Prupe.1G073800_v2.0.a1

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001430
Physical Location & Seq
Reverse (-)
5286394 .. 5293764
7371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G073800.7

Sequence Viewer

Length: 1671 bp
ATGGGAAAAAAATCGTTATCTTCTTCATCGCAATCGTGGTGGTGGAGAGGGTGGAGATATCTTCACCCGCAGCATAACCTGAGGAGCCCGCAGCTGTTGACACTCTTCATTATCTCCTTTGTTGCTCTCACATGGCTGCTCTCTGGCCTCGAATCTCTCAGTGTAGAGCACCAGCTAGAGAATGTGAAGAAGAATATAAGAAGTTGGAGCATTGTCGAGGAGGAGGATGATCCTCTCAATGTTGAACGAAGAAGAGCAGTTAAAGAGGCTATGATTCATGCTTGGACTTGTTACGAGATGTACGCATGGGGTCGTGATGAACTCCAGCCACAAACAAGAGATGGTGTTGATAGTTTTGGCGGTCTAGGAGCAACTCTAGTGGATTCTCTTGATACCTTGTACATAATGGGTCTTGACGAGCAATTCCAAAGAGCTAGAGAGTGGGTTGCAAAGTCGTTGAATTTCAACAAGAATTACGAGGCTAGTGTTTTTGAGACAACCATAAGAGTTATAGGTGGACTTCTTAGCGCATATGATCTCTCTGATGACAAAGTGTTCCTTGAAAAGGCTAGAGATATTGCAGATAGGTTGCTGCCTGCGTGGAATACACCCTCAGGAATCCCCTATAACATAATAAACTTGAGATATGGGGATGCCCGTAACCCTCGGTGGACAGGGGGAAAAAGTATTCTGGCAGATGCTGGTTCAGAGCAGCTTGAATTTATTGCTCTATCTCAGAGGACAAATGATCCTAAGTACCAGCAGAAGGTGGAATATGTCATTGAAGAGCTTCATAAAACCTTCCCTGCTGATGGATTGCTTCCCATATATATTGATCCTCACACTGGAATTACCTCATACTCAAAAATTTCCTTTGGTGCCATGGGTGATAGCTTTTATGAATATCTACTCAAGGCTTGGATACAAGGGAACAAAACTGAATCTGTAACGCACTACAGAGAAATGTGGGAGACATCAATGAAAGGTCTGAAAAGCTTGATTCGGAAGACAACACCATCCTCATATGCATATATATGTGAGAAGACTGGAAGCTCGCTGTCCGATAAGATGGATGAATTAGCTTGCTTTGCTCCTGGAATGTTGGCTTTAGGATCTACTGGCTATGGCCCTGATGAAGCTGAAAAGTTTTTATCCCTTGCTGAAGAGCTTGCATGGACATGTTATAACTTTTACCAGACAACACCTACAAAATTGGCTGGAGAGAACTATTACTTCCCTGCTGGACAGATTTTGCAGGACATGACCGTTGGAACATCATGGAGCATTTTGAGGCCGGAGACGGTGGAGTCACTTTTTTACCTATGGCGTTTAACTGGGAACAAAACTTACCAAGAATGGGGTTGGAATATTTTCCAAGCATTTGAAAAGAACTCTCGAGTAGATACAGGATATAGTGGACTTAAAGATGTGAGTTCAGGTGAGAAAGACAATATGATGCAGAGCTTCTTCCTCGCAGAAACGCTGAAGTATCTCTATCTCCTCTTTTCACCTCCATCGTTTATCTCTTTGGATGAATGGGTTTTTAACACAGAAGCCCACCCTCTAAGGATCGCGACTCGACATGCTAATGGAGAGACTTATAGTACAATTGGACAAGATAGATTACAAGAAAGGTTCCATGGTAGGAAAGGTCGGTCAGGATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141
Pfam Domains
Protein Families
Glyco_hydro_47

Protein Analysis

557

Amino Acids

63.62

Weight (kDa)

