FvH4_4g07080
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015175
Physical Location & Seq
Reverse (-)
6475375 .. 6478209
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07080.t1

Sequence Viewer

Length: 1215 bp
ATGGACTTCTCGTCCTCACCTACAAATTGGTACCACTCCTTCTTCTACATCACCTTCATCTCCGCCCTCCTCTACTTCCTCCACACCCAAATCGCTCCCAAATTACTCATAGGCCATCAACCCGTATCCATCAAGAAGACCAGCCCAAATCTCCCCCTTCGCTTCCGCTCAGATGGCACCTTCAAGATTCTTCAGGTGGCTGATATGCATTATGGGAATGGAGGGTCAAGTCGGTGCCGAGATGTGTTGGACTCCGAGTTTGCAAGCTGTTCTGATCATAACACGTCGCTGTTCCTCAGGAGGATGATAGAAGCCGAGAAGCCCGATTTCATTGCTTTTACAGGGGACAATATATTTGGGAGAAGCTCTACCGACGCTGCTGAATCAATGCTTCGAGCATTTCGTCCTGCCATTGAATCCGGCCTTCCGTGGGCAGCAGTTTTGGGAAACCACGACCAAGAATCTACAATGACTCGTGAAGAACTCATGTTCTTTATCTCCCTTATGGACTATTCACTTTCACAAGTTAATCCATTAGCTGAAGATCTCTTAGGAGAAAAGATGCAAGACATTGATGGCTTTGGCAATTATGATCTGAGAGTATATGGTGCCCCAGGTTCCTACATGGCAAACAGCAGCATTCTCAACCTTTTCTTTCTTGACAGTGGAGACAGAGAGATTGTTAATGGAGTACGAACTTACGGTTGGATTAAGGAATCACAACTCAATTGGCTTCGTGGTGTTTCACAGGGCCACAGTCGTGATCCTACTCATTCAGACAATGCTTTTCCTCCAGATAAACCACCGGCCCTTGCTTTTTTCCATATCCCAATTCCTGAGATCCGACAACTGTGGAATAAAGACATTGTTGGCAAGTTTCAGGAGGGTGTGGCATGTTCATCAGTGAACCCAGGAGTTTTGCAGATCCTTGTATCCATGGGAGATGTGAAAGCTGTGTTCATTGGACATGATCATACCAATGATTTCTGTGGGAATCTTGATGGTGTTTGGTTTTGTTATGGTGGTGGCTTTGGATATCATGGTTATGGAAGGACGGGGTGGCCAAGAAGAGGTAGGGTTATACTGGCAGAACTCGGGAAAGGGGACAAAGGTTGGATGGGAGTTGAGAGGATTAGGACATGGAAGCGTCTTGATGATGAGAAACTGAGCAAGATTGATGAGCAGTTATTGTGGGAAAACCATCCATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

405

Amino Acids

45.51

Weight (kDa)

