Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001430

Physical Location & Seq

Genomic Coordinates Forward (+)

11524685 .. 11526572

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13940.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTGACAGCTTCTATGAATATTTACTCAAAGTCTGGATACAGGGGAATAAAACTTCAGCTGTAAAGCCATACAGAGATATGTGGGAGAAATCAATGACAGGTCTGTTGAGCTTGATCCGGAGAACAACACCATCATCTTTTGCATATTTGTGTGAGAAGAATGGAAACTCTCTCACAAACAAGATGGACGAACTAGCGTGCTTTGCTCCAGGAATGCTGGCTTTAGGGTCATCTGGTTATGGTCCCGATGACTCTAAGAAATTCTTAACACTTGCAGAAGAGCTTGCTTGGACATGCTATAACTTCTACCAGTCAACACCGACAAAATTAGCTGGAGAGAACTATTTCTTTTATGCTGGGCAGGACTTAAGCGTGGGTACATCATGGAATATACTGAGACCAGAGACAGTTGAATCACTCTTTTACCTCTGGCGTTTGACTGGCAACAAGACGTACCAAGAGTGGGGCTGGAATATATTTCAAGCATTTGAAAAGAACTCCCGCATAGAGTCAGGATATGTTGGACTGAAAGATGTTAACACTGGCGAGAAAGACAATATGATGCAAAGCTTCTTTCTTGCGGAGACTCTCAAATACCTCTATCTTCTTTTTTCACCCTCGTCAGTCATCTCCCTAGACGAATGGGTTTTCAACACAGAAGCTCACCCAATAAAAATTGTGGCCAGGCATGACGCTGTCACTTCTGGAATAGCAAATGGGAACGACAGACCAAAGATTAGATTGCGCGGCAGGAAGGCAGGCCGAACACAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

260

Amino Acids

29.54

Weight (kDa)

7.62

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51590 AT1G51590 AT3G21160 AT3G21160
fragaria_vesca	FvH4_4g07060 FvH4_4g07060 FvH4_4g07060 FvH4_6g37151 FvH4_6g37151
malus_domestica	MD09G1160700.v1.1 MD13G1240100.v1.1 MD17G1146500.v1.1
prunus_persica	Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.1G073800_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1 Prupe.3G019700_v2.0.a1
pyrus_communis	pycom13g21320 pycom17g13940
rosa_chinensis	RchiOBHm_Chr2g0149781 RchiOBHm_Chr4g0399181
rosa_laevigata	RLG00000009292 RLG00000020443
rosa_multiflora	Rmu_sc0002582.1_g000001 Rmu_sc0018143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00097730 Rroxscaffold_5G00344140
rosa_rugosa	Rorug02G0416000 Rorug04G0014600 Rorug04G0014700
rosa_samantha	Rh2AG475700 Rh2BG487100 Rh2CG461200 Rh2DG496200 Rh4AG092700 Rh4BG090600 Rh4CG101100 Rh4DG085000
rosa_wichuraiana	Rw2G038770 Rw4G007630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	750
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	3 cut(s)	505, 584, 750
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	382, 458
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	416, 485, 494, 655
AjnI	CCWGG	2 cut(s)	211, 686
AluBI	AGCT	7 cut(s)	12, 62, 114, 286, 335, 573, 665
AluI	AGCT	7 cut(s)	12, 62, 114, 286, 335, 573, 665
Alw26I	GTCTC	3 cut(s)	394, 401, 581
AlwI	GGATC	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	2 cut(s)	684, 763
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	17, 609, 659
AvaII	GGWCC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	686
BccI	CCATC	2 cut(s)	142, 181
BciT130I	CCWGG	2 cut(s)	213, 688
BciVI	GTATCC	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	394, 401, 581
BfaI	CTAG	2 cut(s)	197, 638
BfrI	CTTAAG	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	751
BlsI	GCNGC	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	213, 688
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	213, 688
BmsI	GCATC	1 cut(s)	555
BpmI	CTGGAG	2 cut(s)	195, 357
BsaI	GGTCTC	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	313, 448, 550
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	213, 688
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	313, 448, 550
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	686, 765
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	3 cut(s)	394, 401, 581
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	686, 765
Bso31I	GGTCTC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	505, 584, 750
BspANI	GGCC	2 cut(s)	686, 765
BspCNI	CTCAG	1 cut(s)	390
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	394
BsrI	ACTGG	3 cut(s)	313, 448, 550
BssMI	GATC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	213, 688
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	202, 222, 288, 763
BstDEI	CTNAG	2 cut(s)	258, 398
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	3 cut(s)	394, 401, 581
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	213, 688
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	211, 686
BstUI	CGCG	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	686, 765
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	4 cut(s)	202, 222, 288, 763
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	381, 457
CviAII	CATG	3 cut(s)	297, 387, 692
CviQI	GTAC	2 cut(s)	381, 457
DdeI	CTNAG	2 cut(s)	258, 398
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	211, 686
FaeI	CATG	3 cut(s)	300, 390, 695
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	296, 386, 691
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	1 cut(s)	751
Fsp4HI	GCNGC	1 cut(s)	751
FspBI	CTAG	2 cut(s)	197, 638
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	1 cut(s)	751
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	195, 357
HaeIII	GGCC	2 cut(s)	686, 765
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	300, 390, 695
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	2 cut(s)	318, 541
HindII	GTYRAC	2 cut(s)	318, 541
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	4 cut(s)	254, 416, 512, 589
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	3 cut(s)	17, 609, 659
Hpy166II	GTNNAC	2 cut(s)	318, 541
Hpy188III	TCNNGA	5 cut(s)	37, 121, 248, 516, 708
Hpy8I	GTNNAC	2 cut(s)	318, 541
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	3 cut(s)	146, 278, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	258, 398
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	300, 390, 695
HspAI	GCGC	1 cut(s)	748
Kpn2I	TCCGGA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	117
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	214
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	197, 638
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	2 cut(s)	5, 700
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	172, 293, 599
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	3 cut(s)	263, 329, 678
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	3 cut(s)	248, 521, 583
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	440, 611, 631
Mox20I	TGGCCA	1 cut(s)	686
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	3 cut(s)	269, 371, 540
MslI	CAYNNNNRTG	1 cut(s)	151
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	2 cut(s)	213, 688
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	2 cut(s)	213, 688
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	300, 390, 695
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	5, 700
NspI	RCATGY	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	698
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	752
PleI	GAGTC	3 cut(s)	248, 520, 583
PpsI	GAGTC	3 cut(s)	248, 520, 583
Psp6I	CCWGG	2 cut(s)	211, 686
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	211, 686
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	382, 458
RsaNI	GTAC	2 cut(s)	381, 457
RseI	CAYNNNNRTG	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	269, 371, 540
SatI	GCNGC	1 cut(s)	751
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	3 cut(s)	248, 521, 583
ScrFI	CCNGG	2 cut(s)	213, 688
SfaNI	GCATC	1 cut(s)	555
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	263, 329, 678
SsiI	CCGC	3 cut(s)	505, 584, 750
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	2 cut(s)	197, 638
StyD4I	CCNGG	2 cut(s)	211, 686
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	458
TasI	AATT	3 cut(s)	263, 329, 678
TauI	GCSGC	1 cut(s)	753
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	269, 371, 540
Tru9I	TTAA	3 cut(s)	269, 371, 540
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	5, 700
Tsp45I	GTSAC	2 cut(s)	5, 700
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	550
Tth111I	GACNNNGTC	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	2 cut(s)	197, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.