACTATTTCTTTCGTGCTGGCGAGGACTTGAGTGTGGGTACGTCATGGAATATATTGAGACCAGAGACAATTGAATCACTTTTTTACCTCTGGCGTTTGACTGGCAACAAGACATACCAAGAGTGGGGCTGGAATATATTTCAAGCATTTGAAAAGAACTCCCGCATAGAGTCAGGATATGTTGGACTGAAAGATGTTAACACTGGTGACAAAGACAATATGATGCAAAGCTTCTTTCTTGCGGAGACTCTCAAATATCTCTATCTTCTTTTTTCACCCTCCTCAGTCATCTCACTAGATGAATGGGTTTTCAACACGGAAGCTCACCCGCTAAGAATTGTGGCAAGGCATGATGAAGCAAATTCTGGAAGAGCAAATGGGGATGATAGACCAAAGATTAGATTGCGTGGCAGGAAGGAGGGCCGAGATTAA

Protein Analysis

528

Amino Acids

59.7

Weight (kDa)

5.12

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 797
AarI CACCTGC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 631
AccI GTMKAC 2 cut(s) 309, 1127
AccIII TCCGGA 1 cut(s) 930
AciI CCGC 4 cut(s) 584, 1315, 1394, 1481
AclWI GGATC 2 cut(s) 922, 1048
AcsI RAATTY 2 cut(s) 1073, 1513
AcuI CTGAAG 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 2 cut(s) 788, 1192
AfiI CCNNNNNNNGG 4 cut(s) 493, 740, 773, 1276
AgsI TTSAA 7 cut(s) 61, 121, 173, 1226, 1295, 1304, 1465
AjnI CCWGG 1 cut(s) 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
Alw26I GTCTC 5 cut(s) 416, 669, 1204, 1211, 1391
AlwI GGATC 2 cut(s) 922, 1048
Aor13HI TCCGGA 1 cut(s) 930
AoxI GGCC 3 cut(s) 238, 445, 1573
ApeKI GCWGC 2 cut(s) 520, 715
ApoI RAATTY 2 cut(s) 1073, 1513
Asp700I GAANNNNTTC 2 cut(s) 116, 1157
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 238, 1055, 1573
AsuHPI GGTGA 8 cut(s) 107, 146, 528, 620, 827, 1370, 1419, 1469
AvaII GGWCC 1 cut(s) 1055
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 3 cut(s) 81, 332, 586
BbvI GCAGC 2 cut(s) 507, 727
BccI CCATC 4 cut(s) 125, 734, 952, 991
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 1023
BciVI GTATCC 1 cut(s) 843
BcoDI GTCTC 5 cut(s) 416, 669, 1204, 1211, 1391
BfaI CTAG 6 cut(s) 363, 411, 498, 540, 1007, 1448
BfmI CTRYAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 1 cut(s) 843
BisI GCNGC 2 cut(s) 521, 716
BlsI GCNGC 2 cut(s) 522, 717
Bme1390I CCNGG 1 cut(s) 1023
Bme18I GGWCC 1 cut(s) 1055
BmgT120I GGNCC 3 cut(s) 238, 1055, 1573
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 1023
BmsI GCATC 2 cut(s) 88, 1365
BpiI GAAGAC 3 cut(s) 81, 332, 586
BpmI CTGGAG 3 cut(s) 624, 1005, 1167
BpuEI CTTGAG 1 cut(s) 1201
BsaI GGTCTC 2 cut(s) 669, 1204
BsaWI WCCGGW 1 cut(s) 930
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 740, 773, 1276
Bse1I ACTGG 4 cut(s) 607, 1123, 1258, 1360
BseAI TCCGGA 1 cut(s) 930
BseBI CCWGG 1 cut(s) 1023
BseGI GGATG 2 cut(s) 136, 1540