5.56

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1185
AasI GACNNNNNNGTC 1 cut(s) 1306
AccB1I GGYRCC 1 cut(s) 878
AccII CGCG 1 cut(s) 1574
AciI CCGC 3 cut(s) 68, 89, 360
AclWI GGATC 6 cut(s) 224, 743, 830, 1120, 1577, 1669
AcsI RAATTY 3 cut(s) 460, 719, 867
AcuI CTGAAG 2 cut(s) 1182, 1505
AfaI GTAC 4 cut(s) 302, 401, 758, 1606
AfiI CCNNNNNNNGG 5 cut(s) 565, 766, 812, 845, 1357
AflIII ACRYGT 1 cut(s) 1178
AgsI TTSAA 7 cut(s) 245, 460, 466, 563, 719, 785, 1385
AjnI CCWGG 1 cut(s) 1093
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 4 cut(s) 488, 965, 1292, 1589
AlwI GGATC 6 cut(s) 224, 743, 830, 1120, 1577, 1669
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 1395
AoxI GGCC 3 cut(s) 145, 1126, 1292
ApeKI GCWGC 5 cut(s) 70, 91, 136, 592, 712
ApoI RAATTY 3 cut(s) 460, 719, 867
Asp700I GAANNNNTTC 2 cut(s) 789, 1370
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 1127
AsuHPI GGTGA 4 cut(s) 56, 899, 1451, 1500
AvaI CYCGRG 1 cut(s) 1395
AxyI CCTNAGG 2 cut(s) 80, 613
BanI GGYRCC 1 cut(s) 878
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 1013, 1049
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 5 cut(s) 82, 103, 123, 579, 724
BccI CCATC 5 cut(s) 335, 806, 1024, 1063, 1522
BciT130I CCWGG 1 cut(s) 1095
BciVI GTATCC 1 cut(s) 915
BcoDI GTCTC 4 cut(s) 488, 965, 1292, 1589
BfaI CTAG 6 cut(s) 176, 365, 377, 435, 483, 570
BfmI CTRYAG 1 cut(s) 955
BfuI GTATCC 1 cut(s) 915
BisI GCNGC 5 cut(s) 71, 92, 137, 593, 713
BlsI GCNGC 5 cut(s) 72, 93, 138, 594, 714
Bme1390I CCNGG 1 cut(s) 1095
BmeT110I CYCGRG 1 cut(s) 1395
BmgT120I GGNCC 1 cut(s) 1127
BmiI GGNNCC 3 cut(s) 86, 880, 1637
BmrFI CCNGG 1 cut(s) 1095
BmrI ACTGGG 1 cut(s) 1344
BmsI GCATC 3 cut(s) 643, 688, 1446
BmuI ACTGGG 1 cut(s) 1344
BpiI GAAGAC 2 cut(s) 1013, 1049
BpmI CTGGAG 2 cut(s) 308, 1239
BpuEI CTTGAG 2 cut(s) 661, 896
BsaJI CCNNGG 3 cut(s) 665, 882, 1639
Bsc4I CCNNNNNNNGG 5 cut(s) 565, 766, 812, 845, 1357
Bse1I ACTGG 4 cut(s) 850, 1051, 1123, 1339
Bse21I CCTNAGG 2 cut(s) 80, 613
BseBI CCWGG 1 cut(s) 1095
BseDI CCNNGG 3 cut(s) 665, 882, 1639
BseGI GGATG 5 cut(s) 232, 658, 1016, 1078, 1537
BseLI CCNNNNNNNGG 5 cut(s) 565, 766, 812, 845, 1357
BseMII CTCAG 4 cut(s) 71, 172, 627, 749
BseNI ACTGG 4 cut(s) 850, 1051, 1123, 1339
BseRI GAGGAG 4 cut(s) 97, 233, 236, 1490
BseXI GCAGC 5 cut(s) 82, 103, 123, 579, 724
Bsh1236I CGCG 1 cut(s) 1574
BshFI GGCC 3 cut(s) 147, 1128, 1294
BshNI GGYRCC 1 cut(s) 878
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 1395
BsiSI CCGG 1 cut(s) 1295