5.81

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 61 - 326 1.9e-14 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57140
fragaria_vesca FvH4_4g07080
malus_domestica MD04G1168800.v1.1
prunus_persica Prupe.1G074200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399201
rosa_laevigata RLG00000009290
rosa_multiflora Rmu_co8469863.1_g000001 Rmu_sc0002582.1_g000004 Rmu_sc0024868.1_g000004
rosa_roxburghii Rroxscaffold_5G00344160
rosa_rugosa Rorug04G0015100
rosa_samantha Rh4AG093000 Rh4BG090800 Rh4CG101400 Rh4DG085300
rosa_wichuraiana Rw4G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 30
AccB1I GGYRCC 4 cut(s) 30, 176, 234, 608
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 2 cut(s) 63, 166
AclWI GGATC 3 cut(s) 758, 835, 919
AcoI YGGCCR 1 cut(s) 1061
AcuI CTGAAG 2 cut(s) 176, 561
AfaI GTAC 2 cut(s) 32, 693
AfiI CCNNNNNNNGG 2 cut(s) 430, 1070
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 184, 416
AhdI GACNNNNNGTC 1 cut(s) 10
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 613, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AleI CACNNNNGTG 1 cut(s) 759
AluBI AGCT 4 cut(s) 267, 366, 539, 953
AluI AGCT 4 cut(s) 267, 366, 539, 953
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 3 cut(s) 758, 835, 919
Ama87I CYCGRG 1 cut(s) 1094
AoxI GGCC 5 cut(s) 112, 421, 751, 807, 1061
ApeKI GCWGC 3 cut(s) 377, 434, 636
ArsI GACNNNNNNTTYG 4 cut(s) 242, 274, 338, 370
Asp718I GGTACC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 751, 808
AsuHPI GGTGA 2 cut(s) 9, 43
AvaI CYCGRG 1 cut(s) 1094
AxyI CCTNAGG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 613
BalI TGGCCA 1 cut(s) 1063
BanI GGYRCC 4 cut(s) 30, 176, 234, 608
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 364, 446, 648
BccI CCATC 8 cut(s) 123, 137, 167, 569, 995, 1111, 1209, 1213
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 2 cut(s) 615, 912
BciVI GTATCC 2 cut(s) 136, 943
BclI TGATCA 2 cut(s) 274, 970
BcoDI GTCTC 1 cut(s) 663
BfuI GTATCC 2 cut(s) 136, 943
BglII AGATCT 1 cut(s) 544
BisI GCNGC 3 cut(s) 378, 435, 637
BlsI GCNGC 3 cut(s) 379, 436, 638
Bme1390I CCNGG 2 cut(s) 615, 912
BmeRI GACNNNNNGTC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 1094
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 751, 808
BmiI GGNNCC 5 cut(s) 32, 178, 236, 610, 619
BmrFI CCNGG 2 cut(s) 615, 912
BmsI GCATC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 777
BsaJI CCNNGG 4 cut(s) 428, 613, 910, 936
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 1070
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 1 cut(s) 1089
Bse21I CCTNAGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 615, 912
BseDI CCNNGG 4 cut(s) 428, 613, 910, 936
BseGI GGATG 3 cut(s) 309, 1122, 1201
BseLI CCNNNNNNNGG 2 cut(s) 430, 1070
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 5 cut(s) 183, 310, 587, 828, 1157
BseNI ACTGG 1 cut(s) 1089
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 3 cut(s) 364, 446, 648
BshFI GGCC 5 cut(s) 114, 423, 753, 809, 1063
BshNI GGYRCC 4 cut(s) 30, 176, 234, 608
BsiHKCI CYCGRG 1 cut(s) 1094
BsiSI CCGG 2 cut(s) 420, 806
BslFI GGGAC 2 cut(s) 359, 1118
BslI CCNNNNNNNGG 2 cut(s) 430, 1070
BsmAI GTCTC 1 cut(s) 663
BsmFI GGGAC 2 cut(s) 359, 1118
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 5 cut(s) 114, 423, 753, 809, 1063
BsoBI CYCGRG 1 cut(s) 1094
Bsp1286I GDGCHC 1 cut(s) 613
Bsp143I GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 2 cut(s) 63, 166
BspANI GGCC 5 cut(s) 114, 423, 753, 809, 1063
BspCNI CTCAG 5 cut(s) 182, 309, 588, 829, 1158
BspLI GGNNCC 5 cut(s) 32, 178, 236, 610, 619
BspPI GGATC 3 cut(s) 758, 835, 919
BspT107I GGYRCC 4 cut(s) 30, 176, 234, 608
BsrBI CCGCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 1 cut(s) 1089
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 4 cut(s) 428, 613, 910, 936
BssMI GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 615, 912
Bst4CI ACNGT 4 cut(s) 665, 704, 758, 852
Bst6I CTCTTC 1 cut(s) 1063
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 6 cut(s) 169, 296, 550, 596, 837, 1166
BstDSI CCRYGG 2 cut(s) 428, 936
BstF5I GGATG 3 cut(s) 309, 1122, 1201
BstKTI GATC 7 cut(s) 277, 547, 595, 766, 843, 927, 973
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 615, 912
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 2 cut(s) 613, 910
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 3 cut(s) 364, 446, 648
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 3 cut(s) 544, 840, 924
BstYI RGATCY 3 cut(s) 544, 840, 924
Bsu36I CCTNAGG 1 cut(s) 296
BsuI GTATCC 2 cut(s) 136, 943
BsuRI GGCC 5 cut(s) 114, 423, 753, 809, 1063
BtgI CCRYGG 2 cut(s) 428, 936