BseLI CCNNNNNNNGG 4 cut(s) 493, 740, 773, 1276
BseMII CTCAG 4 cut(s) 466, 654, 690, 1449
BseNI ACTGG 4 cut(s) 607, 1123, 1258, 1360
BseRI GAGGAG 1 cut(s) 1423
BseXI GCAGC 2 cut(s) 507, 727
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 3 cut(s) 240, 447, 1575
BsiSI CCGG 2 cut(s) 630, 931
BslI CCNNNNNNNGG 4 cut(s) 493, 740, 773, 1276
BsmAI GTCTC 5 cut(s) 416, 669, 1204, 1211, 1391
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 3 cut(s) 240, 447, 1575
Bso31I GGTCTC 2 cut(s) 669, 1204
Bsp13I TCCGGA 1 cut(s) 930
Bsp143I GATC 3 cut(s) 463, 927, 1040
BspACI CCGC 4 cut(s) 584, 1315, 1394, 1481
BspANI GGCC 3 cut(s) 240, 447, 1575
BspCNI CTCAG 4 cut(s) 465, 655, 691, 1448
BspEI TCCGGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 239
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 2 cut(s) 922, 1048
BspQI GCTCTTC 2 cut(s) 1086, 1516
BspTNI GGTCTC 2 cut(s) 669, 1204
BsrI ACTGG 4 cut(s) 607, 1123, 1258, 1360
BssMI GATC 3 cut(s) 463, 927, 1040
BssSI CACGAG 1 cut(s) 344
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 1023
Bst4CI ACNGT 1 cut(s) 914
Bst6I CTCTTC 2 cut(s) 1086, 1516
BstC8I GCNNGC 6 cut(s) 525, 746, 1012, 1032, 1098, 1171
BstDEI CTNAG 7 cut(s) 33, 452, 663, 699, 1068, 1435, 1484
BstENI CCTNNNNNAGG 2 cut(s) 491, 771
BstF5I GGATG 2 cut(s) 136, 1540
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 3 cut(s) 466, 930, 1043
BstMAI GTCTC 5 cut(s) 416, 669, 1204, 1211, 1391
BstMBI GATC 3 cut(s) 463, 927, 1040
BstMWI GCNNNNNNNGC 1 cut(s) 1016
BstNI CCWGG 1 cut(s) 1023
BstNSI RCATGY 1 cut(s) 1110
BstSCI CCNGG 1 cut(s) 1021
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 2 cut(s) 507, 727
BstV2I GAAGAC 3 cut(s) 81, 332, 586
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 3 cut(s) 240, 447, 1575
BtsCI GGATG 2 cut(s) 136, 1540
BtsIMutI CAGTG 2 cut(s) 460, 1353
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 6 cut(s) 525, 746, 1012, 1032, 1098, 1171
CfoI GCGC 1 cut(s) 809
Cfr13I GGNCC 3 cut(s) 238, 1055, 1573
Csp6I GTAC 2 cut(s) 787, 1191
CviAII CATG 8 cut(s) 206, 210, 234, 528, 575, 1107, 1197, 1502
CviQI GTAC 2 cut(s) 787, 1191
DdeI CTNAG 7 cut(s) 33, 452, 663, 699, 1068, 1435, 1484
DpnI GATC 3 cut(s) 465, 929, 1042
DpnII GATC 3 cut(s) 463, 927, 1040
DraIII CACNNNGTG 1 cut(s) 542
Eam1104I CTCTTC 2 cut(s) 1086, 1516
EarI CTCTTC 2 cut(s) 1086, 1516
Eco31I GGTCTC 2 cut(s) 669, 1204
Eco47I GGWCC 1 cut(s) 1055
Eco57I CTGAAG 1 cut(s) 236
EcoNI CCTNNNNNAGG 2 cut(s) 491, 771