BslI CCNNNNNNNGG 5 cut(s) 565, 766, 812, 845, 1357
BsmAI GTCTC 4 cut(s) 488, 965, 1292, 1589
BsmBI CGTCTC 1 cut(s) 1292
BsnI GGCC 3 cut(s) 147, 1128, 1294
BsoBI CYCGRG 1 cut(s) 1395
Bsp1286I GDGCHC 2 cut(s) 89, 171
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
Bsp19I CCATGG 2 cut(s) 882, 1639
Bsp68I TCGCGA 1 cut(s) 1574
BspACI CCGC 3 cut(s) 68, 89, 360
BspANI GGCC 3 cut(s) 147, 1128, 1294
BspCNI CTCAG 4 cut(s) 72, 171, 626, 748
BspFNI CGCG 1 cut(s) 1574
BspLI GGNNCC 3 cut(s) 86, 880, 1637
BspPI GGATC 6 cut(s) 224, 743, 830, 1120, 1577, 1669
BspQI GCTCTTC 3 cut(s) 247, 780, 1158
BspT107I GGYRCC 1 cut(s) 878
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 4 cut(s) 850, 1051, 1123, 1339
BssECI CCNNGG 3 cut(s) 665, 882, 1639
BssMI GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
BssT1I CCWWGG 2 cut(s) 882, 1639
Bst2UI CCWGG 1 cut(s) 1095
Bst4CI ACNGT 2 cut(s) 1267, 1303
Bst6I CTCTTC 4 cut(s) 110, 247, 780, 1158
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 89, 597, 1055, 1084, 1170
BstDEI CTNAG 7 cut(s) 80, 158, 524, 613, 735, 753, 1565
BstDSI CCRYGG 2 cut(s) 882, 1639
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 5 cut(s) 232, 658, 1016, 1078, 1537
BstFNI CGCG 1 cut(s) 1574
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 7 cut(s) 232, 538, 751, 838, 1115, 1572, 1664
BstMAI GTCTC 4 cut(s) 488, 965, 1292, 1589
BstMBI GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
BstMWI GCNNNNNNNGC 1 cut(s) 1088
BstNI CCWGG 1 cut(s) 1095
BstNSI RCATGY 2 cut(s) 1182, 1586
BstSCI CCNGG 1 cut(s) 1093
BstSFI CTRYAG 1 cut(s) 955
BstUI CGCG 1 cut(s) 1574
BstV1I GCAGC 5 cut(s) 82, 103, 123, 579, 724
BstV2I GAAGAC 2 cut(s) 1013, 1049
BstX2I RGATCY 2 cut(s) 1112, 1661
BstYI RGATCY 2 cut(s) 1112, 1661
Bsu36I CCTNAGG 2 cut(s) 80, 613
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 3 cut(s) 147, 1128, 1294
BtgI CCRYGG 2 cut(s) 882, 1639
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 5 cut(s) 232, 658, 1016, 1078, 1537
BtsIMutI CAGTG 2 cut(s) 166, 843
BtuMI TCGCGA 1 cut(s) 1574
Cac8I GCNNGC 5 cut(s) 89, 597, 1055, 1084, 1170
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 1127
Csp6I GTAC 4 cut(s) 301, 400, 757, 1605
CspCI CAANNNNNGTGG 4 cut(s) 20, 55, 360, 395
CviQI GTAC 4 cut(s) 301, 400, 757, 1605
DdeI CTNAG 7 cut(s) 80, 158, 524, 613, 735, 753, 1565
DpnI GATC 7 cut(s) 231, 537, 750, 837, 1114, 1571, 1663
DpnII GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
DrdI GACNNNNNNGTC 1 cut(s) 1306
DseDI GACNNNNNNGTC 1 cut(s) 1306