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 3 cut(s) 309, 1122, 1201
BtsIMutI CAGTG 2 cut(s) 670, 909
Cac8I GCNNGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 2 cut(s) 751, 808
CseI GACGC 2 cut(s) 383, 1136
Csp6I GTAC 2 cut(s) 31, 692
CviAII CATG 7 cut(s) 487, 625, 894, 937, 968, 1040, 1140
CviQI GTAC 2 cut(s) 31, 692
DdeI CTNAG 6 cut(s) 169, 296, 550, 596, 837, 1166
DpnI GATC 7 cut(s) 276, 546, 594, 765, 842, 926, 972
DpnII GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 1061
Eam1104I CTCTTC 1 cut(s) 1063
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 1063
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 936
Eco32I GATATC 1 cut(s) 1037
Eco57I CTGAAG 2 cut(s) 176, 561
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 613, 910
EcoRV GATATC 1 cut(s) 1037
EcoT14I CCWWGG 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 7 cut(s) 490, 628, 897, 940, 971, 1043, 1143
FaqI GGGAC 2 cut(s) 359, 1118
FatI CATG 7 cut(s) 486, 624, 893, 936, 967, 1039, 1139
FbaI TGATCA 2 cut(s) 274, 970
Fnu4HI GCNGC 3 cut(s) 378, 435, 637
FokI GGATG 3 cut(s) 316, 1129, 1188
Fsp4HI GCNGC 3 cut(s) 378, 435, 637
GluI GCNGC 3 cut(s) 378, 435, 637
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 5 cut(s) 114, 423, 753, 809, 1063
HapII CCGG 2 cut(s) 420, 806
HgaI GACGC 2 cut(s) 383, 1136
Hin1II CATG 7 cut(s) 490, 628, 897, 940, 971, 1043, 1143
HinfI GANTC 8 cut(s) 187, 251, 383, 416, 461, 472, 716, 994
HpaII CCGG 2 cut(s) 420, 806
HphI GGTGA 2 cut(s) 9, 43
Hpy166II GTNNAC 1 cut(s) 907
Hpy188I TCNGA 6 cut(s) 172, 256, 274, 597, 778, 845
Hpy8I GTNNAC 1 cut(s) 907
Hpy99I CGWCG 2 cut(s) 289, 377
HpyAV CCTTC 6 cut(s) 49, 64, 167, 190, 434, 1044
HpyCH4III ACNGT 4 cut(s) 665, 704, 758, 852
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 208, 263, 565, 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 6 cut(s) 169, 296, 550, 596, 837, 1166
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 7 cut(s) 490, 628, 897, 940, 971, 1043, 1143
KpnI GGTACC 1 cut(s) 34
Ksp22I TGATCA 2 cut(s) 274, 970
Kzo9I GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 3 cut(s) 364, 446, 648
LweI GCATC 1 cut(s) 552
MaeII ACGT 1 cut(s) 284
MalI GATC 7 cut(s) 276, 546, 594, 765, 842, 926, 972
MbiI CCGCTC 1 cut(s) 168
MboI GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
MboII GAAGA 6 cut(s) 34, 148, 182, 491, 554, 1080
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 3 cut(s) 544, 840, 924
MhlI GDGCHC 1 cut(s) 613
MlsI TGGCCA 1 cut(s) 1063
MluCI AATT 5 cut(s) 25, 101, 586, 727, 831
MluNI TGGCCA 1 cut(s) 1063
MlyI GAGTC 2 cut(s) 245, 466
MmeI TCCRAC 4 cut(s) 228, 686, 868, 1094
Mox20I TGGCCA 1 cut(s) 1063
Mph1103I ATGCAT 1 cut(s) 210
MscI TGGCCA 1 cut(s) 1063
MseI TTAA 3 cut(s) 528, 684, 711
MslI CAYNNNNRTG 3 cut(s) 759, 978, 1044
Msp20I TGGCCA 1 cut(s) 1063
MspI CCGG 2 cut(s) 420, 806
MspR9I CCNGG 2 cut(s) 615, 912
MunI CAATTG 1 cut(s) 727
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 2 cut(s) 615, 912
MwoI GCNNNNNNNGC 1 cut(s) 174
NcoI CCATGG 1 cut(s) 936
NdeII GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
NlaIII CATG 7 cut(s) 490, 628, 897, 940, 971, 1043, 1143
NlaIV GGNNCC 5 cut(s) 32, 178, 236, 610, 619
NmeAIII GCCGAG 2 cut(s) 263, 340
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 1 cut(s) 897
OliI CACNNNNGTG 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 6 cut(s) 187, 383, 416, 461, 716, 994
PkrI GCNGC 3 cut(s) 379, 436, 638
PleI GAGTC 2 cut(s) 245, 466
PpsI GAGTC 2 cut(s) 245, 466
Psp6I CCWGG 2 cut(s) 613, 910
PspGI CCWGG 2 cut(s) 613, 910
PspN4I GGNNCC 5 cut(s) 32, 178, 236, 610, 619
PspPI GGNCC 2 cut(s) 751, 808
PsuI RGATCY 3 cut(s) 544, 840, 924
RsaI GTAC 2 cut(s) 32, 693
RsaNI GTAC 2 cut(s) 31, 692
RseI CAYNNNNRTG 3 cut(s) 759, 978, 1044
SaqAI TTAA 3 cut(s) 528, 684, 711
SatI GCNGC 3 cut(s) 378, 435, 637
Sau3AI GATC 7 cut(s) 274, 544, 592, 763, 840, 924, 970
Sau96I GGNCC 2 cut(s) 751, 808
SchI GAGTC 2 cut(s) 245, 466
ScrFI CCNGG 2 cut(s) 615, 912
SduI GDGCHC 1 cut(s) 613
SfaNI GCATC 1 cut(s) 552
SmiMI CAYNNNNRTG 3 cut(s) 759, 978, 1044
Sse9I AATT 5 cut(s) 25, 101, 586, 727, 831
SsiI CCGC 2 cut(s) 63, 166
StyD4I CCNGG 2 cut(s) 613, 910
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 4 cut(s) 665, 704, 758, 852
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 394
TasI AATT 5 cut(s) 25, 101, 586, 727, 831
TfiI GAWTC 6 cut(s) 187, 383, 416, 461, 716, 994
Tru1I TTAA 3 cut(s) 528, 684, 711
Tru9I TTAA 3 cut(s) 528, 684, 711
TscAI CASTG 2 cut(s) 670, 909
TseI GCWGC 3 cut(s) 377, 434, 636
TspDTI ATGAA 4 cut(s) 46, 319, 888, 949
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 670, 909
XceI RCATGY 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.