EcoRII CCWGG 1 cut(s) 1021
EcoT22I ATGCAT 2 cut(s) 211, 235
FaeI CATG 8 cut(s) 209, 213, 237, 531, 578, 1110, 1200, 1505
FalI AAGNNNNNCTT 6 cut(s) 234, 266, 471, 503, 1061, 1093
FatI CATG 8 cut(s) 205, 209, 233, 527, 574, 1106, 1196, 1501
FauI CCCGC 2 cut(s) 1322, 1488
FauNDI CATATG 2 cut(s) 220, 460
FblI GTMKAC 2 cut(s) 309, 1127
Fnu4HI GCNGC 2 cut(s) 521, 716
FokI GGATG 2 cut(s) 143, 1547
Fsp4HI GCNGC 2 cut(s) 521, 716
FspBI CTAG 6 cut(s) 363, 411, 498, 540, 1007, 1448
GlaI GCGC 1 cut(s) 808
GluI GCNGC 2 cut(s) 521, 716
GsuI CTGGAG 3 cut(s) 624, 1005, 1167
HaeII RGCGCY 1 cut(s) 810
HaeIII GGCC 3 cut(s) 240, 447, 1575
HapII CCGG 2 cut(s) 630, 931
HhaI GCGC 1 cut(s) 809
Hin1II CATG 8 cut(s) 209, 213, 237, 531, 578, 1110, 1200, 1505
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 1351
HindII GTYRAC 1 cut(s) 1351
HindIII AAGCTT 1 cut(s) 1381
HpaI GTTAAC 1 cut(s) 1351
HpaII CCGG 2 cut(s) 630, 931
HphI GGTGA 8 cut(s) 107, 146, 528, 620, 827, 1370, 1419, 1469
Hpy166II GTNNAC 3 cut(s) 310, 1128, 1351
Hpy188I TCNGA 4 cut(s) 82, 472, 664, 987
Hpy188III TCNNGA 8 cut(s) 152, 317, 344, 355, 931, 1058, 1326, 1518
Hpy8I GTNNAC 3 cut(s) 310, 1128, 1351
HpyAV CCTTC 4 cut(s) 458, 603, 688, 1561
HpyCH4III ACNGT 1 cut(s) 914
HpyCH4IV ACGT 3 cut(s) 323, 779, 1193
HpyF10VI GCNNNNNNNGC 1 cut(s) 1016
HpyF3I CTNAG 7 cut(s) 33, 452, 663, 699, 1068, 1435, 1484
HpySE526I ACGT 3 cut(s) 323, 779, 1193
Hsp92II CATG 8 cut(s) 209, 213, 237, 531, 578, 1110, 1200, 1505
HspAI GCGC 1 cut(s) 807
Kpn2I TCCGGA 1 cut(s) 930
KspAI GTTAAC 1 cut(s) 1351
Kzo9I GATC 3 cut(s) 463, 927, 1040
LguI GCTCTTC 2 cut(s) 1086, 1516
LmnI GCTCC 2 cut(s) 296, 1024
Lsp1109I GCAGC 2 cut(s) 507, 727
LweI GCATC 2 cut(s) 88, 1365
MaeI CTAG 6 cut(s) 363, 411, 498, 540, 1007, 1448
MaeII ACGT 3 cut(s) 323, 779, 1193
MaeIII GTNAC 3 cut(s) 815, 1080, 1358
MalI GATC 3 cut(s) 465, 929, 1042
MboI GATC 3 cut(s) 463, 927, 1040
MboII GAAGA 9 cut(s) 35, 86, 332, 485, 591, 982, 1103, 1409, 1533
MfeI CAATTG 2 cut(s) 47, 1221
MluCI AATT 7 cut(s) 47, 1073, 1114, 1139, 1221, 1488, 1513
MlyI GAGTC 5 cut(s) 71, 305, 1058, 1331, 1393
MmeI TCCRAC 1 cut(s) 1315
Mph1103I ATGCAT 2 cut(s) 211, 235
MroI TCCGGA 1 cut(s) 930
MroXI GAANNNNTTC 2 cut(s) 116, 1157
MseI TTAA 6 cut(s) 38, 276, 393, 720, 1350, 1582
MslI CAYNNNNRTG 1 cut(s) 961
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 2 cut(s) 630, 931
MspR9I CCNGG 1 cut(s) 1023
MunI CAATTG 2 cut(s) 47, 1221