Eam1104I CTCTTC 4 cut(s) 110, 247, 780, 1158
EarI CTCTTC 4 cut(s) 110, 247, 780, 1158
Eco130I CCWWGG 2 cut(s) 882, 1639
Eco24I GRGCYC 1 cut(s) 89
Eco32I GATATC 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 1182, 1505
Eco81I CCTNAGG 2 cut(s) 80, 613
Eco88I CYCGRG 1 cut(s) 1395
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 1093
EcoRV GATATC 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 882, 1639
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 2 cut(s) 882, 1639
Esp3I CGTCTC 1 cut(s) 1292
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FauI CCCGC 2 cut(s) 75, 96
FauNDI CATATG 2 cut(s) 532, 1024
Fnu4HI GCNGC 5 cut(s) 71, 92, 137, 593, 713
FokI GGATG 5 cut(s) 239, 665, 1003, 1085, 1544
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 5 cut(s) 71, 92, 137, 593, 713
FspBI CTAG 6 cut(s) 176, 365, 377, 435, 483, 570
GlaI GCGC 1 cut(s) 529
GluI GCNGC 5 cut(s) 71, 92, 137, 593, 713
GsuI CTGGAG 2 cut(s) 308, 1239
HaeIII GGCC 3 cut(s) 147, 1128, 1294
HapII CCGG 1 cut(s) 1295
HhaI GCGC 1 cut(s) 530
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 994
HinfI GANTC 8 cut(s) 152, 274, 383, 618, 941, 1000, 1307, 1576
HpaII CCGG 1 cut(s) 1295
HphI GGTGA 4 cut(s) 56, 899, 1451, 1500
Hpy166II GTNNAC 4 cut(s) 99, 518, 672, 1418
Hpy188I TCNGA 6 cut(s) 544, 709, 738, 990, 1005, 1063
Hpy188III TCNNGA 7 cut(s) 314, 389, 413, 615, 1395, 1573, 1659
Hpy8I GTNNAC 4 cut(s) 99, 518, 672, 1418
HpyAV CCTTC 2 cut(s) 760, 811
HpyCH4III ACNGT 2 cut(s) 1267, 1303
HpyCH4V TGCA 6 cut(s) 449, 581, 1028, 1172, 1255, 1459
HpyF10VI GCNNNNNNNGC 1 cut(s) 1088
HpyF3I CTNAG 7 cut(s) 80, 158, 524, 613, 735, 753, 1565
HspAI GCGC 1 cut(s) 528
Kzo9I GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
LguI GCTCTTC 3 cut(s) 247, 780, 1158
LmnI GCTCC 5 cut(s) 84, 207, 368, 1096, 1281
Lsp1109I GCAGC 5 cut(s) 82, 103, 123, 579, 724
LweI GCATC 3 cut(s) 643, 688, 1446
MaeI CTAG 6 cut(s) 176, 365, 377, 435, 483, 570
MaeIII GTNAC 4 cut(s) 290, 659, 946, 1308
MalI GATC 7 cut(s) 231, 537, 750, 837, 1114, 1571, 1663
MboI GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
MfeI CAATTG 1 cut(s) 1608
MflI RGATCY 2 cut(s) 1112, 1661
MhlI GDGCHC 2 cut(s) 89, 171
MlyI GAGTC 2 cut(s) 1316, 1570
MmeI TCCRAC 3 cut(s) 185, 1249, 1343
Mph1103I ATGCAT 1 cut(s) 1030
MroXI GAANNNNTTC 2 cut(s) 789, 1370
MseI TTAA 4 cut(s) 261, 1331, 1422, 1545
MslI CAYNNNNRTG 3 cut(s) 1033, 1177, 1587
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 1295
MspR9I CCNGG 1 cut(s) 1095
MunI CAATTG 1 cut(s) 1608
MvaI CCWGG 1 cut(s) 1095
MvnI CGCG 1 cut(s) 1574
MwoI GCNNNNNNNGC 1 cut(s) 1088
NcoI CCATGG 2 cut(s) 882, 1639
NdeI CATATG 2 cut(s) 532, 1024
NdeII GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
NlaIV GGNNCC 3 cut(s) 86, 880, 1637
NmuCI GTSAC 1 cut(s) 1308
NruI TCGCGA 1 cut(s) 1574
NsiI ATGCAT 1 cut(s) 1030
NspI RCATGY 2 cut(s) 1182, 1586
PaeR7I CTCGAG 1 cut(s) 1395
PciI ACATGT 1 cut(s) 1178
PciSI GCTCTTC 3 cut(s) 247, 780, 1158
PdmI GAANNNNTTC 2 cut(s) 789, 1370
PfeI GAWTC 6 cut(s) 152, 274, 383, 618, 941, 1000
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 5 cut(s) 72, 93, 138, 594, 714
PleI GAGTC 2 cut(s) 1315, 1570
PpsI GAGTC 2 cut(s) 1315, 1570
PscI ACATGT 1 cut(s) 1178
PsiI TTATAA 1 cut(s) 1185
Psp6I CCWGG 1 cut(s) 1093
PspGI CCWGG 1 cut(s) 1093
PspN4I GGNNCC 3 cut(s) 86, 880, 1637
PspPI GGNCC 1 cut(s) 1127
PsrI GAACNNNNNNTAC 2 cut(s) 1331, 1363
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 1112, 1661
PvuII CAGCTG 1 cut(s) 94
RruI TCGCGA 1 cut(s) 1574
RsaI GTAC 4 cut(s) 302, 401, 758, 1606
RsaNI GTAC 4 cut(s) 301, 400, 757, 1605
RseI CAYNNNNRTG 3 cut(s) 1033, 1177, 1587
SapI GCTCTTC 3 cut(s) 247, 780, 1158
SaqAI TTAA 4 cut(s) 261, 1331, 1422, 1545
SatI GCNGC 5 cut(s) 71, 92, 137, 593, 713
Sau3AI GATC 7 cut(s) 229, 535, 748, 835, 1112, 1569, 1661
Sau96I GGNCC 1 cut(s) 1127
SchI GAGTC 2 cut(s) 1316, 1570
ScrFI CCNGG 1 cut(s) 1095
SduI GDGCHC 2 cut(s) 89, 171
SfaNI GCATC 3 cut(s) 643, 688, 1446
SfcI CTRYAG 1 cut(s) 955
Sfr274I CTCGAG 1 cut(s) 1395
SlaI CTCGAG 1 cut(s) 1395
SmiMI CAYNNNNRTG 3 cut(s) 1033, 1177, 1587
SmlI CTYRAG 3 cut(s) 640, 911, 1395
SmoI CTYRAG 3 cut(s) 640, 911, 1395
SsiI CCGC 3 cut(s) 68, 89, 360
SspI AATATT 1 cut(s) 1369
SspMI CTAG 6 cut(s) 176, 365, 377, 435, 483, 570
StyD4I CCNGG 1 cut(s) 1093
StyI CCWWGG 2 cut(s) 882, 1639
TaaI ACNGT 2 cut(s) 1267, 1303
TaqI TCGA 4 cut(s) 150, 216, 1396, 1579
TaqII GACCGA 1 cut(s) 1644
TatI WGTACW 2 cut(s) 399, 1604
TfiI GAWTC 6 cut(s) 152, 274, 383, 618, 941, 1000
Tru1I TTAA 4 cut(s) 261, 1331, 1422, 1545
Tru9I TTAA 4 cut(s) 261, 1331, 1422, 1545
TscAI CASTG 2 cut(s) 166, 850
TseFI GTSAC 1 cut(s) 1308
TseI GCWGC 5 cut(s) 70, 91, 136, 592, 712
Tsp45I GTSAC 1 cut(s) 1308
TspRI CASTG 2 cut(s) 166, 850
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 3 cut(s) 460, 719, 867
XceI RCATGY 2 cut(s) 1182, 1586
XhoI CTCGAG 1 cut(s) 1395
XmnI GAANNNNTTC 2 cut(s) 789, 1370
XspI CTAG 6 cut(s) 176, 365, 377, 435, 483, 570
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.