Mva1269I GAATGC 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 1023
MwoI GCNNNNNNNGC 1 cut(s) 1016
NdeI CATATG 2 cut(s) 220, 460
NdeII GATC 3 cut(s) 463, 927, 1040
NlaIII CATG 8 cut(s) 209, 213, 237, 531, 578, 1110, 1200, 1505
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 3 cut(s) 815, 1080, 1358
NsiI ATGCAT 2 cut(s) 211, 235
NspI RCATGY 1 cut(s) 1110
PaqCI CACCTGC 1 cut(s) 631
PciSI GCTCTTC 2 cut(s) 1086, 1516
PctI GAATGC 1 cut(s) 1032
PdmI GAANNNNTTC 2 cut(s) 116, 1157
PfeI GAWTC 5 cut(s) 202, 533, 546, 626, 1226
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 2 cut(s) 522, 717
PleI GAGTC 5 cut(s) 71, 305, 1058, 1330, 1393
PpsI GAGTC 5 cut(s) 71, 305, 1058, 1330, 1393
PsiI TTATAA 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 1021
PspGI CCWGG 1 cut(s) 1021
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 3 cut(s) 238, 1055, 1573
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 2 cut(s) 788, 1192
RsaNI GTAC 2 cut(s) 787, 1191
RseI CAYNNNNRTG 1 cut(s) 961
SapI GCTCTTC 2 cut(s) 1086, 1516
SaqAI TTAA 6 cut(s) 38, 276, 393, 720, 1350, 1582
SatI GCNGC 2 cut(s) 521, 716
Sau3AI GATC 3 cut(s) 463, 927, 1040
Sau96I GGNCC 3 cut(s) 238, 1055, 1573
SchI GAGTC 5 cut(s) 71, 305, 1058, 1331, 1393
ScrFI CCNGG 1 cut(s) 1023
SfaNI GCATC 2 cut(s) 88, 1365
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 1055
SmiMI CAYNNNNRTG 1 cut(s) 961
SmlI CTYRAG 1 cut(s) 1180
SmoI CTYRAG 1 cut(s) 1180
Sse9I AATT 7 cut(s) 47, 1073, 1114, 1139, 1221, 1488, 1513
SsiI CCGC 4 cut(s) 584, 1315, 1394, 1481
SspI AATATT 1 cut(s) 833
SspMI CTAG 6 cut(s) 363, 411, 498, 540, 1007, 1448
StyD4I CCNGG 1 cut(s) 1021
TaaI ACNGT 1 cut(s) 914
TaiI ACGT 3 cut(s) 326, 782, 1196
TasI AATT 7 cut(s) 47, 1073, 1114, 1139, 1221, 1488, 1513
TfiI GAWTC 5 cut(s) 202, 533, 546, 626, 1226
Tru1I TTAA 6 cut(s) 38, 276, 393, 720, 1350, 1582
Tru9I TTAA 6 cut(s) 38, 276, 393, 720, 1350, 1582
TscAI CASTG 2 cut(s) 460, 1360
TseFI GTSAC 3 cut(s) 815, 1080, 1358
TseI GCWGC 2 cut(s) 520, 715
Tsp45I GTSAC 3 cut(s) 815, 1080, 1358
TspDTI ATGAA 8 cut(s) 57, 194, 207, 261, 843, 923, 1467, 1521
TspGWI ACGGA 2 cut(s) 781, 1484
TspRI CASTG 2 cut(s) 460, 1360
VpaK11BI GGWCC 1 cut(s) 1055
XagI CCTNNNNNAGG 2 cut(s) 491, 771
XapI RAATTY 2 cut(s) 1073, 1513
XceI RCATGY 1 cut(s) 1110
XmiI GTMKAC 2 cut(s) 309, 1127
XmnI GAANNNNTTC 2 cut(s) 116, 1157
XspI CTAG 6 cut(s) 363, 411, 498, 540, 1007, 1448
Zsp2I ATGCAT 2 cut(s) 211, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.